RchiOBHm_Chr3g0462941

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
10458417 .. 10459290
874 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42927

Sequence Viewer

Length: 171 bp
ATGGTCCACTGCATTGCTTGTATGTTTGCTAGGATTGCTGGTATGCTGATATCAGTTTTCAATCCTAAATTAGGATTATGCTTAGTGTCTAATCCCATACACTTAACACTTTTGATGGAAAGGTTATGGAGTGTTAGAAGGAATCATGGTTGCATGGTTTCCTTAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.28

Weight (kDa)

9.37

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 71
AflII CTTAAG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
BccI CCATC 1 cut(s) 109
BfaI CTAG 1 cut(s) 30
BfrI CTTAAG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 2 cut(s) 146, 154
CviJI RGCY 1 cut(s) 168
CviKI_1 RGCY 1 cut(s) 168
DdeI CTNAG 1 cut(s) 82
Eco32I GATATC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 4
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRV GATATC 1 cut(s) 51
FaeI CATG 2 cut(s) 149, 157
FaiI YATR 7 cut(s) 23, 44, 79, 98, 127, 147, 155
FatI CATG 2 cut(s) 145, 153
FspBI CTAG 1 cut(s) 30
Hin1II CATG 2 cut(s) 149, 157
HinfI GANTC 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 12, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 2 cut(s) 149, 157
LpnPI CCDG 1 cut(s) 24
MaeI CTAG 1 cut(s) 30
MluCI AATT 1 cut(s) 68
MseI TTAA 2 cut(s) 104, 164
MspCI CTTAAG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 149, 157
PfeI GAWTC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 104, 164
Sau96I GGNCC 1 cut(s) 4
SetI ASST 2 cut(s) 125, 170
SgeI CNNG 5 cut(s) 30, 42, 51, 158, 166
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
Sse9I AATT 1 cut(s) 68
SspMI CTAG 1 cut(s) 30
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 2 cut(s) 104, 164
Tru9I TTAA 2 cut(s) 104, 164
TscAI CASTG 1 cut(s) 14
TspRI CASTG 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 69
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.