Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008905

Physical Location & Seq

Genomic Coordinates Reverse (-)

46455235 .. 46461192

Gene Structure 5958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAAGGTTATGGAGTGTTAGAAGGAATCATGGTTGCATGTGGATTTCGACTACCGGAAAACCTCATCCTATGGCGCAAAGATCCCGCCCTACCTCCTGTCCTCGTCATCACGGGCGATGTACGGACCCTCTACGGCCGTTATCGTCGTTGTACTCCAAGTCAACACGATCAAATGTTGGTCACTCCTACGTCTCACGGCGGTGGACGTCACCGTCCCTTTCCTCGGGATTGGGCATTCAAGTTTCTATTGAGGCGAGTATCGGATCACTCCTCCGATCTGAGCTTACAACCCCGATCATAGATGTTGCTTTTGGAGAAGAATGGAGCACTCCTATTTTTAATGTTCCACTATCACCAAAAAAGGTTGTCCGTGCTGCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

128

Amino Acids

14.26

Weight (kDa)

10.83

Isoelectric Point (pI)

67.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008905)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462941 RchiOBHm_Chr3g0497371 RchiOBHm_Chr5g0068551
rosa_laevigata	RLG00000018025
rosa_multiflora	Rmu_ssc0000018.1_g000016
rosa_roxburghii	Rroxscaffold_3G00227890 Rroxscaffold_5G00363750 Rroxscaffold_6G00404310 Rroxscaffold_7G00199570
rosa_rugosa	Rorug04G0017900
rosa_samantha	Rh1CG043600 Rh3AG194500 Rh3AG336200 Rh3CG219300 Rh4AG095700 Rh4AG391800 Rh4BG093200 Rh4BG110900 Rh4DG088100 Rh4DG099000 Rh7BG391700 Rh7DG420900
rosa_wichuraiana	Rw1G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	214
AatII	GACGTC	1 cut(s)	212
AciI	CCGC	2 cut(s)	88, 202
AclWI	GGATC	2 cut(s)	78, 274
AcoI	YGGCCR	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	2 cut(s)	124, 155
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	242
AleI	CACNNNNGTG	1 cut(s)	202
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	2 cut(s)	78, 274
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	204, 348
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	364
BceAI	ACGGC	3 cut(s)	124, 152, 215
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	5 cut(s)	83, 170, 266, 278, 297
BspACI	CCGC	2 cut(s)	88, 202
BspANI	GGCC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	2 cut(s)	78, 274
BsrDI	GCAATG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	5 cut(s)	83, 170, 266, 278, 297
BssNI	GRCGYC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	5 cut(s)	86, 173, 269, 281, 300
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	5 cut(s)	83, 170, 266, 278, 297
BstMCI	CGRYCG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BstZI	CGGCCG	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	139
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	123, 154
CviAII	CATG	2 cut(s)	32, 40
CviJI	RGCY	2 cut(s)	139, 286
CviKI_1	RGCY	2 cut(s)	139, 286
CviQI	GTAC	2 cut(s)	123, 154
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	5 cut(s)	85, 172, 268, 280, 299
DpnII	GATC	5 cut(s)	83, 170, 266, 278, 297
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	137
EagI	CGGCCG	1 cut(s)	137
EclXI	CGGCCG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	127
Eco52I	CGGCCG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	35, 43
FaiI	YATR	5 cut(s)	13, 33, 41, 74, 302
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	31, 39
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	378
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	35, 43
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	204, 348
Hpy166II	GTNNAC	2 cut(s)	165, 207
Hpy188I	TCNGA	3 cut(s)	266, 278, 283
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	2 cut(s)	165, 207
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	216
HpyCH4IV	ACGT	2 cut(s)	192, 209
HpyCH4V	TGCA	2 cut(s)	39, 380
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	2 cut(s)	192, 209
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	35, 43
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	5 cut(s)	83, 170, 266, 278, 297
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	2 cut(s)	70, 112
Lsp1109I	GCAGC	1 cut(s)	364
MaeII	ACGT	2 cut(s)	192, 209
MaeIII	GTNAC	2 cut(s)	182, 210
MalI	GATC	5 cut(s)	85, 172, 268, 280, 299
MboI	GATC	5 cut(s)	83, 170, 266, 278, 297
MboII	GAAGA	1 cut(s)	332
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	332
MnlI	CCTC	7 cut(s)	75, 106, 114, 141, 235, 247, 284
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	202
MspI	CCGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	237
NdeII	GATC	5 cut(s)	83, 170, 266, 278, 297
NlaIII	CATG	2 cut(s)	35, 43
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	182, 210
NspI	RCATGY	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	202
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	2 cut(s)	124, 155
RsaNI	GTAC	2 cut(s)	123, 154
RseI	CAYNNNNRTG	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	5 cut(s)	83, 170, 266, 278, 297
Sau96I	GGNCC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	7 cut(s)	11, 67, 98, 195, 212, 288, 369
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	202
SsiI	CCGC	2 cut(s)	88, 202
TaaI	ACNGT	1 cut(s)	216
TaiI	ACGT	2 cut(s)	195, 212
TaqI	TCGA	1 cut(s)	50
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	2 cut(s)	182, 210
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	2 cut(s)	182, 210
TspGWI	ACGGA	2 cut(s)	140, 362
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	1 cut(s)	43
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.