Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002316

Physical Location & Seq

Genomic Coordinates Forward (+)

25071123 .. 25074685

Gene Structure 3563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTGGTAAATGGACTCGTTCCGATTCAACGCCACTCCTTCCGCCCACAACACCATCCATCACAACGCTCCTCCCCCTCAAACGCTTATTCCTCATACTCCTCTATCTTTCTCGAAATGACCTCCGCCGTCGCGCAGGTGTGTTTGATGAGAATGGGAAGCTTCTAGGTTCGTCTAGCAGTCCGATTCAGGTTTGGAAGGACGGTGATTGCGTTGAGGGTCTGGGATTTGCGGCTACTTGTTCACTAGTTGCAGTGGATGCTGATGGCTCTCCTATTACGGTTTCCTGGAGTGGTGATTCAAGAAGAAGCATAATAGTATGGATGGACCATAGAGCTGTAGAACAAGCTGAAAGGATCAATTCACGCAACTCACCCGTCCTGCAGTACTGTGGTGGAGCTCTTTCCCCTGAGATGCAGCCTCCAAAGCTTTTATGGGTGAAAGAAAATCTGCCAGAATCTTGGTCAATGGTCTTCAGGTGGATGGACTTGAGTGATTGGTTATCATACAGGGCCACAGGAGATGATACACGTAGTCTCTGTACAACAGTTTGCAAATGGACATATCTTGGTCATCCACATATGCAGCAAAACAATGAGAAAGATTCTCGAGACATGGAAGCTTGTGGATGGGGTGATGATTTCTGGGAGGAGATTGGATTAGGTGATCTTGTAGAAGGGCATCATGCTAAGATAGGACGAATTGTAGCTTTCCCTGGCCATCCTCTGGGTTCCGGTCTCACATCTACTGCTGCGAAAGCAAGATATTCTGAACTAGGTCTTGTAGCAGGGATTCCTGTTGGGACTTCGCCAATTGATGCTCAAGCCGGTGGTGTGGGGGTATTGGAAAGTGTGCCTTCATCAGATTCTCAGCCTAAAGAGTCTGATATTGAAGCTCTATGCCATCGTATGATGTTAGTCTGTGGAACTTCTACTTGCCATCTGATTGTATCACAGAAGAAGCTTTTCATTCCAGGTGTCTGGGGTCTGTATTGGTCAGCTGTGGTACCTGAACAATGGCTCACAGAAGGTGGTCAGAGTGCTACGGGTGCATTATTGGATTACATAATTGAAAACCATGTTGCTTCTCCTCACCTTGCCAATCATGCTGCTTCTCAACGTGAGATCCATTGCTCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

380

Amino Acids

41.54

Weight (kDa)

5.64

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FGGY_N	PF00370	103 - 175	1.4e-06	FGGY family of carbohydrate kinases, N-terminal domain
FGGY_C	PF02782	304 - 368	6.7e-13	FGGY family of carbohydrate kinases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30310 AT4G30310 AT4G30310 AT4G30310
fragaria_vesca	FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080
malus_domestica	MD13G1267100.v1.1
prunus_persica	Prupe.1G089400_v2.0.a1 Prupe.1G089400_v2.0.a1
pyrus_communis	pycom13g22860
rosa_chinensis	RchiOBHm_Chr4g0403081 RchiOBHm_Chr4g0405011 RchiOBHm_Chr4g0405021
rosa_laevigata	RLG00000009027
rosa_multiflora	Rmu_co8073462.1_g000001 Rmu_co8189736.1_g000001 Rmu_sc0000225.1_g000012 Rmu_sc0001023.1_g000030 Rmu_ssc0000127.1_g000034
rosa_roxburghii	Rroxscaffold_5G00347760
rosa_rugosa	Rorug04G0040500 Rorug04G0052000 Rorug04G0052100
rosa_samantha	Rh4AG117900 Rh4AG127000 Rh4AG127200 Rh4BG110300 Rh4BG121100 Rh4CG124700 Rh4CG135100 Rh4CG135200 Rh4DG109800 Rh4DG110300 Rh4DG121400
rosa_wichuraiana	Rw4G009430 Rw4G009520 Rw4G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	128
Acc65I	GGTACC	1 cut(s)	1006
AccB1I	GGYRCC	1 cut(s)	1006
AccB7I	CCANNNNNTGG	1 cut(s)	727
AccII	CGCG	1 cut(s)	135
AciI	CCGC	3 cut(s)	44, 127, 233
AclWI	GGATC	2 cut(s)	365, 1120
AcoI	YGGCCR	1 cut(s)	718
AcuI	CTGAAG	1 cut(s)	460
AfaI	GTAC	3 cut(s)	389, 544, 1008
AfiI	CCNNNNNNNGG	1 cut(s)	727
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	30, 303, 893, 1073
AhlI	ACTAGT	1 cut(s)	247
AjnI	CCWGG	3 cut(s)	287, 715, 973
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	3 cut(s)	542, 606, 743
AlwI	GGATC	2 cut(s)	365, 1120
Ama87I	CYCGRG	1 cut(s)	609
AoxI	GGCC	2 cut(s)	513, 718
ApeKI	GCWGC	4 cut(s)	418, 586, 752, 1109
Asp700I	GAANNNNTTC	1 cut(s)	965
Asp718I	GGTACC	1 cut(s)	1006
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	328, 513
AsuHPI	GGTGA	7 cut(s)	218, 308, 366, 451, 647, 677, 1085
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	720
BanI	GGYRCC	1 cut(s)	1006
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	4 cut(s)	430, 598, 739, 1096
BccI	CCATC	9 cut(s)	64, 68, 260, 319, 478, 624, 729, 912, 948
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	3 cut(s)	289, 717, 975
BcoDI	GTCTC	3 cut(s)	542, 606, 743
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	5 cut(s)	167, 177, 248, 776, 1141
BfmI	CTRYAG	2 cut(s)	339, 383
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	5 cut(s)	234, 419, 587, 753, 1110
BlsI	GCNGC	5 cut(s)	235, 420, 588, 754, 1111
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	3 cut(s)	289, 717, 975
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	328, 513
BmiI	GGNNCC	2 cut(s)	733, 1008
BmrFI	CCNGG	3 cut(s)	289, 717, 975
BmsI	GCATC	4 cut(s)	250, 405, 691, 808
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	310
BpuEI	CTTGAG	2 cut(s)	511, 807
BsaAI	YACGTR	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	715
BsaWI	WCCGGW	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	1 cut(s)	727
Bse118I	RCCGGY	1 cut(s)	827
Bse3DI	GCAATG	1 cut(s)	1129
BseBI	CCWGG	3 cut(s)	289, 717, 975
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	7 cut(s)	56, 265, 330, 489, 574, 635, 721
BseLI	CCNNNNNNNGG	1 cut(s)	727
BseMI	GCAATG	1 cut(s)	1129
BseMII	CTCAG	2 cut(s)	402, 884
BseRI	GAGGAG	4 cut(s)	62, 92, 665, 1080
BseXI	GCAGC	4 cut(s)	430, 598, 739, 1096
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	515, 720
BshNI	GGYRCC	1 cut(s)	1006
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	2 cut(s)	735, 828
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	1 cut(s)	727
BsmAI	GTCTC	3 cut(s)	542, 606, 743
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	515, 720
Bso31I	GGTCTC	1 cut(s)	743
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	542
Bsp143I	GATC	3 cut(s)	357, 667, 1125
BspACI	CCGC	3 cut(s)	44, 127, 233
BspANI	GGCC	2 cut(s)	515, 720
BspCNI	CTCAG	2 cut(s)	403, 883
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	733, 1008
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	365, 1120
BspT107I	GGYRCC	1 cut(s)	1006
BspTNI	GGTCTC	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	1129
BsrFI	RCCGGY	1 cut(s)	827
BsrGI	TGTACA	1 cut(s)	542
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	1 cut(s)	715
BssMI	GATC	3 cut(s)	357, 667, 1125
Bst2UI	CCWGG	3 cut(s)	289, 717, 975
Bst4CI	ACNGT	4 cut(s)	206, 283, 392, 550
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	411, 690, 870
BstF5I	GGATG	7 cut(s)	56, 265, 330, 489, 574, 635, 721
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	3 cut(s)	360, 670, 1128
BstMAI	GTCTC	3 cut(s)	542, 606, 743
BstMBI	GATC	3 cut(s)	357, 667, 1125
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 427, 758, 1049, 1106
BstNI	CCWGG	3 cut(s)	289, 717, 975
BstSCI	CCNGG	3 cut(s)	287, 715, 973
BstSFI	CTRYAG	2 cut(s)	339, 383
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	430, 598, 739, 1096
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	1125
BstXI	CCANNNNNNTGG	2 cut(s)	462, 981
BstYI	RGATCY	1 cut(s)	1125
BsuRI	GGCC	2 cut(s)	515, 720
BtsCI	GGATG	7 cut(s)	56, 265, 330, 489, 574, 635, 721
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	2 cut(s)	328, 513
Csp6I	GTAC	3 cut(s)	388, 543, 1007
CviAII	CATG	4 cut(s)	616, 686, 1079, 1106
CviQI	GTAC	3 cut(s)	388, 543, 1007
DdeI	CTNAG	3 cut(s)	411, 690, 870
DpnI	GATC	3 cut(s)	359, 669, 1127
DpnII	GATC	3 cut(s)	357, 667, 1125
EaeI	YGGCCR	1 cut(s)	718
EciI	GGCGGA	2 cut(s)	33, 116
Ecl136II	GAGCTC	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	328
Eco53kI	GAGCTC	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	460
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	401
EcoRII	CCWGG	3 cut(s)	287, 715, 973
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	4 cut(s)	619, 689, 1082, 1109
FalI	AAGNNNNNCTT	2 cut(s)	841, 873
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	4 cut(s)	615, 685, 1078, 1105
FauNDI	CATATG	1 cut(s)	582
Fnu4HI	GCNGC	5 cut(s)	234, 419, 587, 753, 1110
FokI	GGATG	7 cut(s)	43, 272, 337, 496, 561, 642, 708
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	5 cut(s)	234, 419, 587, 753, 1110
FspBI	CTAG	5 cut(s)	167, 177, 248, 776, 1141
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	5 cut(s)	234, 419, 587, 753, 1110
GsuI	CTGGAG	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	515, 720
HapII	CCGG	2 cut(s)	735, 828
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	619, 689, 1082, 1109
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HindIII	AAGCTT	4 cut(s)	161, 428, 621, 962
HinfI	GANTC	9 cut(s)	16, 26, 187, 299, 458, 605, 793, 866, 881
HpaII	CCGG	2 cut(s)	735, 828
HphI	GGTGA	7 cut(s)	218, 308, 366, 451, 647, 677, 1085
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	7 cut(s)	25, 186, 772, 865, 886, 945, 1038
Hpy188III	TCNNGA	4 cut(s)	114, 303, 609, 611
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	5 cut(s)	50, 193, 671, 867, 1022
HpyCH4III	ACNGT	4 cut(s)	206, 283, 392, 550
HpyCH4IV	ACGT	2 cut(s)	532, 1120
HpyCH4V	TGCA	6 cut(s)	254, 385, 418, 555, 586, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 427, 758, 1049, 1106
HpyF3I	CTNAG	3 cut(s)	411, 690, 870
HpySE526I	ACGT	2 cut(s)	532, 1120
Hsp92II	CATG	4 cut(s)	619, 689, 1082, 1109
HspAI	GCGC	1 cut(s)	135
KpnI	GGTACC	1 cut(s)	1010
Kzo9I	GATC	3 cut(s)	357, 667, 1125
LmnI	GCTCC	2 cut(s)	75, 398
Lsp1109I	GCAGC	4 cut(s)	430, 598, 739, 1096
LweI	GCATC	4 cut(s)	250, 405, 691, 808
MaeI	CTAG	5 cut(s)	167, 177, 248, 776, 1141
MaeII	ACGT	2 cut(s)	532, 1120
MalI	GATC	3 cut(s)	359, 669, 1127
MboI	GATC	3 cut(s)	357, 667, 1125
MboII	GAAGA	3 cut(s)	318, 466, 970
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	1 cut(s)	1125
MhlI	GDGCHC	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	4 cut(s)	361, 702, 813, 1068
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	2 cut(s)	10, 890
Mox20I	TGGCCA	1 cut(s)	720
MroXI	GAANNNNTTC	1 cut(s)	965
MscI	TGGCCA	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	2 cut(s)	735, 828
MspR9I	CCNGG	3 cut(s)	289, 717, 975
MunI	CAATTG	1 cut(s)	813
MvaI	CCWGG	3 cut(s)	289, 717, 975
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	5 cut(s)	260, 427, 758, 1049, 1106
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	3 cut(s)	357, 667, 1125
NlaIII	CATG	4 cut(s)	619, 689, 1082, 1109
NlaIV	GGNNCC	2 cut(s)	733, 1008
PaeR7I	CTCGAG	1 cut(s)	609
PaqCI	CACCTGC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	7 cut(s)	26, 187, 299, 458, 605, 793, 866
PflMI	CCANNNNNTGG	1 cut(s)	727
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	235, 420, 588, 754, 1111
PleI	GAGTC	2 cut(s)	10, 889
PpsI	GAGTC	2 cut(s)	10, 889
Ppu21I	YACGTR	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	3 cut(s)	287, 715, 973
PspGI	CCWGG	3 cut(s)	287, 715, 973
PspN4I	GGNNCC	2 cut(s)	733, 1008
PspPI	GGNCC	2 cut(s)	328, 513
PstI	CTGCAG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	1125
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	3 cut(s)	389, 544, 1008
RsaNI	GTAC	3 cut(s)	388, 543, 1007
SacI	GAGCTC	1 cut(s)	403
SatI	GCNGC	5 cut(s)	234, 419, 587, 753, 1110
Sau3AI	GATC	3 cut(s)	357, 667, 1125
Sau96I	GGNCC	2 cut(s)	328, 513
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	2 cut(s)	10, 890
ScrFI	CCNGG	3 cut(s)	289, 717, 975
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	4 cut(s)	250, 405, 691, 808
SfcI	CTRYAG	2 cut(s)	339, 383
Sfr274I	CTCGAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	609
SmlI	CTYRAG	3 cut(s)	490, 609, 822
SmoI	CTYRAG	3 cut(s)	490, 609, 822
SpeI	ACTAGT	1 cut(s)	247
Sse9I	AATT	4 cut(s)	361, 702, 813, 1068
SsiI	CCGC	3 cut(s)	44, 127, 233
SspMI	CTAG	5 cut(s)	167, 177, 248, 776, 1141
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	3 cut(s)	287, 715, 973
TaaI	ACNGT	4 cut(s)	206, 283, 392, 550
TaiI	ACGT	2 cut(s)	535, 1123
TaqI	TCGA	2 cut(s)	115, 610
TasI	AATT	4 cut(s)	361, 702, 813, 1068
TatI	WGTACW	2 cut(s)	387, 542
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	7 cut(s)	26, 187, 299, 458, 605, 793, 866
TscAI	CASTG	1 cut(s)	261
TseI	GCWGC	4 cut(s)	418, 586, 752, 1109
TspDTI	ATGAA	2 cut(s)	849, 958
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	965
XspI	CTAG	5 cut(s)	167, 177, 248, 776, 1141
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.