Rroxscaffold_5G00342240

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
11043627 .. 11049045
5419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342240.1

Sequence Viewer

Length: 1461 bp
ATGGACGGTGGTGATGGCGCCATGGAGAAGGCAAGAAAATGGATTCTTCACCGTGGAGGAGTTACCACCATCCCGTCATGGGGAAAGATGTGGCTCTCAGACGTGCTGTGGGGGTGTCTTCATAAGGTTGGGGAACCACTTCTCATGAGATGGCCATTGTCTAACCTCAGGCAAAAAGCTCTCACCACTGTGATGGACCACATACACTATGAGGATGAAAACACTCAGTATATCTGCATTGGAGCTGTCAATAAGGTACTAAACATGATTTGTTGTTGGGTGGAGGATCAGAATTCAGAAGCGTACAAGCGTCATCTTTCAAGAATCAAAGATTATCTATGGGTTGCAGAAGATGGAATGAAAATGCAGGGATATAATGGATCTCAATGCTGGGACGTTGTTTTGGCTGTTCAAGCAATCCTTTCTACCAACCTTGTGAATGAATATGCTTCCTTGCTTAAGAAGGCGCACTATTTCATCAAAAATACACAAGTTAGGAGAGACAGCTATGGCAATCTGCGTTACTGGTACCGTCACATTTCTAAGGGCGGATGGCCCTTCTCCACTCCAGACAATGGTTGGCCTGCTTCAGATTGTACAGCTGAAGGTTTGAAGGCAGCACTCTTATTATCACGTATGCCCTGCGAAATTGTGGGAGAAGCAATAGCAGCTGATCAACTGCATGATGCTGTTAATGTAATATTATCCCTACAGAATAGCAATGGAGGGTTTGCATCATATGAACTCACAAGATCGTATGCCTGGTTGGAGATGATCAATCCAGCTGAAACATTTGGAGATGTCATGAATGATTATCAGTCTGTGGAATGCACATCATCAGCAGTAGAAGGCCTTAATGCATTCATGAAATTATATACAGGGCATCGGAAGAAAGATATAGAAGCATGTATTGCAAAGGCAGTTCAGTTCATCGAGAGCATACAACTTCCTGATGGCTCATGGTATGGGACTTGGGGAGTTTGCTACACCTATGGAACATGGTTTGGAATAAAGGGGTTAATGGCTGGTGGCAAGACCTATCAGACAAGTAATAGCATTAGAAGAGCATGTCATTTCTTGCTATCTAAGCAACTCGATTCAGGTGGCTGGGGAGAGAGCTTTCTCTCATGCCAAAACGAGGTATACACAAATCTCGAAGGGAACAAACCACACATAGTAAACACTGGATGGGCTATGTTGGCTCTAATTGAAGCAGGGCAGGGTGAAAGGGACCCGATCCCCTTGCATCGAGCAGCAAAGGTATTGATCAATTCACAGATGGAAAATGGAGATTTCCCACAACAGCAAATCATGGGAGTCTTCAACAAAAACTGCATGATTAGTTACTCCGCCTACAGAAATATCTTTCCCATCTGGGCACTTGGAGAGTATCGAAACCGGTGTATTAGTGGCTGTGCAAATTTGATCGTGTTTATCAAGACCATTTTCAGGAATAAGTAG
Functional Annotation

Protein Analysis

486

Amino Acids

54.86

Weight (kDa)

7.5

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 128 - 466 2.5e-53 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 17, 528
AccB7I CCANNNNNTGG 1 cut(s) 575
AccI GTMKAC 1 cut(s) 1143
AciI CCGC 2 cut(s) 549, 1350
AclWI GGATC 3 cut(s) 294, 388, 1231
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 2 cut(s) 292, 1420
AcuI CTGAAG 2 cut(s) 573, 624
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 4 cut(s) 258, 305, 530, 598
AfiI CCNNNNNNNGG 5 cut(s) 79, 80, 575, 1138, 1449
AflII CTTAAG 1 cut(s) 458
AgeI ACCGGT 1 cut(s) 1398
AgsI TTSAA 5 cut(s) 321, 413, 613, 1211, 1324
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 761
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 7 cut(s) 179, 245, 507, 602, 671, 785, 1119
AluI AGCT 7 cut(s) 179, 245, 507, 602, 671, 785, 1119
Alw26I GTCTC 1 cut(s) 495
AlwI GGATC 3 cut(s) 294, 388, 1231
AoxI GGCC 4 cut(s) 152, 554, 581, 850
ApeKI GCWGC 3 cut(s) 617, 668, 1253
ApoI RAATTY 2 cut(s) 292, 1420
AsiGI ACCGGT 1 cut(s) 1398
Asp700I GAANNNNTTC 1 cut(s) 138
Asp718I GGTACC 1 cut(s) 528
AspLEI GCGC 2 cut(s) 20, 469
AspS9I GGNCC 3 cut(s) 196, 555, 1231
AsuHPI GGTGA 4 cut(s) 23, 41, 175, 1235
AvaII GGWCC 2 cut(s) 196, 1231
AxyI CCTNAGG 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 1381
BalI TGGCCA 1 cut(s) 154
BanI GGYRCC 2 cut(s) 17, 528
BbsI GAAGAC 2 cut(s) 110, 1312
BbvI GCAGC 3 cut(s) 629, 680, 1265
BcgI CGANNNNNNTGC 2 cut(s) 1225, 1259
BciT130I CCWGG 1 cut(s) 763
BclI TGATCA 3 cut(s) 673, 774, 1266
BcoDI GTCTC 1 cut(s) 495
BfmI CTRYAG 2 cut(s) 710, 1354
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 3 cut(s) 618, 669, 1254
BlsI GCNGC 3 cut(s) 619, 670, 1255
Bme1390I CCNGG 1 cut(s) 763
Bme18I GGWCC 2 cut(s) 196, 1231
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 3 cut(s) 196, 555, 1231
BmiI GGNNCC 5 cut(s) 19, 135, 530, 1232, 1233
BmrFI CCNGG 1 cut(s) 763
BmsI GCATC 4 cut(s) 676, 743, 892, 1255
BpiI GAAGAC 2 cut(s) 110, 1312
BpmI CTGGAG 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 635
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 21, 52
BsaWI WCCGGW 1 cut(s) 1398
Bsc4I CCNNNNNNNGG 5 cut(s) 79, 80, 575, 1138, 1449
Bse118I RCCGGY 1 cut(s) 1398
Bse1I ACTGG 2 cut(s) 530, 1189
Bse21I CCTNAGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 727
BseBI CCWGG 1 cut(s) 763
BseDI CCNNGG 2 cut(s) 21, 52
BseGI GGATG 4 cut(s) 69, 220, 557, 1193
BseLI CCNNNNNNNGG 5 cut(s) 79, 80, 575, 1138, 1449
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 3 cut(s) 111, 181, 239
BseNI ACTGG 2 cut(s) 530, 1189
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 1381
BseXI GCAGC 3 cut(s) 629, 680, 1265
BseYI CCCAGC 2 cut(s) 390, 1107
BshFI GGCC 4 cut(s) 154, 556, 583, 852
BshNI GGYRCC 2 cut(s) 17, 528
BshTI ACCGGT 1 cut(s) 1398
BsiSI CCGG 1 cut(s) 1399
BslFI GGGAC 3 cut(s) 407, 982, 1244
BslI CCNNNNNNNGG 5 cut(s) 79, 80, 575, 1138, 1449
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 3 cut(s) 407, 982, 1244
BsmI GAATGC 2 cut(s) 833, 860
BsnI GGCC 4 cut(s) 154, 556, 583, 852
Bsp1286I GDGCHC 1 cut(s) 1381
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 549, 1350
BspANI GGCC 4 cut(s) 154, 556, 583, 852
BspCNI CTCAG 3 cut(s) 110, 180, 238
BspHI TCATGA 3 cut(s) 144, 804, 864
BspLI GGNNCC 5 cut(s) 19, 135, 530, 1232, 1233
BspPI GGATC 3 cut(s) 294, 388, 1231
BspQI GCTCTTC 1 cut(s) 1057
BspT107I GGYRCC 2 cut(s) 17, 528
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 727
BsrFI RCCGGY 1 cut(s) 1398
BsrGI TGTACA 1 cut(s) 596
BsrI ACTGG 2 cut(s) 530, 1189
BssAI RCCGGY 1 cut(s) 1398
BssECI CCNNGG 2 cut(s) 21, 52
BssMI GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
BssNAI GTATAC 1 cut(s) 1144
BssNI GRCGYC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 21
Bst1107I GTATAC 1 cut(s) 1144
Bst2UI CCWGG 1 cut(s) 763
Bst4CI ACNGT 4 cut(s) 8, 53, 190, 533
Bst6I CTCTTC 1 cut(s) 1057
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 911
BstAUI TGTACA 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 5 cut(s) 97, 167, 225, 543, 1086
BstDSI CCRYGG 2 cut(s) 21, 52
BstF5I GGATG 4 cut(s) 69, 220, 557, 1193
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 2 cut(s) 20, 469
BstKTI GATC 8 cut(s) 289, 383, 676, 755, 777, 1239, 1269, 1428
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
BstMWI GCNNNNNNNGC 5 cut(s) 413, 668, 911, 1087, 1199
BstNI CCWGG 1 cut(s) 763
BstNSI RCATGY 2 cut(s) 909, 1071
BstSCI CCNGG 1 cut(s) 761
BstSFI CTRYAG 2 cut(s) 710, 1354
BstSLI GKGCMC 1 cut(s) 1381
BstV1I GCAGC 3 cut(s) 629, 680, 1265
BstV2I GAAGAC 2 cut(s) 110, 1312
BstX2I RGATCY 1 cut(s) 380
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 1 cut(s) 380
BstZ17I GTATAC 1 cut(s) 1144
Bsu36I CCTNAGG 1 cut(s) 167
BsuRI GGCC 4 cut(s) 154, 556, 583, 852
BtgI CCRYGG 2 cut(s) 21, 52
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 4 cut(s) 69, 220, 557, 1193
BtsIMutI CAGTG 2 cut(s) 186, 1182
Cac8I GCNNGC 1 cut(s) 585
CciI TCATGA 3 cut(s) 144, 804, 864
CfoI GCGC 2 cut(s) 20, 469
Cfr10I RCCGGY 1 cut(s) 1398
Cfr13I GGNCC 3 cut(s) 196, 555, 1231
CseI GACGC 1 cut(s) 299
Csp6I GTAC 4 cut(s) 257, 304, 529, 597
CspAI ACCGGT 1 cut(s) 1398
CviQI GTAC 4 cut(s) 257, 304, 529, 597
DdeI CTNAG 5 cut(s) 97, 167, 225, 543, 1086
DinI GGCGCC 1 cut(s) 19
DpnI GATC 8 cut(s) 288, 382, 675, 754, 776, 1238, 1268, 1427
DpnII GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
EaeI YGGCCR 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 1057
EarI CTCTTC 1 cut(s) 1057
EciI GGCGGA 2 cut(s) 564, 1339
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 852
Eco47I GGWCC 2 cut(s) 196, 1231
Eco57I CTGAAG 2 cut(s) 573, 624
Eco81I CCTNAGG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 1231
EcoRI GAATTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 761
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 862
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 21
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 3 cut(s) 407, 982, 1244
FauNDI CATATG 1 cut(s) 739
FbaI TGATCA 3 cut(s) 673, 774, 1266
FblI GTMKAC 1 cut(s) 1143
Fnu4HI GCNGC 3 cut(s) 618, 669, 1254
FokI GGATG 4 cut(s) 56, 227, 564, 1200
Fsp4HI GCNGC 3 cut(s) 618, 669, 1254
GlaI GCGC 2 cut(s) 19, 468
GluI GCNGC 3 cut(s) 618, 669, 1254
GsaI CCCAGC 2 cut(s) 394, 1111
GsuI CTGGAG 1 cut(s) 552
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 154, 556, 583, 852
HapII CCGG 1 cut(s) 1399
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 20, 469
Hin1I GRCGYC 1 cut(s) 18
Hin6I GCGC 2 cut(s) 18, 467
HinP1I GCGC 2 cut(s) 18, 467
HinfI GANTC 4 cut(s) 43, 324, 1097, 1317
HpaII CCGG 1 cut(s) 1399
HphI GGTGA 4 cut(s) 23, 41, 175, 1235
Hpy166II GTNNAC 2 cut(s) 1144, 1180
Hpy188I TCNGA 6 cut(s) 100, 291, 298, 592, 888, 1044
Hpy8I GTNNAC 2 cut(s) 1144, 1180
HpyAV CCTTC 7 cut(s) 22, 457, 568, 599, 607, 842, 1151
HpyCH4III ACNGT 4 cut(s) 8, 53, 190, 533
HpyCH4IV ACGT 3 cut(s) 102, 396, 634
HpyF10VI GCNNNNNNNGC 5 cut(s) 413, 668, 911, 1087, 1199
HpyF3I CTNAG 5 cut(s) 97, 167, 225, 543, 1086
HpySE526I ACGT 3 cut(s) 102, 396, 634
Hsp92I GRCGYC 1 cut(s) 18
HspAI GCGC 2 cut(s) 18, 467
KasI GGCGCC 1 cut(s) 17
KflI GGGWCCC 1 cut(s) 1231
KpnI GGTACC 1 cut(s) 532
Ksp22I TGATCA 3 cut(s) 673, 774, 1266
Kzo9I GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
LguI GCTCTTC 1 cut(s) 1057
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 3 cut(s) 629, 680, 1265
LweI GCATC 4 cut(s) 676, 743, 892, 1255
MaeII ACGT 3 cut(s) 102, 396, 634
MaeIII GTNAC 4 cut(s) 61, 521, 533, 1343
MalI GATC 8 cut(s) 288, 382, 675, 754, 776, 1238, 1268, 1427
MboI GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
MboII GAAGA 6 cut(s) 38, 110, 362, 901, 1074, 1312
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 1381
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 6 cut(s) 292, 648, 869, 1206, 1270, 1420
MluNI TGGCCA 1 cut(s) 154
Mly113I GGCGCC 1 cut(s) 18
MlyI GAGTC 1 cut(s) 1326
MmeI TCCRAC 1 cut(s) 747
MnlI CCTC 6 cut(s) 50, 176, 205, 277, 719, 1132
Mox20I TGGCCA 1 cut(s) 154
Mph1103I ATGCAT 1 cut(s) 862
MroXI GAANNNNTTC 1 cut(s) 138
MscI TGGCCA 1 cut(s) 154
MseI TTAA 4 cut(s) 459, 693, 855, 1019
MslI CAYNNNNRTG 2 cut(s) 188, 191
Msp20I TGGCCA 1 cut(s) 154
MspA1I CMGCKG 3 cut(s) 602, 671, 785
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 1 cut(s) 1399
MspR9I CCNGG 1 cut(s) 763
Mva1269I GAATGC 2 cut(s) 833, 860
MvaI CCWGG 1 cut(s) 763
MwoI GCNNNNNNNGC 5 cut(s) 413, 668, 911, 1087, 1199
NarI GGCGCC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 739
NdeII GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
NlaIV GGNNCC 5 cut(s) 19, 135, 530, 1232, 1233
NmuCI GTSAC 1 cut(s) 533
NsiI ATGCAT 1 cut(s) 862
NspI RCATGY 2 cut(s) 909, 1071
OliI CACNNNNGTG 1 cut(s) 188
PagI TCATGA 3 cut(s) 144, 804, 864
PceI AGGCCT 1 cut(s) 852
PciSI GCTCTTC 1 cut(s) 1057
PctI GAATGC 2 cut(s) 833, 860
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 3 cut(s) 43, 324, 1097
PflMI CCANNNNNTGG 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 1398
PkrI GCNGC 3 cut(s) 619, 670, 1255
PleI GAGTC 1 cut(s) 1325
PluTI GGCGCC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 1325
Ppu21I YACGTR 1 cut(s) 635
PpuMI RGGWCCY 1 cut(s) 1231
Psp5II RGGWCCY 1 cut(s) 1231
Psp6I CCWGG 1 cut(s) 761
PspFI CCCAGC 2 cut(s) 390, 1107
PspGI CCWGG 1 cut(s) 761
PspN4I GGNNCC 5 cut(s) 19, 135, 530, 1232, 1233
PspPI GGNCC 3 cut(s) 196, 555, 1231
PspPPI RGGWCCY 1 cut(s) 1231
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 3 cut(s) 602, 671, 785
RsaI GTAC 4 cut(s) 258, 305, 530, 598
RsaNI GTAC 4 cut(s) 257, 304, 529, 597
RseI CAYNNNNRTG 2 cut(s) 188, 191
SapI GCTCTTC 1 cut(s) 1057
SaqAI TTAA 4 cut(s) 459, 693, 855, 1019
SatI GCNGC 3 cut(s) 618, 669, 1254
Sau3AI GATC 8 cut(s) 286, 380, 673, 752, 774, 1236, 1266, 1425
Sau96I GGNCC 3 cut(s) 196, 555, 1231
SchI GAGTC 1 cut(s) 1326
ScrFI CCNGG 1 cut(s) 763
SduI GDGCHC 1 cut(s) 1381
SfaNI GCATC 4 cut(s) 676, 743, 892, 1255
SfcI CTRYAG 2 cut(s) 710, 1354
SfoI GGCGCC 1 cut(s) 19
SinI GGWCC 2 cut(s) 196, 1231
SmiMI CAYNNNNRTG 2 cut(s) 188, 191
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 6 cut(s) 292, 648, 869, 1206, 1270, 1420
SseBI AGGCCT 1 cut(s) 852
SsiI CCGC 2 cut(s) 549, 1350
SspDI GGCGCC 1 cut(s) 17
SspI AATATT 1 cut(s) 702
StuI AGGCCT 1 cut(s) 852
StyD4I CCNGG 1 cut(s) 761
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 4 cut(s) 8, 53, 190, 533
TaiI ACGT 3 cut(s) 105, 399, 637
TaqI TCGA 5 cut(s) 933, 1095, 1155, 1249, 1393
TasI AATT 6 cut(s) 292, 648, 869, 1206, 1270, 1420
TatI WGTACW 1 cut(s) 596
TfiI GAWTC 3 cut(s) 43, 324, 1097
Tru1I TTAA 4 cut(s) 459, 693, 855, 1019
Tru9I TTAA 4 cut(s) 459, 693, 855, 1019
TscAI CASTG 2 cut(s) 193, 1189
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 3 cut(s) 617, 668, 1253
Tsp45I GTSAC 1 cut(s) 533
TspRI CASTG 2 cut(s) 193, 1189
Van91I CCANNNNNTGG 1 cut(s) 575
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 196, 1231
XapI RAATTY 2 cut(s) 292, 1420
XceI RCATGY 2 cut(s) 909, 1071
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XmiI GTMKAC 1 cut(s) 1143
XmnI GAANNNNTTC 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.