Rh4AG095700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008905
Physical Location & Seq
Reverse (-)
20333548 .. 20340528
6981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG095700.1

Sequence Viewer

Length: 333 bp
ATGGATTACGACTACCGGAAAACCTCATCCTATGGCGCAAAGATCCCGCCCTACCACCTGTCCTCGTCATCACAGCCGATGTACGGACCTCTGCATCCGTTGTCGTCGTTGTACTCCAAGTCAACACGATCAAATGTTGGTCGCTCCTCCGTCTCACGGCGGGGAAACTTTACATCTCGTCGTAGTCCGGCTCAAGTCGGACCAGGTGATAGTAGTCACAGCATTCTAAAGGTGGATGCGAGAAGAGCAACTATAGTGCAGCCAAGTATCAGAACTCCGGGATTCAAACTCAAGGGTGAGGCTTTCTTTTTGTTTACCCATCGATTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.25

Weight (kDa)

10.8

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 47, 160
AclWI GGATC 1 cut(s) 37
AfaI GTAC 2 cut(s) 83, 113
AfiI CCNNNNNNNGG 2 cut(s) 83, 156
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 259
AspLEI GCGC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 86, 200
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 218, 308
AvaII GGWCC 2 cut(s) 86, 200
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 327
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
Bme1390I CCNGG 2 cut(s) 204, 279
Bme18I GGWCC 2 cut(s) 86, 200
BmgT120I GGNCC 2 cut(s) 86, 200
BmrFI CCNGG 2 cut(s) 204, 279
BmsI GCATC 2 cut(s) 103, 226
BpuEI CTTGAG 2 cut(s) 177, 275
BpuMI CCSGG 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 322
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 156
BseBI CCWGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 322
BseGI GGATG 3 cut(s) 26, 94, 241
BseLI CCNNNNNNNGG 2 cut(s) 83, 156
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 322
BsiSI CCGG 3 cut(s) 16, 188, 278
BslI CCNNNNNNNGG 2 cut(s) 83, 156
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 42, 128
BspACI CCGC 2 cut(s) 47, 160
BspDI ATCGAT 1 cut(s) 322
BspPI GGATC 1 cut(s) 37
BspQI GCTCTTC 1 cut(s) 238
BssMI GATC 2 cut(s) 42, 128
Bst2UI CCWGG 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 238
BstF5I GGATG 3 cut(s) 26, 94, 241
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 45, 131
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 42, 128
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 2 cut(s) 202, 277
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 322
BsuTUI ATCGAT 1 cut(s) 322
BtsCI GGATG 3 cut(s) 26, 94, 241
CfoI GCGC 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 86, 200
ClaI ATCGAT 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 202
Csp6I GTAC 2 cut(s) 82, 112
CviJI RGCY 4 cut(s) 76, 191, 262, 302
CviKI_1 RGCY 4 cut(s) 76, 191, 262, 302
CviQI GTAC 2 cut(s) 82, 112
DpnI GATC 2 cut(s) 44, 130
DpnII GATC 2 cut(s) 42, 128
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 86, 200
EcoRII CCWGG 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 157
FaiI YATR 2 cut(s) 33, 254
FauI CCCGC 2 cut(s) 54, 153
Fnu4HI GCNGC 1 cut(s) 260
FokI GGATG 3 cut(s) 13, 81, 248
Fsp4HI GCNGC 1 cut(s) 260
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 260
HapII CCGG 3 cut(s) 16, 188, 278
HhaI GCGC 1 cut(s) 38
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 1 cut(s) 282
HpaII CCGG 3 cut(s) 16, 188, 278
HphI GGTGA 2 cut(s) 218, 308
Hpy166II GTNNAC 2 cut(s) 123, 315
Hpy188I TCNGA 2 cut(s) 200, 272
Hpy8I GTNNAC 2 cut(s) 123, 315
Hpy99I CGWCG 2 cut(s) 109, 183
HpyCH4V TGCA 2 cut(s) 94, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 42, 128
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 6 cut(s) 29, 71, 189, 201, 216, 291
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 103, 226
MabI ACCWGGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 44, 130
MboI GATC 2 cut(s) 42, 128
MboII GAAGA 1 cut(s) 255
MflI RGATCY 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 5 cut(s) 34, 73, 99, 157, 292
MspI CCGG 3 cut(s) 16, 188, 278
MspR9I CCNGG 2 cut(s) 204, 279
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 279
NdeII GATC 2 cut(s) 42, 128
NmuCI GTSAC 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 238
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspPI GGNCC 2 cut(s) 86, 200
PsuI RGATCY 1 cut(s) 42
RsaI GTAC 2 cut(s) 83, 113
RsaNI GTAC 2 cut(s) 82, 112
SapI GCTCTTC 1 cut(s) 238
SatI GCNGC 1 cut(s) 260
Sau3AI GATC 2 cut(s) 42, 128
Sau96I GGNCC 2 cut(s) 86, 200
ScrFI CCNGG 2 cut(s) 204, 279
SetI ASST 5 cut(s) 26, 60, 91, 208, 234
SexAI ACCWGGT 1 cut(s) 202
SfaNI GCATC 2 cut(s) 103, 226
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 2 cut(s) 86, 200
SmlI CTYRAG 2 cut(s) 192, 290
SmoI CTYRAG 2 cut(s) 192, 290
SsiI CCGC 2 cut(s) 47, 160
StyD4I CCNGG 2 cut(s) 202, 277
TaqI TCGA 1 cut(s) 322
TatI WGTACW 1 cut(s) 111
TfiI GAWTC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 215
TspGWI ACGGA 3 cut(s) 87, 99, 139
VpaK11BI GGWCC 2 cut(s) 86, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.