Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005243

Physical Location & Seq

Genomic Coordinates Forward (+)

13761239 .. 13769591

Gene Structure 8353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36964

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGTGGAGGCTGAAGGTTTCAGAAGGAGAAAGAGATGGTAATCCATGGCTCACAAGTGTGAATAATCACATCGGGAGACAATTTTGGGAGTTCGACCCAAATCTCGGAACACCGGAAGAGAGAGTTCAGGTGGAAAAAGCACGTCTTGAGTTTCGTAACAATCGTTTTCGATCCAAACATAGTTCTGATCTATTAATGAGACTTCAGTTTGCAAAGGAGAAAGAAAGTGATCGAATGGAGCTACCAACTCAGGTGAAAATAAAAAGTGAAGAAGAAATTAATGAAGAAGTAGTAACAACCACATTGAGGAGGGGGTTGAGATTTTACTCGACTCTTCAGGCTGAGGATGGTTTTTGGCCTGGTGACTATAGCGGTCCTCTGTTTCTTCTACCTGGCTTGATTATTGGATTATCCGTAACAGGGGCCCTTGATGCAATCTTGCCACACGAGCATTCAAAGGAGATCCGCCGCTATCTTTATAACCATCAGAACAAAGATGGAGGTTGGGGACTGCATATAGAAGGGCCAAGCACAATGTTTTGTACAGCTCTGTCCTATGTGAGTTTGAGATTGCTCGGAGAGGAGATGGACGGCGGTGATGGCGCCATGGAGAAGGCAAGAAAATGGATTCTTCACCGTGGAGGAGTTACCACCATCCCATCATGGGGAAAGATGTGGCTCTCAGTACTTGGTGTATATGAATGGGATGGTAACAATCCACTGCCTCCTGAACTGTGGCTTTTACCGTACTTTCTCCCAGTACACCCAGGTTTAGGCCGAATGTGGTGTCACTGTAGGATGGTTTACCTGCCCATGTCATATTTATACGGCAAGAGATTTGTTGGTCCCATCAACGGCCTTATTTTATCCCTCAGAACAGAGCTTTATACCTTTCCCTATCACCTGATTGATTGGGACCAAGCAAGAAATCTATGCGCCAAGGTACTAAACATGATTTGTTGTTGGGTGGAGGATCAGAATTCAGAAGCGTACAAGTGTCATCTTTCAAGAATCAAAGATTATCTATGGGTTGCAGAAGATGGAATGAAAATGCAGGGATACAATGGATCTCAATGCTGGGATGTTGCTTTGGCTGTTCAGGCAATCCTTTCTACCAACCTTGTGAATGAATATGGTTCCGTGCTTAAGAAGGCGCACTATTTCATCAAAAATACACAAGTTAGGAGAGACAGCTATGGCAATCTGCGCTACTGGTACCGTCACATTTCTAAGGGCGGATGGGCCTTTTCCACTCCAGACAATGGTTGGACTGTCTCAGATAGTACAGCTGAAGGTTTGAAGGCAGCACTCTTATTATCACGTATGCCCTGCGAAATTGTGGGAGAAGCAATAGCAGCTGATCAACTGCATGATGCTGTTAATGTAGTATTATCCCTACAGGTAAAACTTGACCTTGTGACATCTTACAGTACAATTGCAAAGTATTTATGTAATCACAAGAGCAATGACACGTATTTTATTTCATTGACACAACAGAACAGCAATGGTGGGTTTGCATCATATGAACTCACAAGATCCTATGCCTGGTTGGAGATGATCAATCCAGCTGAAACATTTGGAGATATCATGAATGATTATCAGTCTGTGGAATGCACATCATCAGCAGTTGAAGGCCTTAATGCATTCATGAAATTATATCCAGGGCATCGGAAGAAAGAAATAGAAGCATGTATTGCAAAGGCAGTTCAGTTCATCGAGAGCATACAACTTCCTGATGGCTCATGGTATGGGTCTTGGGGAGTTTGCTACACCTATGGAACATGGTTTGGAATAAAGGGGTTAATGGCTGGTGGCAAGACCTATCAGACAAGTAATAGCATTAGAAGAGCATGCCATTTCTTGCTATCTAAGCAACTCGATTCAGGTGGCTGGGGAGAGAGTTTTCTCTCATGCCAAAACAAGGTATACACAAATCTCGAAGGGAACAAACCACATATAGTAAACACTGGATGGGCTATGTTGGCTCTAATTGAAGCAGGGCAGGGTGAAAGGGACCCGATCCCCTTGCATCGAGCAGCAAAGGTATTGATCAATTCACAGATGGAAAATGGAGATTTCCCACAACAGGTATTTGTTATTGTAAATACAAGTTGCAGAGGCATAACAATACAATTTACAGCCTTGGACTTACTATGTTTATTTCAACAGCAAATCATGGGAGTCTTCAGCAAAAATTGCATGATTAGTTACTCCGCCTACAGAAATATCTTCCCTATCTGGGCACTTGGAGAGTATCGAAACCGGGTACTGGTACTTCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

761

Amino Acids

86.63

Weight (kDa)

7.03

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	112 - 301	2.2e-33	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	496 - 698	4e-32	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45130 AT3G45130 AT3G45130 AT3G45130 AT3G45130
fragaria_vesca	FvH4_4g06000
malus_domestica	MD16G1237700.v1.1
prunus_persica	Prupe.1G063500_v2.0.a1 Prupe.1G063500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c45g0503831 RchiOBHm_Chr1g0332701 RchiOBHm_Chr4g0397241 RchiOBHm_Chr4g0397271 RchiOBHm_Chr4g0397301 RchiOBHm_Chr4g0397321
rosa_laevigata	RLG00000009434 RLG00000009437
rosa_multiflora	Rmu_sc0003239.1_g000001 Rmu_sc0003929.1_g000015 Rmu_sc0008546.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342180 Rroxscaffold_5G00342240 Rroxscaffold_5G00342320
rosa_rugosa	Rorug03G0343000 Rorug03G0343900 Rorug03G0343900
rosa_wichuraiana	Rw4G006330 Rw4G006340 Rw4G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
Acc36I	ACCTGC	1 cut(s)	816
Acc65I	GGTACC	1 cut(s)	1215
AccB1I	GGYRCC	2 cut(s)	602, 1215
AccB7I	CCANNNNNTGG	1 cut(s)	1262
AccI	GTMKAC	1 cut(s)	1926
AciI	CCGC	6 cut(s)	372, 466, 469, 594, 1236, 2214
AclWI	GGATC	6 cut(s)	165, 457, 981, 1075, 1530, 2014
AcsI	RAATTY	1 cut(s)	979
AcuI	CTGAAG	5 cut(s)	32, 188, 320, 1311, 2170
AcyI	GRCGYC	1 cut(s)	603
AflII	CTTAAG	1 cut(s)	1145
AflIII	ACRYGT	1 cut(s)	1470
AgsI	TTSAA	6 cut(s)	456, 1008, 1300, 1631, 1994, 2165
AjiI	CACGTC	1 cut(s)	143
AjnI	CCWGG	5 cut(s)	358, 391, 766, 1544, 1660
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	7 cut(s)	241, 548, 883, 1194, 1289, 1358, 1568
AluI	AGCT	7 cut(s)	241, 548, 883, 1194, 1289, 1358, 1568
Alw26I	GTCTC	4 cut(s)	70, 193, 1182, 1279
AlwI	GGATC	6 cut(s)	165, 457, 981, 1075, 1530, 2014
AoxI	GGCC	7 cut(s)	356, 423, 524, 775, 856, 1242, 1633
ApaI	GGGCCC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	1304, 1355, 2036
ApoI	RAATTY	1 cut(s)	979
ArsI	GACNNNNNNTTYG	2 cut(s)	772, 804
AseI	ATTAAT	2 cut(s)	194, 279
Asp718I	GGTACC	1 cut(s)	1215
AspLEI	GCGC	4 cut(s)	605, 938, 1156, 1209
AspS9I	GGNCC	8 cut(s)	374, 423, 424, 524, 845, 916, 1242, 2014
AsuC2I	CCSGG	1 cut(s)	2264
AsuHPI	GGTGA	6 cut(s)	265, 374, 608, 626, 893, 2018
AvaII	GGWCC	4 cut(s)	374, 845, 916, 2014
BaeGI	GKGCMC	2 cut(s)	427, 2245
BanI	GGYRCC	2 cut(s)	602, 1215
BanII	GRGCYC	1 cut(s)	427
BarI	GAAGNNNNNNTAC	1 cut(s)	2259
BauI	CACGAG	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	2176
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	1316, 1367, 2048
BceAI	ACGGC	3 cut(s)	607, 844, 871
BcgI	CGANNNNNNTGC	2 cut(s)	2008, 2042
BciT130I	CCWGG	5 cut(s)	360, 393, 768, 1546, 1662
BciVI	GTATCC	1 cut(s)	1052
BclI	TGATCA	3 cut(s)	1360, 1557, 2049
BcnI	CCSGG	1 cut(s)	2264
BcoDI	GTCTC	4 cut(s)	70, 193, 1182, 1279
BfmI	CTRYAG	4 cut(s)	367, 793, 1397, 2218
BfoI	RGCGCY	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	1145
BfuAI	ACCTGC	1 cut(s)	816
BfuI	GTATCC	1 cut(s)	1052
BisI	GCNGC	4 cut(s)	469, 1305, 1356, 2037
BlsI	GCNGC	4 cut(s)	470, 1306, 1357, 2038
BmcAI	AGTACT	1 cut(s)	687
Bme1390I	CCNGG	6 cut(s)	360, 393, 768, 1546, 1662, 2264
Bme18I	GGWCC	4 cut(s)	374, 845, 916, 2014
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	8 cut(s)	374, 423, 424, 524, 845, 916, 1242, 2014
BmiI	GGNNCC	9 cut(s)	424, 425, 604, 847, 917, 1138, 1217, 2015, 2016
BmrFI	CCNGG	6 cut(s)	360, 393, 768, 1546, 1662, 2264
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	5 cut(s)	421, 1363, 1526, 1675, 2038
BmuI	ACTGGG	1 cut(s)	752
BpiI	GAAGAC	1 cut(s)	2176
BpmI	CTGGAG	1 cut(s)	1239
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	2264
BsaAI	YACGTR	2 cut(s)	1322, 1473
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	603
BsaJI	CCNNGG	7 cut(s)	44, 606, 637, 766, 939, 1661, 2142
BsaWI	WCCGGW	1 cut(s)	112
Bse1I	ACTGG	4 cut(s)	758, 1217, 1972, 2274
Bse3DI	GCAATG	2 cut(s)	1471, 1510
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	5 cut(s)	360, 393, 768, 1546, 1662
BseDI	CCNNGG	7 cut(s)	44, 606, 637, 766, 939, 1661, 2142
BseGI	GGATG	7 cut(s)	352, 654, 712, 804, 1087, 1244, 1976
BseJI	GATNNNNATC	1 cut(s)	39
BseMI	GCAATG	2 cut(s)	1471, 1510
BseMII	CTCAG	5 cut(s)	263, 333, 696, 886, 1290
BseNI	ACTGG	4 cut(s)	758, 1217, 1972, 2274
BseRI	GAGGAG	3 cut(s)	322, 596, 657
BseSI	GKGCMC	2 cut(s)	427, 2245
BseXI	GCAGC	3 cut(s)	1316, 1367, 2048
BseYI	CCCAGC	2 cut(s)	1077, 1890
BshFI	GGCC	7 cut(s)	358, 425, 526, 777, 858, 1244, 1635
BshNI	GGYRCC	2 cut(s)	602, 1215
BsiSI	CCGG	2 cut(s)	113, 2263
BslFI	GGGAC	4 cut(s)	522, 831, 929, 2027
BsmAI	GTCTC	4 cut(s)	70, 193, 1182, 1279
BsmFI	GGGAC	4 cut(s)	522, 831, 929, 2027
BsmI	GAATGC	3 cut(s)	451, 1616, 1643
BsnI	GGCC	7 cut(s)	358, 425, 526, 777, 858, 1244, 1635
Bsp120I	GGGCCC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	427, 2245
Bsp1407I	TGTACA	1 cut(s)	542
Bsp19I	CCATGG	2 cut(s)	44, 606
BspACI	CCGC	6 cut(s)	372, 466, 469, 594, 1236, 2214
BspANI	GGCC	7 cut(s)	358, 425, 526, 777, 858, 1244, 1635
BspCNI	CTCAG	5 cut(s)	262, 334, 695, 885, 1289
BspHI	TCATGA	2 cut(s)	1587, 1647
BspLI	GGNNCC	9 cut(s)	424, 425, 604, 847, 917, 1138, 1217, 2015, 2016
BspMI	ACCTGC	1 cut(s)	816
BspPI	GGATC	6 cut(s)	165, 457, 981, 1075, 1530, 2014
BspQI	GCTCTTC	1 cut(s)	1840
BspT107I	GGYRCC	2 cut(s)	602, 1215
BspTI	CTTAAG	1 cut(s)	1145
BsrDI	GCAATG	2 cut(s)	1471, 1510
BsrGI	TGTACA	1 cut(s)	542
BsrI	ACTGG	4 cut(s)	758, 1217, 1972, 2274
BssECI	CCNNGG	7 cut(s)	44, 606, 637, 766, 939, 1661, 2142
BssNAI	GTATAC	1 cut(s)	1927
BssNI	GRCGYC	1 cut(s)	603
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	4 cut(s)	44, 606, 939, 2142
Bst1107I	GTATAC	1 cut(s)	1927
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	5 cut(s)	360, 393, 768, 1546, 1662
Bst4CI	ACNGT	7 cut(s)	638, 735, 747, 794, 1220, 1273, 1430
Bst6I	CTCTTC	3 cut(s)	111, 339, 1840
BstACI	GRCGYC	1 cut(s)	603
BstAFI	CTTAAG	1 cut(s)	1145
BstAPI	GCANNNNNTGC	2 cut(s)	1694, 2196
BstAUI	TGTACA	1 cut(s)	542
BstBAI	YACGTR	2 cut(s)	1322, 1473
BstC8I	GCNNGC	1 cut(s)	1852
BstDEI	CTNAG	7 cut(s)	249, 342, 682, 872, 1230, 1276, 1869
BstDSI	CCRYGG	3 cut(s)	44, 606, 637
BstF5I	GGATG	7 cut(s)	352, 654, 712, 804, 1087, 1244, 1976
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	4 cut(s)	605, 938, 1156, 1209
BstMAI	GTCTC	4 cut(s)	70, 193, 1182, 1279
BstNI	CCWGG	5 cut(s)	360, 393, 768, 1546, 1662
BstNSI	RCATGY	2 cut(s)	1692, 1854
BstSCI	CCNGG	6 cut(s)	358, 391, 766, 1544, 1660, 2262
BstSFI	CTRYAG	4 cut(s)	367, 793, 1397, 2218
BstSLI	GKGCMC	2 cut(s)	427, 2245
BstV1I	GCAGC	3 cut(s)	1316, 1367, 2048
BstV2I	GAAGAC	1 cut(s)	2176
BstX2I	RGATCY	3 cut(s)	462, 1067, 1535
BstYI	RGATCY	3 cut(s)	462, 1067, 1535
BstZ17I	GTATAC	1 cut(s)	1927
BsuI	GTATCC	1 cut(s)	1052
BsuRI	GGCC	7 cut(s)	358, 425, 526, 777, 858, 1244, 1635
BtgI	CCRYGG	3 cut(s)	44, 606, 637
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	7 cut(s)	352, 654, 712, 804, 1087, 1244, 1976
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	3 cut(s)	719, 790, 1965
BveI	ACCTGC	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	1852
CciI	TCATGA	2 cut(s)	1587, 1647
CfoI	GCGC	4 cut(s)	605, 938, 1156, 1209
Cfr13I	GGNCC	8 cut(s)	374, 423, 424, 524, 845, 916, 1242, 2014
DdeI	CTNAG	7 cut(s)	249, 342, 682, 872, 1230, 1276, 1869
DinI	GGCGCC	1 cut(s)	604
Eam1104I	CTCTTC	3 cut(s)	111, 339, 1840
EarI	CTCTTC	3 cut(s)	111, 339, 1840
EciI	GGCGGA	3 cut(s)	455, 1251, 2203
Eco130I	CCWWGG	4 cut(s)	44, 606, 939, 2142
Eco147I	AGGCCT	1 cut(s)	1635
Eco24I	GRGCYC	1 cut(s)	427
Eco32I	GATATC	1 cut(s)	1585
Eco47I	GGWCC	4 cut(s)	374, 845, 916, 2014
Eco57I	CTGAAG	5 cut(s)	32, 188, 320, 1311, 2170
EcoO109I	RGGNCCY	3 cut(s)	423, 424, 2014
EcoRI	GAATTC	1 cut(s)	979
EcoRII	CCWGG	5 cut(s)	358, 391, 766, 1544, 1660
EcoRV	GATATC	1 cut(s)	1585
EcoT14I	CCWWGG	4 cut(s)	44, 606, 939, 2142
EcoT22I	ATGCAT	1 cut(s)	1645
EcoT38I	GRGCYC	1 cut(s)	427
EgeI	GGCGCC	1 cut(s)	604
EheI	GGCGCC	1 cut(s)	604
ErhI	CCWWGG	4 cut(s)	44, 606, 939, 2142
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	4 cut(s)	522, 831, 929, 2027
FauNDI	CATATG	1 cut(s)	1522
FbaI	TGATCA	3 cut(s)	1360, 1557, 2049
FblI	GTMKAC	1 cut(s)	1926
Fnu4HI	GCNGC	4 cut(s)	469, 1305, 1356, 2037
FokI	GGATG	7 cut(s)	359, 641, 719, 811, 1094, 1251, 1983
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	4 cut(s)	469, 1305, 1356, 2037
GlaI	GCGC	4 cut(s)	604, 937, 1155, 1208
GluI	GCNGC	4 cut(s)	469, 1305, 1356, 2037
GsaI	CCCAGC	2 cut(s)	1081, 1894
GsuI	CTGGAG	1 cut(s)	1239
HaeII	RGCGCY	1 cut(s)	606
HaeIII	GGCC	7 cut(s)	358, 425, 526, 777, 858, 1244, 1635
HapII	CCGG	2 cut(s)	113, 2263
HhaI	GCGC	4 cut(s)	605, 938, 1156, 1209
Hin1I	GRCGYC	1 cut(s)	603
Hin6I	GCGC	4 cut(s)	603, 936, 1154, 1207
HinP1I	GCGC	4 cut(s)	603, 936, 1154, 1207
HinfI	GANTC	5 cut(s)	331, 628, 1011, 1880, 2181
HpaII	CCGG	2 cut(s)	113, 2263
HphI	GGTGA	6 cut(s)	265, 374, 608, 626, 893, 2018
Hpy166II	GTNNAC	4 cut(s)	763, 805, 1927, 1963
Hpy8I	GTNNAC	4 cut(s)	763, 805, 1927, 1963
HpyAV	CCTTC	9 cut(s)	7, 17, 515, 607, 1144, 1286, 1294, 1625, 1934
HpyCH4III	ACNGT	7 cut(s)	638, 735, 747, 794, 1220, 1273, 1430
HpyCH4IV	ACGT	3 cut(s)	142, 1321, 1472
HpyF3I	CTNAG	7 cut(s)	249, 342, 682, 872, 1230, 1276, 1869
HpySE526I	ACGT	3 cut(s)	142, 1321, 1472
Hsp92I	GRCGYC	1 cut(s)	603
HspAI	GCGC	4 cut(s)	603, 936, 1154, 1207
KasI	GGCGCC	1 cut(s)	602
KflI	GGGWCCC	1 cut(s)	2014
KpnI	GGTACC	1 cut(s)	1219
Ksp22I	TGATCA	3 cut(s)	1360, 1557, 2049
LguI	GCTCTTC	1 cut(s)	1840
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	3 cut(s)	1316, 1367, 2048
LweI	GCATC	5 cut(s)	421, 1363, 1526, 1675, 2038
MaeII	ACGT	3 cut(s)	142, 1321, 1472
MfeI	CAATTG	1 cut(s)	1434
MflI	RGATCY	3 cut(s)	462, 1067, 1535
MhlI	GDGCHC	2 cut(s)	427, 2245
Mly113I	GGCGCC	1 cut(s)	603
MlyI	GAGTC	2 cut(s)	325, 2190
MmeI	TCCRAC	2 cut(s)	1247, 1530
Mph1103I	ATGCAT	1 cut(s)	1645
MseI	TTAA	6 cut(s)	194, 279, 1146, 1380, 1638, 1802
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	3 cut(s)	1289, 1358, 1568
MspCI	CTTAAG	1 cut(s)	1145
MspI	CCGG	2 cut(s)	113, 2263
MspR9I	CCNGG	6 cut(s)	360, 393, 768, 1546, 1662, 2264
MunI	CAATTG	1 cut(s)	1434
Mva1269I	GAATGC	3 cut(s)	451, 1616, 1643
MvaI	CCWGG	5 cut(s)	360, 393, 768, 1546, 1662
NarI	GGCGCC	1 cut(s)	603
NciI	CCSGG	1 cut(s)	2264
NcoI	CCATGG	2 cut(s)	44, 606
NdeI	CATATG	1 cut(s)	1522
NlaIV	GGNNCC	9 cut(s)	424, 425, 604, 847, 917, 1138, 1217, 2015, 2016
NmuCI	GTSAC	4 cut(s)	362, 788, 1220, 1417
NsiI	ATGCAT	1 cut(s)	1645
NspI	RCATGY	2 cut(s)	1692, 1854
OliI	CACNNNNGTG	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	1854
PagI	TCATGA	2 cut(s)	1587, 1647
PceI	AGGCCT	1 cut(s)	1635
PciSI	GCTCTTC	1 cut(s)	1840
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PctI	GAATGC	3 cut(s)	451, 1616, 1643
PfeI	GAWTC	3 cut(s)	628, 1011, 1880
PflMI	CCANNNNNTGG	1 cut(s)	1262
PkrI	GCNGC	4 cut(s)	470, 1306, 1357, 2038
PleI	GAGTC	2 cut(s)	325, 2189
PluTI	GGCGCC	1 cut(s)	606
PpsI	GAGTC	2 cut(s)	325, 2189
Ppu21I	YACGTR	2 cut(s)	1322, 1473
PpuMI	RGGWCCY	1 cut(s)	2014
PshBI	ATTAAT	2 cut(s)	194, 279
PsiI	TTATAA	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	2014
Psp6I	CCWGG	5 cut(s)	358, 391, 766, 1544, 1660
PspFI	CCCAGC	2 cut(s)	1077, 1890
PspGI	CCWGG	5 cut(s)	358, 391, 766, 1544, 1660
PspN4I	GGNNCC	9 cut(s)	424, 425, 604, 847, 917, 1138, 1217, 2015, 2016
PspOMI	GGGCCC	1 cut(s)	423
PspPI	GGNCC	8 cut(s)	374, 423, 424, 524, 845, 916, 1242, 2014
PspPPI	RGGWCCY	1 cut(s)	2014
PsuI	RGATCY	3 cut(s)	462, 1067, 1535
PvuII	CAGCTG	3 cut(s)	1289, 1358, 1568
RseI	CAYNNNNRTG	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	1840
SaqAI	TTAA	6 cut(s)	194, 279, 1146, 1380, 1638, 1802
SatI	GCNGC	4 cut(s)	469, 1305, 1356, 2037
Sau96I	GGNCC	8 cut(s)	374, 423, 424, 524, 845, 916, 1242, 2014
ScaI	AGTACT	1 cut(s)	687
SchI	GAGTC	2 cut(s)	325, 2190
ScrFI	CCNGG	6 cut(s)	360, 393, 768, 1546, 1662, 2264
SduI	GDGCHC	2 cut(s)	427, 2245
SfaNI	GCATC	5 cut(s)	421, 1363, 1526, 1675, 2038
SfcI	CTRYAG	4 cut(s)	367, 793, 1397, 2218
SfoI	GGCGCC	1 cut(s)	604
SinI	GGWCC	4 cut(s)	374, 845, 916, 2014
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	146, 1145
SmoI	CTYRAG	2 cut(s)	146, 1145
SphI	GCATGC	1 cut(s)	1854
SseBI	AGGCCT	1 cut(s)	1635
SsiI	CCGC	6 cut(s)	372, 466, 469, 594, 1236, 2214
SspDI	GGCGCC	1 cut(s)	602
StuI	AGGCCT	1 cut(s)	1635
StyD4I	CCNGG	6 cut(s)	358, 391, 766, 1544, 1660, 2262
StyI	CCWWGG	4 cut(s)	44, 606, 939, 2142
TaaI	ACNGT	7 cut(s)	638, 735, 747, 794, 1220, 1273, 1430
TaiI	ACGT	3 cut(s)	145, 1324, 1475
TaqI	TCGA	9 cut(s)	93, 169, 232, 329, 1716, 1878, 1938, 2032, 2257
TatI	WGTACW	5 cut(s)	542, 685, 760, 1283, 1430
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	3 cut(s)	628, 1011, 1880
Tru1I	TTAA	6 cut(s)	194, 279, 1146, 1380, 1638, 1802
Tru9I	TTAA	6 cut(s)	194, 279, 1146, 1380, 1638, 1802
TscAI	CASTG	3 cut(s)	726, 797, 1972
TseFI	GTSAC	4 cut(s)	362, 788, 1220, 1417
TseI	GCWGC	3 cut(s)	1304, 1355, 2036
Tsp45I	GTSAC	4 cut(s)	362, 788, 1220, 1417
TspGWI	ACGGA	2 cut(s)	403, 1129
TspRI	CASTG	3 cut(s)	726, 797, 1972
Van91I	CCANNNNNTGG	1 cut(s)	1262
Vha464I	CTTAAG	1 cut(s)	1145
VpaK11BI	GGWCC	4 cut(s)	374, 845, 916, 2014
VspI	ATTAAT	2 cut(s)	194, 279
XapI	RAATTY	1 cut(s)	979
XceI	RCATGY	2 cut(s)	1692, 1854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1263
XmiI	GTMKAC	1 cut(s)	1926
ZrmI	AGTACT	1 cut(s)	687
Zsp2I	ATGCAT	1 cut(s)	1645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.