Rroxscaffold_3G00227890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008905
Physical Location & Seq
Reverse (-)
12159813 .. 12160231
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227890.1

Sequence Viewer

Length: 315 bp
ATGGATTACGACTACCGGAAAACCTCATCCTATGGGGCAAAGATCCCGCCCTACCACCTGTCCTCGTCATCACAGCCGATGTACGGACCTCTGCAGCCGTTGTCGTCGTTGTACTCCAAGTCAACACGATCAAATGTTGGTCGCTCCTCCGTCTCACGGCGGTGGACGTCACCGTCCCTTTCCTCGGGATTTGGCATTCAAGTTTCTATTGAGGCAGAGTATCGGATCACTCTTCCGGTAAGTTTTGGAGTTTCAATTATAGCAATTAGTGATGGAAAGGTTTCATTGTATTTTGGACAATTGAACTTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.44

Weight (kDa)

9.52

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 172
AatII GACGTC 1 cut(s) 170
AciI CCGC 2 cut(s) 47, 160
AclWI GGATC 2 cut(s) 37, 233
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 2 cut(s) 83, 113
AfiI CCNNNNNNNGG 3 cut(s) 83, 156, 184
AgsI TTSAA 3 cut(s) 200, 255, 304
AleI CACNNNNGTG 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 37, 233
Ama87I CYCGRG 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 162
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 266
BceAI ACGGC 2 cut(s) 82, 173
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 92
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 2 cut(s) 15, 235
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 156, 184
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 83, 156, 184
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 2 cut(s) 16, 236
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 3 cut(s) 83, 156, 184
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 184
Bsp143I GATC 3 cut(s) 42, 128, 225
BspACI CCGC 2 cut(s) 47, 160
BspMAI CTGCAG 1 cut(s) 96
BspPI GGATC 2 cut(s) 37, 233
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 3 cut(s) 42, 128, 225
BssNI GRCGYC 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 3 cut(s) 45, 131, 228
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 3 cut(s) 42, 128, 225
BstSFI CTRYAG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BtsCI GGATG 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 82, 112
CviJI RGCY 2 cut(s) 76, 97
CviKI_1 RGCY 2 cut(s) 76, 97
CviQI GTAC 2 cut(s) 82, 112
DdeI CTNAG 1 cut(s) 307
DpnI GATC 3 cut(s) 44, 130, 227
DpnII GATC 3 cut(s) 42, 128, 225
DrdI GACNNNNNNGTC 1 cut(s) 172
DseDI GACNNNNNNGTC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 184
Esp3I CGTCTC 1 cut(s) 157
FaiI YATR 2 cut(s) 33, 260
FaqI GGGAC 1 cut(s) 160
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HapII CCGG 2 cut(s) 16, 236
Hin1I GRCGYC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HpaII CCGG 2 cut(s) 16, 236
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 123, 165
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 2 cut(s) 123, 165
Hpy99I CGWCG 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 307
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 167
Kzo9I GATC 3 cut(s) 42, 128, 225
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 3 cut(s) 29, 71, 249
Lsp1109I GCAGC 1 cut(s) 106
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 168
MalI GATC 3 cut(s) 44, 130, 227
MboI GATC 3 cut(s) 42, 128, 225
MboII GAAGA 1 cut(s) 224
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 1 cut(s) 42
MluCI AATT 3 cut(s) 255, 264, 299
MnlI CCTC 6 cut(s) 34, 73, 99, 157, 193, 205
MroXI GAANNNNTTC 1 cut(s) 280
MslI CAYNNNNRTG 1 cut(s) 160
MspI CCGG 2 cut(s) 16, 236
MunI CAATTG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 195
NdeII GATC 3 cut(s) 42, 128, 225
NmuCI GTSAC 1 cut(s) 168
OliI CACNNNNGTG 1 cut(s) 160
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 280
PkrI GCNGC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 86
PstI CTGCAG 1 cut(s) 96
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 2 cut(s) 83, 113
RsaNI GTAC 2 cut(s) 82, 112
RseI CAYNNNNRTG 1 cut(s) 160
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 3 cut(s) 42, 128, 225
Sau96I GGNCC 1 cut(s) 86
SetI ASST 5 cut(s) 26, 60, 91, 170, 282
SfcI CTRYAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 3 cut(s) 255, 264, 299
SsiI CCGC 2 cut(s) 47, 160
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 1 cut(s) 170
TasI AATT 3 cut(s) 255, 264, 299
TatI WGTACW 1 cut(s) 111
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 2 cut(s) 99, 139
VpaK11BI GGWCC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 280
ZraI GACGTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.