Rh4AG127200

FGGY carbohydrate kinase domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002316
Physical Location & Seq
Forward (+)
27552551 .. 27555533
2983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG127200.1

Sequence Viewer

Length: 519 bp
ATGTTCTTCCTGATTTTCATGGGAACAGACGATTTACGTCACCAATTGCACATCCAAAAGCAAAAGGATTTATCTGTGGTTTTAACACTTGATACAAGTGAGAAGCAATTGGCACTTCAATACCTCGCCACACTGCAAGGTATTGCATATGGCACTCGCCATATTGTAGAGCACTGCAATGCCCAGGGTCACAAAATTGACACTATACTAGCATGTGGAGGCCTTGTTAAGAACCCACTATTCATACAAGAACATGCAGATATAATTGGTTGCCCTATTATTCTTCCATGGGAGAGTGAGCCTGTGCTATTGGGTGCTGCCATTCTTGGTGCTGTAGCTGCAAGGAAATATTTTAGCATGCATGATGCCATGAAGGCCCTGAATGCTTCAGGGCAGGTCATCCATTCATCCAAAGACCCTAAGGTGAAGAAGTACCATGATGCCAAGTACCGCATTTTTTGTGACCTTTATGACCAGCAGCTATCTCATTGTTCGCTGATGGCTGCAGCCTTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FGGY_C FGGY_N

Protein Analysis

172

Amino Acids

19.13

Weight (kDa)

7.14

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_C PF02782 32 - 114 4.8e-25 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AciI CCGC 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 2 cut(s) 434, 449
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 2 cut(s) 338, 481
AluI AGCT 2 cut(s) 338, 481
Alw21I GWGCWC 1 cut(s) 174
AoxI GGCC 2 cut(s) 220, 375
ApeKI GCWGC 5 cut(s) 317, 338, 478, 503, 506
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 32, 436
AxyI CCTNAGG 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 304, 325, 490, 490
BccI CCATC 1 cut(s) 493
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 2 cut(s) 333, 504
BfuAI ACCTGC 1 cut(s) 385
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 5 cut(s) 318, 339, 479, 504, 507
BlsI GCNGC 5 cut(s) 319, 340, 480, 505, 508
Bme1390I CCNGG 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 2 cut(s) 355, 430
BsaJI CCNNGG 3 cut(s) 183, 184, 287
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bse21I CCTNAGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 3 cut(s) 183, 184, 287
BseGI GGATG 3 cut(s) 51, 399, 407
BseMI GCAATG 1 cut(s) 184
BseXI GCAGC 4 cut(s) 304, 325, 490, 490
BshFI GGCC 2 cut(s) 222, 377
BsiHKAI GWGCWC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 2 cut(s) 222, 377
Bsp1286I GDGCHC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 1 cut(s) 451
BspANI GGCC 2 cut(s) 222, 377
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 183, 184, 287
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 51, 399, 407
BstMWI GCNNNNNNNGC 3 cut(s) 338, 374, 383
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 3 cut(s) 216, 257, 361
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 2 cut(s) 333, 504
BstV1I GCAGC 4 cut(s) 304, 325, 490, 490
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 2 cut(s) 222, 377
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 3 cut(s) 51, 399, 407
BtsI GCAGTG 2 cut(s) 131, 172
BtsIMutI CAGTG 2 cut(s) 131, 172
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 376
Csp6I GTAC 2 cut(s) 433, 448
CviAII CATG 8 cut(s) 19, 213, 254, 288, 358, 362, 370, 437
CviJI RGCY 7 cut(s) 222, 301, 338, 377, 481, 503, 509
CviKI_1 RGCY 7 cut(s) 222, 301, 338, 377, 481, 503, 509
CviQI GTAC 2 cut(s) 433, 448
DdeI CTNAG 1 cut(s) 420
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 372
Eco81I CCTNAGG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 8 cut(s) 22, 216, 257, 291, 361, 365, 373, 440
FatI CATG 8 cut(s) 18, 212, 253, 287, 357, 361, 369, 436
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 5 cut(s) 318, 339, 479, 504, 507
FokI GGATG 3 cut(s) 38, 386, 394
Fsp4HI GCNGC 5 cut(s) 318, 339, 479, 504, 507
FspBI CTAG 1 cut(s) 209
GluI GCNGC 5 cut(s) 318, 339, 479, 504, 507
HaeIII GGCC 2 cut(s) 222, 377
Hin1II CATG 8 cut(s) 22, 216, 257, 291, 361, 365, 373, 440
HphI GGTGA 2 cut(s) 32, 436
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 8 cut(s) 49, 136, 146, 177, 257, 341, 361, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 374, 383
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 8 cut(s) 22, 216, 257, 291, 361, 365, 373, 440
LpnPI CCDG 8 cut(s) 23, 170, 197, 315, 375, 380, 392, 488
Lsp1109I GCAGC 4 cut(s) 304, 325, 490, 490
LweI GCATC 2 cut(s) 355, 430
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 3 cut(s) 38, 188, 461
MboII GAAGA 2 cut(s) 275, 439
MfeI CAATTG 2 cut(s) 44, 107
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 4 cut(s) 44, 107, 195, 264
MnlI CCTC 2 cut(s) 134, 212
Mph1103I ATGCAT 1 cut(s) 363
MseI TTAA 2 cut(s) 83, 228
MslI CAYNNNNRTG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 2 cut(s) 44, 107
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 338, 374, 383
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 148
NlaIII CATG 8 cut(s) 22, 216, 257, 291, 361, 365, 373, 440
NmuCI GTSAC 3 cut(s) 38, 188, 461
NsiI ATGCAT 1 cut(s) 363
NspI RCATGY 3 cut(s) 216, 257, 361
PaeI GCATGC 1 cut(s) 361
PasI CCCWGGG 1 cut(s) 184
PceI AGGCCT 1 cut(s) 222
PctI GAATGC 1 cut(s) 388
PkrI GCNGC 5 cut(s) 319, 340, 480, 505, 508
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspPI GGNCC 1 cut(s) 376
PstI CTGCAG 1 cut(s) 508
RsaI GTAC 2 cut(s) 434, 449
RsaNI GTAC 2 cut(s) 433, 448
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 2 cut(s) 83, 228
SatI GCNGC 5 cut(s) 318, 339, 479, 504, 507
Sau96I GGNCC 1 cut(s) 376
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 174
SetI ASST 8 cut(s) 40, 126, 142, 340, 399, 426, 468, 483
SfaNI GCATC 2 cut(s) 355, 430
SfcI CTRYAG 2 cut(s) 333, 504
SmiMI CAYNNNNRTG 1 cut(s) 177
SphI GCATGC 1 cut(s) 361
Sse9I AATT 4 cut(s) 44, 107, 195, 264
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 1 cut(s) 451
SspI AATATT 1 cut(s) 350
SspMI CTAG 1 cut(s) 209
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 287
TaiI ACGT 1 cut(s) 40
TasI AATT 4 cut(s) 44, 107, 195, 264
Tru1I TTAA 2 cut(s) 83, 228
Tru9I TTAA 2 cut(s) 83, 228
TscAI CASTG 2 cut(s) 138, 179
TseFI GTSAC 3 cut(s) 38, 188, 461
TseI GCWGC 5 cut(s) 317, 338, 478, 503, 506
Tsp45I GTSAC 3 cut(s) 38, 188, 461
TspDTI ATGAA 4 cut(s) 7, 232, 386, 396
TspRI CASTG 2 cut(s) 138, 179
XceI RCATGY 3 cut(s) 216, 257, 361
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.