Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000018.1

Orthogroup ID

OG0008905

Physical Location & Seq

Genomic Coordinates Reverse (-)

56112 .. 57959

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000018.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggattacgactaccggaaaacctcatcctatggcgcaaagatcccgccctaccacctgtcctcgtcatcacagccaatgtacggacctctgcagccgttgtcgtcgttgtcctccaagtcaacacgatcaaatgttggtcgctcctccgtctcacggcggtggacgtcaccgtccctttcctcgcgattgggcattcaagtttctattgaggcagagtatcggatcactcctccggaaaccatatgtcccagatctgagcttacaaccccagtcatagatgttgcttttggagaagaatggagcactcctatttttaatgttccactatcaccaaaaaagaaaagtctacttgatcaaggtaatagaagtgatctactgaagatgcaacaagaaaaggcgagattagagcggaagcagcgtgaagtgacaacaatacatagacgcagtaaaaatgtttatggggttgatccgccgggcaaagcttgtgttagctgtgattttggtgcagctcggccctgtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

175

Amino Acids

19.49

Weight (kDa)

9.66

Isoelectric Point (pI)

69.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008905)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462941 RchiOBHm_Chr3g0497371 RchiOBHm_Chr5g0068551
rosa_laevigata	RLG00000018025
rosa_multiflora	Rmu_ssc0000018.1_g000016
rosa_roxburghii	Rroxscaffold_3G00227890 Rroxscaffold_5G00363750 Rroxscaffold_6G00404310 Rroxscaffold_7G00199570
rosa_rugosa	Rorug04G0017900
rosa_samantha	Rh1CG043600 Rh3AG194500 Rh3AG336200 Rh3CG219300 Rh4AG095700 Rh4AG391800 Rh4BG093200 Rh4BG110900 Rh4DG088100 Rh4DG099000 Rh7BG391700 Rh7DG420900
rosa_wichuraiana	Rw1G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	172
AatII	GACGTC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	349
AccII	CGCG	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	4 cut(s)	47, 160, 412, 473
AclWI	GGATC	3 cut(s)	37, 233, 464
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	83, 156
AgsI	TTSAA	1 cut(s)	200
AleI	CACNNNNGTG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	262, 485, 495, 512
AluI	AGCT	4 cut(s)	262, 485, 495, 512
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	3 cut(s)	37, 233, 464
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	3 cut(s)	94, 418, 509
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	86, 516
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	162, 324
AvaII	GGWCC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	106, 430, 521
BceAI	ACGGC	2 cut(s)	82, 173
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	92
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	3 cut(s)	95, 419, 510
BlsI	GCNGC	3 cut(s)	96, 420, 511
Bme1390I	CCNGG	1 cut(s)	477
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	86, 516
BmrFI	CCNGG	1 cut(s)	477
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	375
BmuI	ACTGGG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	167
BsaWI	WCCGGW	2 cut(s)	15, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 156
Bse1I	ACTGG	1 cut(s)	272
BseAI	TCCGGA	1 cut(s)	235
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	83, 156
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	136, 222
BseXI	GCAGC	3 cut(s)	106, 430, 521
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	16, 236, 476
BslFI	GGGAC	2 cut(s)	160, 234
BslI	CCNNNNNNNGG	2 cut(s)	83, 156
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	160, 234
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
Bsp68I	TCGCGA	1 cut(s)	187
BspACI	CCGC	4 cut(s)	47, 160, 412, 473
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	1 cut(s)	250
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	96
BspPI	GGATC	3 cut(s)	37, 233, 464
BsrBI	CCGCTC	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
BssNI	GRCGYC	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	7 cut(s)	45, 131, 228, 257, 358, 376, 472
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	92
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	3 cut(s)	106, 430, 521
BstX2I	RGATCY	2 cut(s)	42, 254
BstYI	RGATCY	2 cut(s)	42, 254
BsuRI	GGCC	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	26
BtuMI	TCGCGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	86, 516
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	82
CviJI	RGCY	7 cut(s)	76, 97, 262, 485, 495, 512, 517
CviKI_1	RGCY	7 cut(s)	76, 97, 262, 485, 495, 512, 517
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	7 cut(s)	44, 130, 227, 256, 357, 375, 471
DpnII	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
DrdI	GACNNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	157
FaiI	YATR	6 cut(s)	33, 245, 247, 278, 441, 462
FaqI	GGGAC	2 cut(s)	160, 234
FauI	CCCGC	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	95, 419, 510
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	95, 419, 510
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	3 cut(s)	95, 419, 510
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	3 cut(s)	16, 236, 476
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	483
HpaII	CCGG	3 cut(s)	16, 236, 476
HphI	GGTGA	2 cut(s)	162, 324
Hpy166II	GTNNAC	3 cut(s)	123, 165, 350
Hpy188I	TCNGA	2 cut(s)	225, 259
Hpy188III	TCNNGA	2 cut(s)	186, 236
Hpy8I	GTNNAC	3 cut(s)	123, 165, 350
Hpy99I	CGWCG	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	94, 388, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	167
Hsp92I	GRCGYC	1 cut(s)	167
HspAI	GCGC	1 cut(s)	36
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
LmnI	GCTCC	2 cut(s)	149, 303
LpnPI	CCDG	6 cut(s)	29, 71, 249, 265, 285, 489
Lsp1109I	GCAGC	3 cut(s)	106, 430, 521
LweI	GCATC	1 cut(s)	375
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	168, 427
MalI	GATC	7 cut(s)	44, 130, 227, 256, 357, 375, 471
MbiI	CCGCTC	1 cut(s)	412
MboI	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
MboII	GAAGA	2 cut(s)	308, 394
MflI	RGATCY	2 cut(s)	42, 254
MhlI	GDGCHC	1 cut(s)	308
MnlI	CCTC	8 cut(s)	34, 73, 99, 124, 157, 193, 205, 243
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	160
MspI	CCGG	3 cut(s)	16, 236, 476
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	195
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	418
NciI	CCSGG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	168, 427
NruI	TCGCGA	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	160
PctI	GAATGC	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	96, 420, 511
PspPI	GGNCC	2 cut(s)	86, 516
PstI	CTGCAG	1 cut(s)	96
PsuI	RGATCY	2 cut(s)	42, 254
RruI	TCGCGA	1 cut(s)	187
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	3 cut(s)	95, 419, 510
Sau3AI	GATC	7 cut(s)	42, 128, 225, 254, 355, 373, 469
Sau96I	GGNCC	2 cut(s)	86, 516
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	9 cut(s)	26, 60, 91, 170, 264, 364, 487, 497, 514
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	160
SsiI	CCGC	4 cut(s)	47, 160, 412, 473
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	168, 427
TseI	GCWGC	3 cut(s)	94, 418, 509
Tsp45I	GTSAC	2 cut(s)	168, 427
TspGWI	ACGGA	2 cut(s)	99, 139
VpaK11BI	GGWCC	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.