Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008905

Physical Location & Seq

Genomic Coordinates Reverse (-)

49016208 .. 49022555

Gene Structure 6348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAAACCCATAGCGTCATTCTTTGCCGAATTCTTCAAATGGGCCCAAGTTTGGACATTGGCTTCTTTTGTATCCTCGTCCAACAAGGCAAAGGTACACTTTGGGCTGTGAAAGCAATACTCCTGCCTTTGACTTTTCAGGGGAAACTTTACATCTCATCGTGGTCAGGTAATCAAAGCCTTTGGACTCCCAATATTGCTTTCGTTTTGGCTCAAGTCGGACCAGGTGATAGTAGTCACAGCATTCTAAAGGTGGATGCGAGAAGAGCAACTATAGTGCAGCCAAGTATCAGAACTCCGGGATTCAAACTCAAGGGTACTTCGGAACGGAGGTTGGGACTGGCTCTTTTTGGCTATGGAGTTTTGAAAAGATGCAGGGAGGAATTATATGTGTGCTGTGAGACGTACAACCCTGTTTTAGTAAATGTTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.07

Weight (kDa)

9.63

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008905)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462941 RchiOBHm_Chr3g0497371 RchiOBHm_Chr5g0068551
rosa_laevigata	RLG00000018025
rosa_multiflora	Rmu_ssc0000018.1_g000016
rosa_roxburghii	Rroxscaffold_3G00227890 Rroxscaffold_5G00363750 Rroxscaffold_6G00404310 Rroxscaffold_7G00199570
rosa_rugosa	Rorug04G0017900
rosa_samantha	Rh1CG043600 Rh3AG194500 Rh3AG336200 Rh3CG219300 Rh4AG095700 Rh4AG391800 Rh4BG093200 Rh4BG110900 Rh4DG088100 Rh4DG099000 Rh7BG391700 Rh7DG420900
rosa_wichuraiana	Rw1G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	3 cut(s)	97, 319, 407
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	38, 307, 367
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	43
ApaI	GGGCCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	43, 44, 221
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	395
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	2 cut(s)	225, 300
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	43, 44, 221
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	225, 300
BmsI	GCATC	2 cut(s)	247, 362
BpuEI	CTTGAG	2 cut(s)	198, 296
BpuMI	CCSGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	395
BsmBI	CGTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	45
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	45
BspQI	GCTCTTC	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 266
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	223, 298
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	43, 44, 221
CseI	GACGC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	96, 318, 406
CviJI	RGCY	8 cut(s)	45, 63, 107, 180, 212, 283, 344, 354
CviKI_1	RGCY	8 cut(s)	45, 63, 107, 180, 212, 283, 344, 354
CviQI	GTAC	3 cut(s)	96, 318, 406
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	395
FaiI	YATR	5 cut(s)	12, 275, 357, 388, 390
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	187, 303
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	221, 293, 325
Hpy8I	GTNNAC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	2 cut(s)	280, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 266
HpySE526I	ACGT	1 cut(s)	404
LguI	GCTCTTC	1 cut(s)	259
LpnPI	CCDG	9 cut(s)	125, 137, 153, 210, 237, 312, 326, 361, 426
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	247, 362
MabI	ACCWGGT	1 cut(s)	223
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	2 cut(s)	26, 276
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	2 cut(s)	30, 383
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	2 cut(s)	106, 199
MnlI	CCTC	3 cut(s)	86, 324, 373
MseI	TTAA	1 cut(s)	429
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	225, 300
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	113, 266
NciI	CCSGG	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	259
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	303
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	45
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	43, 44, 221
RsaI	GTAC	3 cut(s)	97, 319, 407
RsaNI	GTAC	3 cut(s)	96, 318, 406
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	281
Sau96I	GGNCC	3 cut(s)	43, 44, 221
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	225, 300
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	97, 172, 229, 255, 335, 407
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	247, 362
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	213, 311
SmoI	CTYRAG	2 cut(s)	213, 311
Sse9I	AATT	2 cut(s)	30, 383
SspI	AATATT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	223, 298
TaiI	ACGT	1 cut(s)	407
TasI	AATT	2 cut(s)	30, 383
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	343
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.