Rh4BG093200

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008905
Physical Location & Seq
Reverse (-)
15943680 .. 15949769
6090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG093200.1

Sequence Viewer

Length: 279 bp
ATGGGTCAAGCTCTGAGCTCGGCATCCCTCTCGGTAACTCATCCCTGCACCTCCCAACAGTATCTTTACCTCACGTCGACGACTTCTCCTCATGAATGGAGCACTCCTATTTTTAATGTTCCACGTACTATCACCAAAAAAGGCTCTCCGTGCTGCAATGCTGAAGAGTACTTTGCGGATACTATTCTGAAAGCTCAACAGAAAAGTCTACTTGATCAAGGTAATAGAAGTGATCTACTGAAGATGCAACAAGAAAAGGCGAGATTAGAGCGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

92

Amino Acids

10.33

Weight (kDa)

8.88

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 271
AccI GTMKAC 2 cut(s) 77, 208
AciI CCGC 2 cut(s) 176, 271
AcuI CTGAAG 2 cut(s) 183, 260
AfaI GTAC 2 cut(s) 127, 170
AjiI CACGTC 1 cut(s) 75
AluBI AGCT 3 cut(s) 11, 18, 194
AluI AGCT 3 cut(s) 11, 18, 194
Alw21I GWGCWC 2 cut(s) 20, 104
ApeKI GCWGC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 124
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 20, 104
BbvI GCAGC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciVI GTATCC 1 cut(s) 172
BclI TGATCA 1 cut(s) 214
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 75
BmsI GCATC 2 cut(s) 32, 234
BsaAI YACGTR 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse3DI GCAATG 1 cut(s) 163
BseGI GGATG 2 cut(s) 23, 40
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 31
BsiHKAI GWGCWC 2 cut(s) 20, 104
Bsp1286I GDGCHC 2 cut(s) 20, 104
Bsp143I GATC 2 cut(s) 214, 232
BspACI CCGC 2 cut(s) 176, 271
BspCNI CTCAG 1 cut(s) 6
BspHI TCATGA 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 163
BssMI GATC 2 cut(s) 214, 232
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 2 cut(s) 23, 40
BstKTI GATC 2 cut(s) 217, 235
BstMBI GATC 2 cut(s) 214, 232
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 140
BsuI GTATCC 1 cut(s) 172
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 2 cut(s) 23, 40
CciI TCATGA 1 cut(s) 91
Csp6I GTAC 2 cut(s) 126, 169
CviAII CATG 1 cut(s) 92
CviJI RGCY 4 cut(s) 11, 18, 144, 194
CviKI_1 RGCY 4 cut(s) 11, 18, 144, 194
CviQI GTAC 2 cut(s) 126, 169
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 216, 234
DpnII GATC 2 cut(s) 214, 232
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 183, 260
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 1 cut(s) 95
FaiI YATR 1 cut(s) 93
FatI CATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 2 cut(s) 77, 208
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 2 cut(s) 10, 27
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 78, 209
Hpy188I TCNGA 2 cut(s) 15, 189
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 78, 209
Hpy99I CGWCG 2 cut(s) 79, 82
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4IV ACGT 2 cut(s) 74, 124
HpyCH4V TGCA 3 cut(s) 48, 156, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 74, 124
Hsp92II CATG 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 214, 232
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 58
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 32, 234
MaeII ACGT 2 cut(s) 74, 124
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 216, 234
MbiI CCGCTC 1 cut(s) 271
MboI GATC 2 cut(s) 214, 232
MboII GAAGA 2 cut(s) 176, 253
MhlI GDGCHC 2 cut(s) 20, 104
MnlI CCTC 4 cut(s) 38, 61, 80, 99
MseI TTAA 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 2 cut(s) 214, 232
NlaIII CATG 1 cut(s) 95
PagI TCATGA 1 cut(s) 91
PkrI GCNGC 1 cut(s) 155
Ppu21I YACGTR 1 cut(s) 125
Psp124BI GAGCTC 1 cut(s) 20
RsaI GTAC 2 cut(s) 127, 170
RsaNI GTAC 2 cut(s) 126, 169
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 2 cut(s) 214, 232
ScaI AGTACT 1 cut(s) 170
SduI GDGCHC 2 cut(s) 20, 104
SetI ASST 8 cut(s) 13, 20, 53, 72, 77, 127, 196, 223
SfaNI GCATC 2 cut(s) 32, 234
SgrDI CGTCGACG 1 cut(s) 76
SsiI CCGC 2 cut(s) 176, 271
SstI GAGCTC 1 cut(s) 20
TaaI ACNGT 1 cut(s) 60
TaiI ACGT 2 cut(s) 77, 127
TaqI TCGA 1 cut(s) 77
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 138
XmiI GTMKAC 2 cut(s) 77, 208
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.