Rh7BG358600

Splicing factor 3B subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008898
Physical Location & Seq
Forward (+)
37702386 .. 37746130
43745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG358600.1

Sequence Viewer

Length: 660 bp
ATGGAATTGGAGGACACTGAAAAGAATTTGAGAGATGAGCTGGAAAATGCACAAACAGCATTGGATACCAGTCGATCTCGCGGATCAGATGAAGCTATTGGCAACTCCAAAACATCAGTTGAAACTGGAGATGACATGGAATCATCAAAGAAAGCTATACTGGACAAGTTAGAGGAGAGGAAAAGAGAATTGGTTAGTGAAGAATTGCTGTGGGAGCTGTTTGTTCAAGCCGGTCCTGTTGTTAATGTGTATGTTCCCAAAGATAGAGTTACGAACCTCCATCAAGGATACGGATTCGTGGAGTTCCGAAGTGAAGAGGATGCTGATTACATAAGTTTTCGTTTTCTTAAGTTATTGTATAGCTCCCCGATTCATGTTAAAGATGTTATTTTTGACTATAAATTTGTTGTTTTGACTGCTATGCAGGCAGTCAAGGTGCTTAATATGATCAAGCTTTACGGAAAGATAATTCATGTAAATAAGAAGGAGCTTAGGTTGGCTCTGTTCAAAATTCAAGCAGGTGAAAATCTTTTTCTCGATAGGTTGTTAAGCTTCCTTTCCATCTATAACTGGAGTGAGTCTGCTACATATTCAGAGCTTCTCAGTCAGCATGTAAGCAACCAATTTCAGCATCCCTTCCATCATACAAATGGAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

219

Amino Acids

25.28

Weight (kDa)

5.33

Isoelectric Point (pI)

28.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 65 - 110 2.3e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 509
AccII CGCG 1 cut(s) 81
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 3 cut(s) 25, 401, 510
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 4 cut(s) 122, 227, 508, 515
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 9 cut(s) 40, 95, 155, 217, 363, 454, 490, 552, 598
AluI AGCT 9 cut(s) 40, 95, 155, 217, 363, 454, 490, 552, 598
Alw26I GTCTC 1 cut(s) 648
AlwI GGATC 1 cut(s) 91
ApoI RAATTY 3 cut(s) 25, 401, 510
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 233
BccI CCATC 3 cut(s) 288, 569, 648
BciVI GTATCC 2 cut(s) 58, 281
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 1 cut(s) 658
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 509
BfuI GTATCC 2 cut(s) 58, 281
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmsI GCATC 2 cut(s) 310, 640
BpmI CTGGAG 2 cut(s) 147, 592
Bpu10I CCTNAGC 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 479, 509
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 4 cut(s) 69, 130, 165, 575
BseGI GGATG 2 cut(s) 325, 631
BseMII CTCAG 1 cut(s) 616
BseNI ACTGG 4 cut(s) 69, 130, 165, 575
BseRI GAGGAG 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 648
Bsp143I GATC 3 cut(s) 74, 83, 447
BspACI CCGC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 615
BspFNI CGCG 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 4 cut(s) 69, 130, 165, 575
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 3 cut(s) 74, 83, 447
Bst6I CTCTTC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 491, 602
BstF5I GGATG 2 cut(s) 325, 631
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 3 cut(s) 77, 86, 450
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 3 cut(s) 74, 83, 447
BstMWI GCNNNNNNNGC 3 cut(s) 56, 214, 425
BstNSI RCATGY 1 cut(s) 614
BstUI CGCG 1 cut(s) 81
BsuI GTATCC 2 cut(s) 58, 281
BtsCI GGATG 2 cut(s) 325, 631
BtsIMutI CAGTG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 426
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 4 cut(s) 136, 374, 473, 611
DdeI CTNAG 2 cut(s) 491, 602
DpnI GATC 3 cut(s) 76, 85, 449
DpnII GATC 3 cut(s) 74, 83, 447
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 233
FaeI CATG 4 cut(s) 139, 377, 476, 614
FatI CATG 4 cut(s) 135, 373, 472, 610
FbaI TGATCA 1 cut(s) 447
FokI GGATG 2 cut(s) 332, 618
FspBI CTAG 1 cut(s) 658
GsuI CTGGAG 2 cut(s) 147, 592
HapII CCGG 1 cut(s) 231
Hin1II CATG 4 cut(s) 139, 377, 476, 614
HindIII AAGCTT 2 cut(s) 452, 550
HinfI GANTC 4 cut(s) 140, 294, 370, 578
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 533
Hpy188I TCNGA 3 cut(s) 88, 308, 595
Hpy188III TCNNGA 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 478, 646
HpyCH4V TGCA 2 cut(s) 50, 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 214, 425
HpyF3I CTNAG 2 cut(s) 491, 602
Hsp92II CATG 4 cut(s) 139, 377, 476, 614
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 3 cut(s) 74, 83, 447
LmnI GCTCC 3 cut(s) 214, 368, 487
LpnPI CCDG 9 cut(s) 26, 82, 111, 146, 244, 249, 410, 504, 556
LweI GCATC 2 cut(s) 310, 640
MaeI CTAG 1 cut(s) 658
MaeIII GTNAC 1 cut(s) 268
MalI GATC 3 cut(s) 76, 85, 449
MboI GATC 3 cut(s) 74, 83, 447
MboII GAAGA 2 cut(s) 212, 326
MluCI AATT 8 cut(s) 5, 25, 188, 203, 401, 468, 510, 623
MlyI GAGTC 1 cut(s) 587
MnlI CCTC 5 cut(s) 4, 166, 171, 287, 310
MseI TTAA 5 cut(s) 243, 348, 378, 441, 548
MslI CAYNNNNRTG 1 cut(s) 648
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 56, 214, 425
NdeII GATC 3 cut(s) 74, 83, 447
NlaIII CATG 4 cut(s) 139, 377, 476, 614
NspI RCATGY 1 cut(s) 614
PaqCI CACCTGC 1 cut(s) 509
PfeI GAWTC 3 cut(s) 140, 294, 370
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PspPI GGNCC 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 5 cut(s) 243, 348, 378, 441, 548
Sau3AI GATC 3 cut(s) 74, 83, 447
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 587
SfaNI GCATC 2 cut(s) 310, 640
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 8 cut(s) 5, 25, 188, 203, 401, 468, 510, 623
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 658
TaqI TCGA 2 cut(s) 73, 537
TasI AATT 8 cut(s) 5, 25, 188, 203, 401, 468, 510, 623
TfiI GAWTC 3 cut(s) 140, 294, 370
Tru1I TTAA 5 cut(s) 243, 348, 378, 441, 548
Tru9I TTAA 5 cut(s) 243, 348, 378, 441, 548
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 105, 362, 461
TspGWI ACGGA 2 cut(s) 306, 474
TspRI CASTG 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 3 cut(s) 25, 401, 510
XceI RCATGY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XspI CTAG 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.