Rh4DG088100

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008905
Physical Location & Seq
Reverse (-)
13425236 .. 13448785
23550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG088100.1

Sequence Viewer

Length: 489 bp
ATGGATTACGACTACCGGAAAACCTCATCCTATGGCGCAAAGATCCCGCCCTACCACCTGTCCTCGTCATCACAGCCGATGTACGGACCTCTACAGCCGTTTTCGTCGTTGTACTCCAAGTCAACACGATCAAATGTTGGTCGCTCCTCCGTCTCACGGCGGTGGACGTCACCGTCCCTTTCCTGCTCTCCGTGCTGCAATGCTGAAGAGTACTTTGCGGATACTATTCTGAAAGCTCAACAGAAAAGTCTACTTGATCAAGGTAATAGAAGTGATCTACTGAAGATGCAACAAGAAAAGGCGAGATTAGAGCGGAAGCAGCGTGAAGCTGTAAATGACCGCAAGGACAACGTGTCTCTGGCTCCTGCGCATGGGAAGGAAAGAGATGAACATGATAAGGATTCCTGCAAGAGGAAAACCAATTGGTCCAGGACCACCACCATAACTCCCTCAACCTCGGCGAACGCACAGAATGGAAAAATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

162

Amino Acids

18.26

Weight (kDa)

9.58

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 172
AatII GACGTC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 369
AccBSI CCGCTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 250
AciI CCGC 5 cut(s) 47, 160, 218, 313, 340
AclWI GGATC 1 cut(s) 37
AcuI CTGAAG 2 cut(s) 225, 302
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 3 cut(s) 83, 113, 212
AfiI CCNNNNNNNGG 4 cut(s) 83, 156, 371, 411
AflIII ACRYGT 1 cut(s) 351
AhdI GACNNNNNGTC 1 cut(s) 352
AjnI CCWGG 1 cut(s) 428
AleI CACNNNNGTG 1 cut(s) 160
AluBI AGCT 2 cut(s) 236, 329
AluI AGCT 2 cut(s) 236, 329
Alw26I GTCTC 2 cut(s) 157, 360
AlwI GGATC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 195, 319
AspLEI GCGC 2 cut(s) 38, 370
AspS9I GGNCC 3 cut(s) 86, 426, 432
AsuHPI GGTGA 1 cut(s) 162
AvaII GGWCC 3 cut(s) 86, 426, 432
BbvI GCAGC 2 cut(s) 182, 331
BceAI ACGGC 2 cut(s) 82, 173
BciT130I CCWGG 1 cut(s) 430
BciVI GTATCC 1 cut(s) 214
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 157, 360
BfmI CTRYAG 1 cut(s) 92
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 2 cut(s) 196, 320
BlsI GCNGC 2 cut(s) 197, 321
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 430
Bme18I GGWCC 3 cut(s) 86, 426, 432
BmeRI GACNNNNNGTC 1 cut(s) 352
BmgT120I GGNCC 3 cut(s) 86, 426, 432
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 156, 371, 411
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 4 cut(s) 83, 156, 371, 411
BseMI GCAATG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 182, 331
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 4 cut(s) 83, 156, 371, 411
BsmAI GTCTC 2 cut(s) 157, 360
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 160
Bsp143I GATC 4 cut(s) 42, 128, 256, 274
BspACI CCGC 5 cut(s) 47, 160, 218, 313, 340
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 4 cut(s) 42, 128, 256, 274
BssNI GRCGYC 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 1 cut(s) 26
BstHHI GCGC 2 cut(s) 38, 370
BstKTI GATC 4 cut(s) 45, 131, 259, 277
BstMAI GTCTC 2 cut(s) 157, 360
BstMBI GATC 4 cut(s) 42, 128, 256, 274
BstMWI GCNNNNNNNGC 2 cut(s) 192, 319
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 428
BstSFI CTRYAG 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 182, 331
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuI GTATCC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 26
CfoI GCGC 2 cut(s) 38, 370
Cfr13I GGNCC 3 cut(s) 86, 426, 432
Csp6I GTAC 3 cut(s) 82, 112, 211
CviAII CATG 2 cut(s) 371, 392
CviJI RGCY 6 cut(s) 76, 97, 236, 329, 362, 486
CviKI_1 RGCY 6 cut(s) 76, 97, 236, 329, 362, 486
CviQI GTAC 3 cut(s) 82, 112, 211
DpnI GATC 4 cut(s) 44, 130, 258, 276
DpnII GATC 4 cut(s) 42, 128, 256, 274
DrdI GACNNNNNNGTC 1 cut(s) 172
DriI GACNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 201
Eam1105I GACNNNNNGTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 201
Eco47I GGWCC 3 cut(s) 86, 426, 432
Eco57I CTGAAG 2 cut(s) 225, 302
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 2 cut(s) 374, 395
FaiI YATR 4 cut(s) 33, 372, 393, 443
FaqI GGGAC 1 cut(s) 160
FatI CATG 2 cut(s) 370, 391
FauI CCCGC 1 cut(s) 54
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 196, 320
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 196, 320
FspI TGCGCA 1 cut(s) 369
GlaI GCGC 2 cut(s) 37, 369
GluI GCNGC 2 cut(s) 196, 320
HapII CCGG 1 cut(s) 16
HhaI GCGC 2 cut(s) 38, 370
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 2 cut(s) 374, 395
Hin6I GCGC 2 cut(s) 36, 368
HinP1I GCGC 2 cut(s) 36, 368
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 1 cut(s) 401
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 3 cut(s) 123, 165, 251
Hpy188I TCNGA 1 cut(s) 231
Hpy8I GTNNAC 3 cut(s) 123, 165, 251
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 2 cut(s) 167, 351
HpyCH4V TGCA 3 cut(s) 198, 289, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 319
HpySE526I ACGT 2 cut(s) 167, 351
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 2 cut(s) 374, 395
HspAI GCGC 2 cut(s) 36, 368
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 42, 128, 256, 274
LmnI GCTCC 2 cut(s) 149, 367
LpnPI CCDG 8 cut(s) 29, 71, 196, 344, 378, 415, 418, 442
Lsp1109I GCAGC 2 cut(s) 182, 331
LweI GCATC 1 cut(s) 276
MaeII ACGT 2 cut(s) 167, 351
MaeIII GTNAC 1 cut(s) 168
MalI GATC 4 cut(s) 44, 130, 258, 276
MbiI CCGCTC 1 cut(s) 313
MboI GATC 4 cut(s) 42, 128, 256, 274
MboII GAAGA 2 cut(s) 218, 295
MfeI CAATTG 1 cut(s) 421
MflI RGATCY 1 cut(s) 42
MluCI AATT 2 cut(s) 421, 480
MnlI CCTC 7 cut(s) 34, 73, 99, 157, 405, 460, 466
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 1 cut(s) 430
MunI CAATTG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 430
MwoI GCNNNNNNNGC 2 cut(s) 192, 319
NdeII GATC 4 cut(s) 42, 128, 256, 274
NlaIII CATG 2 cut(s) 374, 395
NlaIV GGNNCC 1 cut(s) 363
NmeAIII GCCGAG 1 cut(s) 437
NmuCI GTSAC 1 cut(s) 168
NsbI TGCGCA 1 cut(s) 369
OliI CACNNNNGTG 1 cut(s) 160
PfeI GAWTC 1 cut(s) 401
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 2 cut(s) 197, 321
Psp6I CCWGG 1 cut(s) 428
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 3 cut(s) 86, 426, 432
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 3 cut(s) 83, 113, 212
RsaNI GTAC 3 cut(s) 82, 112, 211
RseI CAYNNNNRTG 1 cut(s) 160
SatI GCNGC 2 cut(s) 196, 320
Sau3AI GATC 4 cut(s) 42, 128, 256, 274
Sau96I GGNCC 3 cut(s) 86, 426, 432
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 430
SetI ASST 9 cut(s) 26, 60, 91, 170, 238, 265, 331, 354, 458
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 92
SinI GGWCC 3 cut(s) 86, 426, 432
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 2 cut(s) 421, 480
SsiI CCGC 5 cut(s) 47, 160, 218, 313, 340
StyD4I CCNGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 2 cut(s) 170, 354
TasI AATT 2 cut(s) 421, 480
TatI WGTACW 2 cut(s) 111, 210
TfiI GAWTC 1 cut(s) 401
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 2 cut(s) 195, 319
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 402
TspGWI ACGGA 3 cut(s) 99, 139, 180
VpaK11BI GGWCC 3 cut(s) 86, 426, 432
XagI CCTNNNNNAGG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 250
ZraI GACGTC 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.