Rh4AG391800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
69789545 .. 69798646
9102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG391800.1

Sequence Viewer

Length: 258 bp
ATGGCATGGTTGGAATATTGTGCAAAGCTAGCCTGTAATGAACAGACACCTAGATTAATCATAGATATTTCTATCCGAAAAAGATATTTTTTAGGTTCCGAAGTATCTTTAACGAAACCAAAGCCTGGGGGAAACTTTACATCTTGTCGTAGTCCGGCTCAAGTCGGACCAGGTGATAGTAGTCACAGCATTCTAAAGGTGGCCGGAGACAAGAACAGCGACTATACCGTAGCCAAGTATCAGAACTCCAGGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.38

Weight (kDa)

9.33

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 125
AjnI CCWGG 3 cut(s) 124, 169, 248
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 201
AoxI GGCC 1 cut(s) 201
AseI ATTAAT 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 185
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 167
BciT130I CCWGG 3 cut(s) 126, 171, 250
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 29, 51
Bme1390I CCNGG 3 cut(s) 126, 171, 250
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 3 cut(s) 126, 171, 250
BmtI GCTAGC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 125
BseBI CCWGG 3 cut(s) 126, 171, 250
BseDI CCNNGG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 125
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 155, 204
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 1 cut(s) 203
BspANI GGCC 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 97
BspOI GCTAGC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 125
Bst2UI CCWGG 3 cut(s) 126, 171, 250
Bst4CI ACNGT 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 201
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 3 cut(s) 126, 171, 250
BstSCI CCNGG 3 cut(s) 124, 169, 248
BsuRI GGCC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 169
CviAII CATG 1 cut(s) 6
CviJI RGCY 6 cut(s) 28, 32, 124, 158, 203, 233
CviKI_1 RGCY 6 cut(s) 28, 32, 124, 158, 203, 233
EaeI YGGCCR 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 124, 169, 248
FaeI CATG 1 cut(s) 9
FaiI YATR 3 cut(s) 7, 62, 225
FatI CATG 1 cut(s) 5
FspBI CTAG 2 cut(s) 29, 51
GsuI CTGGAG 1 cut(s) 232
HaeIII GGCC 1 cut(s) 203
HapII CCGG 2 cut(s) 155, 204
Hin1II CATG 1 cut(s) 9
HpaII CCGG 2 cut(s) 155, 204
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 4 cut(s) 77, 100, 167, 243
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 9
LpnPI CCDG 8 cut(s) 46, 111, 138, 156, 168, 183, 217, 235
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 2 cut(s) 29, 51
MaeIII GTNAC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 145
MseI TTAA 3 cut(s) 56, 110, 256
MspI CCGG 2 cut(s) 155, 204
MspR9I CCNGG 3 cut(s) 126, 171, 250
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 3 cut(s) 126, 171, 250
MwoI GCNNNNNNNGC 1 cut(s) 29
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 182
PctI GAATGC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 248
PshBI ATTAAT 1 cut(s) 56
Psp6I CCWGG 3 cut(s) 124, 169, 248
PspGI CCWGG 3 cut(s) 124, 169, 248
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 56, 110, 256
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 3 cut(s) 126, 171, 250
SetI ASST 5 cut(s) 30, 52, 97, 175, 201
SexAI ACCWGGT 1 cut(s) 169
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
SspI AATATT 1 cut(s) 17
SspMI CTAG 2 cut(s) 29, 51
StyD4I CCNGG 3 cut(s) 124, 169, 248
TaaI ACNGT 1 cut(s) 229
Tru1I TTAA 3 cut(s) 56, 110, 256
Tru9I TTAA 3 cut(s) 56, 110, 256
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 54
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 56
XspI CTAG 2 cut(s) 29, 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.