Rroxscaffold_6G00404310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008905
Physical Location & Seq
Reverse (-)
26827287 .. 26829895
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404310.1

Sequence Viewer

Length: 444 bp
ATGGACACCCGTAGCGTCACGTCTTTGCCGAATTCTTCAAATGGGCCCAAATTTGGACATGAGCTTCTTTGTATTCTCGCAAGTCATGTTTCTCAATCCATGAAGCTTTCACGGCCCCCAAATTTAATGCAGGAACCTTCGGTGTATCGAGTGAACTCTGAGTCCCAACTTTCTCGTATAGAATTCGGGTACATGCATCAAGTACTACAGGGGAAACCTCACCGGGTGGGTGCTGTTGTTGAGGTGGATGCGAGAAGAGCAGCTATAGTGCAGCCAAGTATCAGAACTCCGGGATTCAAACTCAAGGGTGAGGCTTTCTTTTGTTTACCCACTGGTTTGTTTAGAATAGGTGTTTTGAAATGGAGGTTGGGACTGGCCCTTTTTGGCTATGGAGTTTTGAAAAGATGCAGGGAGGCATTATATGTGGTGTTTAAATGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.52

Weight (kDa)

10.15

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 31, 50, 121, 182
AdeI CACNNNGTG 1 cut(s) 226
AfaI GTAC 2 cut(s) 191, 204
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 4 cut(s) 39, 298, 358, 400
AjiI CACGTC 1 cut(s) 21
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 3 cut(s) 64, 106, 263
AluI AGCT 3 cut(s) 64, 106, 263
AoxI GGCC 3 cut(s) 44, 113, 375
ApaI GGGCCC 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 260, 271
ApoI RAATTY 4 cut(s) 31, 50, 121, 182
AspS9I GGNCC 4 cut(s) 44, 45, 114, 376
AsuC2I CCSGG 2 cut(s) 224, 291
AsuHPI GGTGA 2 cut(s) 212, 320
BaeGI GKGCMC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 272, 283
BceAI ACGGC 1 cut(s) 128
BcnI CCSGG 2 cut(s) 224, 291
BfmI CTRYAG 2 cut(s) 206, 264
BisI GCNGC 2 cut(s) 261, 272
BlsI GCNGC 2 cut(s) 262, 273
BmcAI AGTACT 1 cut(s) 204
Bme1390I CCNGG 2 cut(s) 224, 291
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 4 cut(s) 44, 45, 114, 376
BmiI GGNNCC 3 cut(s) 46, 116, 135
BmrFI CCNGG 2 cut(s) 224, 291
BmsI GCATC 3 cut(s) 205, 238, 395
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 2 cut(s) 224, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 337, 378
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 2 cut(s) 337, 378
BseSI GKGCMC 1 cut(s) 48
BseXI GCAGC 2 cut(s) 272, 283
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 3 cut(s) 46, 115, 377
BsiSI CCGG 2 cut(s) 223, 290
BslFI GGGAC 2 cut(s) 148, 384
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 148, 384
BsnI GGCC 3 cut(s) 46, 115, 377
Bsp120I GGGCCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 48
BspANI GGCC 3 cut(s) 46, 115, 377
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 46, 116, 135
BspQI GCTCTTC 1 cut(s) 250
BsrI ACTGG 2 cut(s) 337, 378
Bst6I CTCTTC 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 112, 257
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 222, 289
BstSFI CTRYAG 2 cut(s) 206, 264
BstSLI GKGCMC 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 272, 283
BsuRI GGCC 3 cut(s) 46, 115, 377
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 330
Cfr13I GGNCC 4 cut(s) 44, 45, 114, 376
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 190, 203
CviAII CATG 4 cut(s) 59, 86, 100, 193
CviJI RGCY 9 cut(s) 46, 64, 106, 115, 263, 274, 314, 377, 387
CviKI_1 RGCY 9 cut(s) 46, 64, 106, 115, 263, 274, 314, 377, 387
CviQI GTAC 2 cut(s) 190, 203
DdeI CTNAG 1 cut(s) 159
DraI TTTAAA 1 cut(s) 433
DraIII CACNNNGTG 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 48
EcoRI GAATTC 2 cut(s) 31, 182
EcoT22I ATGCAT 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 4 cut(s) 62, 89, 103, 196
FaiI YATR 9 cut(s) 60, 87, 101, 179, 194, 266, 390, 421, 423
FaqI GGGAC 2 cut(s) 148, 384
FatI CATG 4 cut(s) 58, 85, 99, 192
Fnu4HI GCNGC 2 cut(s) 261, 272
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 2 cut(s) 261, 272
GluI GCNGC 2 cut(s) 261, 272
HaeIII GGCC 3 cut(s) 46, 115, 377
HapII CCGG 2 cut(s) 223, 290
HgaI GACGC 1 cut(s) 4
Hin1II CATG 4 cut(s) 62, 89, 103, 196
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 161, 294
HpaII CCGG 2 cut(s) 223, 290
HphI GGTGA 2 cut(s) 212, 320
Hpy166II GTNNAC 2 cut(s) 154, 326
Hpy188I TCNGA 2 cut(s) 160, 284
Hpy8I GTNNAC 2 cut(s) 154, 326
HpyAV CCTTC 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 4 cut(s) 130, 196, 271, 408
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 257
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 4 cut(s) 62, 89, 103, 196
LguI GCTCTTC 1 cut(s) 250
LpnPI CCDG 7 cut(s) 116, 194, 236, 303, 318, 359, 394
Lsp1109I GCAGC 2 cut(s) 272, 283
LweI GCATC 3 cut(s) 205, 238, 395
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 16
MboII GAAGA 2 cut(s) 27, 267
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 5 cut(s) 31, 50, 121, 182, 439
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 5 cut(s) 228, 235, 304, 357, 406
Mph1103I ATGCAT 1 cut(s) 198
MseI TTAA 2 cut(s) 125, 432
MspI CCGG 2 cut(s) 223, 290
MspR9I CCNGG 2 cut(s) 224, 291
MwoI GCNNNNNNNGC 2 cut(s) 112, 257
NciI CCSGG 2 cut(s) 224, 291
NlaIII CATG 4 cut(s) 62, 89, 103, 196
NlaIV GGNNCC 3 cut(s) 46, 116, 135
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 1 cut(s) 294
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 2 cut(s) 262, 273
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 46, 116, 135
PspOMI GGGCCC 1 cut(s) 44
PspPI GGNCC 4 cut(s) 44, 45, 114, 376
RsaI GTAC 2 cut(s) 191, 204
RsaNI GTAC 2 cut(s) 190, 203
SapI GCTCTTC 1 cut(s) 250
SaqAI TTAA 2 cut(s) 125, 432
SatI GCNGC 2 cut(s) 261, 272
Sau96I GGNCC 4 cut(s) 44, 45, 114, 376
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 224, 291
SduI GDGCHC 1 cut(s) 48
SetI ASST 9 cut(s) 23, 66, 108, 139, 220, 246, 265, 352, 368
SfaNI GCATC 3 cut(s) 205, 238, 395
SfcI CTRYAG 2 cut(s) 206, 264
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 5 cut(s) 31, 50, 121, 182, 439
StyD4I CCNGG 2 cut(s) 222, 289
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 148
TasI AATT 5 cut(s) 31, 50, 121, 182, 439
TatI WGTACW 1 cut(s) 202
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 2 cut(s) 125, 432
Tru9I TTAA 2 cut(s) 125, 432
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 2 cut(s) 260, 271
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 1 cut(s) 337
XapI RAATTY 4 cut(s) 31, 50, 121, 182
XceI RCATGY 1 cut(s) 196
ZrmI AGTACT 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.