RchiOBHm_Chr3g0497371

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
49352400 .. 49353711
1312 bp
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UTR
Exon/CDS
Intron
PRQ45956

Sequence Viewer

Length: 141 bp
ATGATAGCTCAAGTCGGACCAGGTGATAGTAGTCACAGCATTCTAAAGGTGGATGCGAGAAGAGCAACTATAGTGCAGCCAAGTATCAGAACTCCGGGATTCAAACTCAAGGGTGAGGCTTTCTTTTTGTTTACCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

46

Amino Acids

5.03

Weight (kDa)

10.27

Isoelectric Point (pI)

20.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 35, 125
AvaII GGWCC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 21
BcnI CCSGG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 21, 96
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 21, 96
BmsI GCATC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 95
BsmI GAATGC 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 2 cut(s) 19, 94
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 17
CsiI ACCWGGT 1 cut(s) 19
CviJI RGCY 3 cut(s) 8, 79, 119
CviKI_1 RGCY 3 cut(s) 8, 79, 119
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 19
FaiI YATR 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
HapII CCGG 1 cut(s) 95
HinfI GANTC 1 cut(s) 99
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 35, 125
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 17, 89
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
LguI GCTCTTC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 6, 33, 108
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 43
MabI ACCWGGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 32
MboII GAAGA 1 cut(s) 72
MnlI CCTC 1 cut(s) 109
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 21, 96
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 55
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 55
SatI GCNGC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 21, 96
SetI ASST 3 cut(s) 10, 25, 51
SexAI ACCWGGT 1 cut(s) 19
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 69
SgeI CNNG 8 cut(s) 23, 32, 33, 69, 93, 107, 108, 121
SinI GGWCC 1 cut(s) 17
SmlI CTYRAG 2 cut(s) 9, 107
SmoI CTYRAG 2 cut(s) 9, 107
StyD4I CCNGG 2 cut(s) 19, 94
TfiI GAWTC 1 cut(s) 99
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.