Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003929.1

Orthogroup ID

OG0005243

Physical Location & Seq

Genomic Coordinates Reverse (-)

78466 .. 87022

Gene Structure 8557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003929.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atgggggcccttgatgcaatcttgccacacgagcattcaaaggagatccgccgctatctttataaccatcagaacaaagatggtggttggggactgcatatagaagggccaagtacaatgttttgtacagctctgtcctatgtgagtctgagattgctcggagaggagatggacggcggtgatggcgccatggagaaggcaagaaaatggattcttcaccgtggaggagttaccaccatcccatcatggggaaagatgtggctctcagtactcggtgtatatgaatgggacggtaacaatccactgcctcctgaactgtggcttttaccgtactttctcccagtacacccaggccgaatgtggtgtatctgtaggatggtatacctgcccatgtcatatttatacggcaagagatttgttggtcccatcaacaaccttattttatccctcagaagagagctttatacctttccctatcacctgattgattgggaccaagcaagaaatctatgcgccaagggcggatggcccttctccactccagacaatggttggcctgtctcagattgtacagctgaaggtttgaaggtacatacgtatgtggaatgcacatcatcagcagttgaaggccttaatgcattcatgaaattatatccagggcatcggaaaaaggaaatagaagcatgtattgcaaaggcagttcagttcatcgaaagcatacaacttcctgatggctcatggtatgggtcttggggagtttgctacacctatggaacatggtttggaataaaggggttaatggttggtggcaagacctatcagacaagtaatagcagtagaagagcatgtcatttcttgctatctaagcaactcgattcaggtggctggggagagagctttctttcatgccaaaacaaggtatacacaaatctcgaagggaacaaaccacatatagtaaacactggatgggctatgttggctctaattgaagcagggcagggtgaaagggacccgatccccttgcatcgagcagcaaaggtattgattaattcacagatggaaaatggagatttcccacaacaggtatttgttattgtaaatactgtacaaggtttgagaggcataacattacaaccttggacttactatgtttatttcaacagcaaatcatgggagtcttcaacaaaaattgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000250 GO:0003674 GO:0003824 GO:0016853 GO:0016866 GO:0031559

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

398

Amino Acids

45.01

Weight (kDa)

8.23

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45130 AT3G45130 AT3G45130 AT3G45130 AT3G45130
fragaria_vesca	FvH4_4g06000
malus_domestica	MD16G1237700.v1.1
prunus_persica	Prupe.1G063500_v2.0.a1 Prupe.1G063500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr0c45g0503831 RchiOBHm_Chr1g0332701 RchiOBHm_Chr4g0397241 RchiOBHm_Chr4g0397271 RchiOBHm_Chr4g0397301 RchiOBHm_Chr4g0397321
rosa_laevigata	RLG00000009434 RLG00000009437
rosa_multiflora	Rmu_sc0003239.1_g000001 Rmu_sc0003929.1_g000015 Rmu_sc0008546.1_g000001
rosa_roxburghii	Rroxscaffold_5G00342180 Rroxscaffold_5G00342240 Rroxscaffold_5G00342320
rosa_rugosa	Rorug03G0343000 Rorug03G0343900 Rorug03G0343900
rosa_wichuraiana	Rw4G006330 Rw4G006340 Rw4G006360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccI	GTMKAC	2 cut(s)	381, 921
AciI	CCGC	4 cut(s)	49, 52, 177, 522
AclWI	GGATC	2 cut(s)	40, 1009
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	8 cut(s)	115, 127, 270, 332, 345, 571, 591, 1107
AfiI	CCNNNNNNNGG	5 cut(s)	247, 248, 548, 916, 1081
AgsI	TTSAA	6 cut(s)	39, 586, 626, 989, 1159, 1182
AjnI	CCWGG	2 cut(s)	349, 655
AluBI	AGCT	4 cut(s)	131, 460, 575, 897
AluI	AGCT	4 cut(s)	131, 460, 575, 897
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	2 cut(s)	40, 1009
AoxI	GGCC	6 cut(s)	6, 107, 352, 527, 554, 628
ApaI	GGGCCC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	1031
AseI	ATTAAT	1 cut(s)	1047
AspLEI	GCGC	2 cut(s)	188, 515
AspS9I	GGNCC	7 cut(s)	6, 7, 107, 422, 493, 528, 1009
AsuHPI	GGTGA	4 cut(s)	191, 209, 470, 1013
AvaII	GGWCC	3 cut(s)	422, 493, 1009
BaeGI	GKGCMC	1 cut(s)	10
BaeI	ACNNNNGTAYC	2 cut(s)	581, 614
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	10
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	1170
BbvI	GCAGC	1 cut(s)	1043
BceAI	ACGGC	2 cut(s)	190, 421
BcgI	CGANNNNNNTGC	2 cut(s)	1003, 1037
BciT130I	CCWGG	2 cut(s)	351, 657
BcoDI	GTCTC	1 cut(s)	565
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	2 cut(s)	52, 1032
BlsI	GCNGC	2 cut(s)	53, 1033
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	351, 657
Bme18I	GGWCC	3 cut(s)	422, 493, 1009
BmgT120I	GGNCC	7 cut(s)	6, 7, 107, 422, 493, 528, 1009
BmiI	GGNNCC	7 cut(s)	7, 8, 187, 424, 494, 1010, 1011
BmrFI	CCNGG	2 cut(s)	351, 657
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	3 cut(s)	4, 670, 1033
BmuI	ACTGGG	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	1170
BpmI	CTGGAG	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	6 cut(s)	189, 220, 349, 516, 656, 1136
Bsc4I	CCNNNNNNNGG	5 cut(s)	247, 248, 548, 916, 1081
Bse1I	ACTGG	2 cut(s)	341, 967
BseBI	CCWGG	2 cut(s)	351, 657
BseDI	CCNNGG	6 cut(s)	189, 220, 349, 516, 656, 1136
BseGI	GGATG	4 cut(s)	237, 381, 530, 971
BseLI	CCNNNNNNNGG	5 cut(s)	247, 248, 548, 916, 1081
BseMII	CTCAG	4 cut(s)	140, 279, 463, 576
BseNI	ACTGG	2 cut(s)	341, 967
BseRI	GAGGAG	2 cut(s)	179, 240
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	1043
BseYI	CCCAGC	1 cut(s)	885
BshFI	GGCC	6 cut(s)	8, 109, 354, 529, 556, 630
BshNI	GGYRCC	1 cut(s)	185
BslFI	GGGAC	5 cut(s)	105, 302, 408, 506, 1022
BslI	CCNNNNNNNGG	5 cut(s)	247, 248, 548, 916, 1081
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	5 cut(s)	105, 302, 408, 506, 1022
BsmI	GAATGC	3 cut(s)	34, 611, 638
BsnI	GGCC	6 cut(s)	8, 109, 354, 529, 556, 630
Bsp120I	GGGCCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp1407I	TGTACA	3 cut(s)	125, 569, 1105
Bsp143I	GATC	2 cut(s)	45, 1014
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	4 cut(s)	49, 52, 177, 522
BspANI	GGCC	6 cut(s)	8, 109, 354, 529, 556, 630
BspCNI	CTCAG	4 cut(s)	141, 278, 462, 575
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	7 cut(s)	7, 8, 187, 424, 494, 1010, 1011
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	40, 1009
BspQI	GCTCTTC	1 cut(s)	835
BspT107I	GGYRCC	1 cut(s)	185
BsrGI	TGTACA	3 cut(s)	125, 569, 1105
BsrI	ACTGG	2 cut(s)	341, 967
BssECI	CCNNGG	6 cut(s)	189, 220, 349, 516, 656, 1136
BssMI	GATC	2 cut(s)	45, 1014
BssNAI	GTATAC	2 cut(s)	382, 922
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	29
BssT1I	CCWWGG	3 cut(s)	189, 516, 1136
Bst1107I	GTATAC	2 cut(s)	382, 922
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	351, 657
Bst4CI	ACNGT	5 cut(s)	221, 293, 318, 330, 1105
Bst6I	CTCTTC	2 cut(s)	448, 835
BstACI	GRCGYC	1 cut(s)	186
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstAUI	TGTACA	3 cut(s)	125, 569, 1105
BstBAI	YACGTR	1 cut(s)	597
BstDEI	CTNAG	5 cut(s)	149, 265, 449, 562, 864
BstDSI	CCRYGG	2 cut(s)	189, 220
BstF5I	GGATG	4 cut(s)	237, 381, 530, 971
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 515
BstKTI	GATC	2 cut(s)	48, 1017
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	2 cut(s)	45, 1014
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 31, 183, 519, 689, 865, 977
BstNI	CCWGG	2 cut(s)	351, 657
BstNSI	RCATGY	2 cut(s)	687, 849
BstSCI	CCNGG	2 cut(s)	349, 655
BstSFI	CTRYAG	1 cut(s)	370
BstSLI	GKGCMC	1 cut(s)	10
BstSNI	TACGTA	1 cut(s)	597
BstV1I	GCAGC	1 cut(s)	1043
BstV2I	GAAGAC	1 cut(s)	1170
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BstZ17I	GTATAC	2 cut(s)	382, 922
BsuRI	GGCC	6 cut(s)	8, 109, 354, 529, 556, 630
BtgI	CCRYGG	2 cut(s)	189, 220
BtsCI	GGATG	4 cut(s)	237, 381, 530, 971
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	302, 960
BveI	ACCTGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	2 cut(s)	188, 515
Cfr13I	GGNCC	7 cut(s)	6, 7, 107, 422, 493, 528, 1009
Csp6I	GTAC	8 cut(s)	114, 126, 269, 331, 344, 570, 590, 1106
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviQI	GTAC	8 cut(s)	114, 126, 269, 331, 344, 570, 590, 1106
DdeI	CTNAG	5 cut(s)	149, 265, 449, 562, 864
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	2 cut(s)	47, 1016
DpnII	GATC	2 cut(s)	45, 1014
Eam1104I	CTCTTC	2 cut(s)	448, 835
EarI	CTCTTC	2 cut(s)	448, 835
EciI	GGCGGA	2 cut(s)	38, 537
Eco105I	TACGTA	1 cut(s)	597
Eco130I	CCWWGG	3 cut(s)	189, 516, 1136
Eco147I	AGGCCT	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	3 cut(s)	422, 493, 1009
Eco57I	CTGAAG	1 cut(s)	597
EcoO109I	RGGNCCY	3 cut(s)	6, 7, 1009
EcoRII	CCWGG	2 cut(s)	349, 655
EcoT14I	CCWWGG	3 cut(s)	189, 516, 1136
EcoT22I	ATGCAT	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	10
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	3 cut(s)	189, 516, 1136
FaqI	GGGAC	5 cut(s)	105, 302, 408, 506, 1022
FblI	GTMKAC	2 cut(s)	381, 921
Fnu4HI	GCNGC	2 cut(s)	52, 1032
FokI	GGATG	4 cut(s)	224, 388, 537, 978
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	2 cut(s)	52, 1032
GlaI	GCGC	2 cut(s)	187, 514
GluI	GCNGC	2 cut(s)	52, 1032
GsaI	CCCAGC	1 cut(s)	889
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	6 cut(s)	8, 109, 354, 529, 556, 630
HhaI	GCGC	2 cut(s)	188, 515
Hin1I	GRCGYC	1 cut(s)	186
Hin6I	GCGC	2 cut(s)	186, 513
HinP1I	GCGC	2 cut(s)	186, 513
HinfI	GANTC	4 cut(s)	145, 211, 875, 1175
HphI	GGTGA	4 cut(s)	191, 209, 470, 1013
Hpy166II	GTNNAC	4 cut(s)	346, 382, 922, 958
Hpy188I	TCNGA	7 cut(s)	72, 150, 161, 452, 565, 666, 822
Hpy188III	TCNNGA	5 cut(s)	311, 542, 643, 728, 932
Hpy8I	GTNNAC	4 cut(s)	346, 382, 922, 958
HpyAV	CCTTC	7 cut(s)	98, 190, 541, 572, 580, 620, 929
HpyCH4III	ACNGT	5 cut(s)	221, 293, 318, 330, 1105
HpyCH4IV	ACGT	1 cut(s)	596
HpyCH4V	TGCA	7 cut(s)	17, 97, 609, 638, 692, 1024, 1193
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 31, 183, 519, 689, 865, 977
HpyF3I	CTNAG	5 cut(s)	149, 265, 449, 562, 864
HpySE526I	ACGT	1 cut(s)	596
Hsp92I	GRCGYC	1 cut(s)	186
HspAI	GCGC	2 cut(s)	186, 513
KasI	GGCGCC	1 cut(s)	185
KflI	GGGWCCC	1 cut(s)	1009
Kzo9I	GATC	2 cut(s)	45, 1014
LguI	GCTCTTC	1 cut(s)	835
Lsp1109I	GCAGC	1 cut(s)	1043
LweI	GCATC	3 cut(s)	4, 670, 1033
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	2 cut(s)	229, 293
MalI	GATC	2 cut(s)	47, 1016
MboI	GATC	2 cut(s)	45, 1014
MboII	GAAGA	4 cut(s)	206, 465, 852, 1170
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	647, 984, 1048, 1188
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	2 cut(s)	154, 1184
MnlI	CCTC	5 cut(s)	157, 218, 318, 458, 1112
Mph1103I	ATGCAT	1 cut(s)	640
MseI	TTAA	3 cut(s)	633, 797, 1047
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	351, 657
Mva1269I	GAATGC	3 cut(s)	34, 611, 638
MvaI	CCWGG	2 cut(s)	351, 657
MwoI	GCNNNNNNNGC	7 cut(s)	14, 31, 183, 519, 689, 865, 977
NarI	GGCGCC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	45, 1014
NlaIV	GGNNCC	7 cut(s)	7, 8, 187, 424, 494, 1010, 1011
NsiI	ATGCAT	1 cut(s)	640
NspI	RCATGY	2 cut(s)	687, 849
PagI	TCATGA	1 cut(s)	642
PceI	AGGCCT	1 cut(s)	630
PciSI	GCTCTTC	1 cut(s)	835
PctI	GAATGC	3 cut(s)	34, 611, 638
PfeI	GAWTC	2 cut(s)	211, 875
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	2 cut(s)	53, 1033
PleI	GAGTC	2 cut(s)	153, 1183
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	2 cut(s)	153, 1183
Ppu21I	YACGTR	1 cut(s)	597
PpuMI	RGGWCCY	1 cut(s)	1009
PshBI	ATTAAT	1 cut(s)	1047
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	1009
Psp6I	CCWGG	2 cut(s)	349, 655
PspFI	CCCAGC	1 cut(s)	885
PspGI	CCWGG	2 cut(s)	349, 655
PspN4I	GGNNCC	7 cut(s)	7, 8, 187, 424, 494, 1010, 1011
PspOMI	GGGCCC	1 cut(s)	6
PspPI	GGNCC	7 cut(s)	6, 7, 107, 422, 493, 528, 1009
PspPPI	RGGWCCY	1 cut(s)	1009
PsuI	RGATCY	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	8 cut(s)	115, 127, 270, 332, 345, 571, 591, 1107
RsaNI	GTAC	8 cut(s)	114, 126, 269, 331, 344, 570, 590, 1106
RseI	CAYNNNNRTG	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	835
SaqAI	TTAA	3 cut(s)	633, 797, 1047
SatI	GCNGC	2 cut(s)	52, 1032
Sau3AI	GATC	2 cut(s)	45, 1014
Sau96I	GGNCC	7 cut(s)	6, 7, 107, 422, 493, 528, 1009
ScaI	AGTACT	1 cut(s)	270
SchI	GAGTC	2 cut(s)	154, 1184
ScrFI	CCNGG	2 cut(s)	351, 657
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	3 cut(s)	4, 670, 1033
SfcI	CTRYAG	1 cut(s)	370
SfoI	GGCGCC	1 cut(s)	187
SinI	GGWCC	3 cut(s)	422, 493, 1009
SmiMI	CAYNNNNRTG	1 cut(s)	597
SnaBI	TACGTA	1 cut(s)	597
Sse9I	AATT	4 cut(s)	647, 984, 1048, 1188
SseBI	AGGCCT	1 cut(s)	630
SsiI	CCGC	4 cut(s)	49, 52, 177, 522
SspDI	GGCGCC	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	349, 655
StyI	CCWWGG	3 cut(s)	189, 516, 1136
TaaI	ACNGT	5 cut(s)	221, 293, 318, 330, 1105
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	4 cut(s)	711, 873, 933, 1027
TasI	AATT	4 cut(s)	647, 984, 1048, 1188
TatI	WGTACW	6 cut(s)	113, 125, 268, 343, 569, 1105
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	211, 875
Tru1I	TTAA	3 cut(s)	633, 797, 1047
Tru9I	TTAA	3 cut(s)	633, 797, 1047
TscAI	CASTG	2 cut(s)	309, 967
TseI	GCWGC	1 cut(s)	1031
TspDTI	ATGAA	5 cut(s)	297, 631, 659, 697, 894
TspRI	CASTG	2 cut(s)	309, 967
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	3 cut(s)	422, 493, 1009
VspI	ATTAAT	1 cut(s)	1047
XceI	RCATGY	2 cut(s)	687, 849
XcmI	CCANNNNNNNNNTGG	2 cut(s)	357, 549
XmiI	GTMKAC	2 cut(s)	381, 921
ZrmI	AGTACT	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.