Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002316

Physical Location & Seq

Genomic Coordinates Reverse (-)

6278752 .. 6280422

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0040500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTACGGCCTCTGGCTCTCCCAACGCCGCCACCACTACTCGGAAAACTATGACGACGGCCACCGTGCCCAGCCCTATAATCTGTCCCGCAAAAGGCCCAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATCGAGCCCTTCAAAGGTTTGGCCTCGATCCCAAAGCTCGCGTCTGTCACGTCTCGTGAAATTAGGAGCCAAAGCCAAGCGCCAATCAGCCGCCGCTTCCTCCTCCGCGTCAATTCGCTTTTCTTCTTCTTCTTCTTCTTCTCCATTACGCTTCTCCCCTCTGACGACGTCGTTTACTGCTTCGTGCTTGATCGACCAGCTCAGGGCCGTTTTCCCGGACATGGATAATCAGACAAAGTTTATCGAAGGGGCCAAAGAACGTAAAGAACTCTACAACAAGGTGTTAGAGTTGAAAGGAAACATAAGGGTCTTTTGCAGGTGTAGGCCTCTAAACACTGAGGAAGTTTCAGCAGGAGCTTCAATGGCTATTGACTTTGAATCTAAGAAAGAAGGTGAGCTTGCTGTCAAGTCAAATGGGGTTACAAGAAGGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCAGACCAAGCTGATGTCTTCGAAGACACAGCTCCATTTGCAACCTCAGTTCTAGATGGGTACAATGTCTGCATATTTGCTTATGGGCAGACTGAAAGTGGAAAAACCTTTACAATGGAGGGAACGGAAGAAGCTCGGGGAGTCAATTTTAGGACTCTTGAGCAACTGTTTCTTATACTAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

259

Amino Acids

28.83

Weight (kDa)

9.53

Isoelectric Point (pI)

68.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	128 - 256	5.5e-36	Microtubule binding
Kinesin	PF00225	150 - 257	2.2e-31	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30310 AT4G30310 AT4G30310 AT4G30310
fragaria_vesca	FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080
malus_domestica	MD13G1267100.v1.1
prunus_persica	Prupe.1G089400_v2.0.a1 Prupe.1G089400_v2.0.a1
pyrus_communis	pycom13g22860
rosa_chinensis	RchiOBHm_Chr4g0403081 RchiOBHm_Chr4g0405011 RchiOBHm_Chr4g0405021
rosa_laevigata	RLG00000009027
rosa_multiflora	Rmu_co8073462.1_g000001 Rmu_co8189736.1_g000001 Rmu_sc0000225.1_g000012 Rmu_sc0001023.1_g000030 Rmu_ssc0000127.1_g000034
rosa_roxburghii	Rroxscaffold_5G00347760
rosa_rugosa	Rorug04G0040500 Rorug04G0052000 Rorug04G0052100
rosa_samantha	Rh4AG117900 Rh4AG127000 Rh4AG127200 Rh4BG110300 Rh4BG121100 Rh4CG124700 Rh4CG135100 Rh4CG135200 Rh4DG109800 Rh4DG110300 Rh4DG121400
rosa_wichuraiana	Rw4G009430 Rw4G009520 Rw4G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	438
AatII	GACGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	438
AccII	CGCG	2 cut(s)	172, 239
AciI	CCGC	5 cut(s)	28, 88, 222, 225, 237
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	2 cut(s)	5, 656
AfiI	CCNNNNNNNGG	6 cut(s)	40, 93, 112, 145, 334, 352
AgsI	TTSAA	4 cut(s)	144, 424, 492, 509
AjiI	CACGTC	1 cut(s)	182
AluBI	AGCT	7 cut(s)	168, 331, 488, 529, 605, 626, 728
AluI	AGCT	7 cut(s)	168, 331, 488, 529, 605, 626, 728
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	8 cut(s)	7, 58, 95, 152, 336, 381, 455, 586
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	96, 336, 381, 561, 587
AsuC2I	CCSGG	2 cut(s)	113, 347
AsuHPI	GGTGA	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	615
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	1 cut(s)	561
BaeGI	GKGCMC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	604, 624
BbvCI	CCTCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	644
BceAI	ACGGC	3 cut(s)	22, 73, 323
BcnI	CCSGG	2 cut(s)	113, 347
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	647
BfoI	RGCGCY	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	3 cut(s)	28, 222, 225
BlsI	GCNGC	3 cut(s)	29, 223, 226
Bme1390I	CCNGG	2 cut(s)	113, 347
Bme18I	GGWCC	1 cut(s)	561
BmeT110I	CYCGRG	1 cut(s)	729
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	5 cut(s)	96, 336, 381, 561, 587
BmiI	GGNNCC	2 cut(s)	199, 382
BmrFI	CCNGG	2 cut(s)	113, 347
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	2 cut(s)	604, 624
Bpu10I	CCTNAGC	2 cut(s)	107, 332
Bpu14I	TTCGAA	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	576, 773
BpuMI	CCSGG	2 cut(s)	113, 347
BsaHI	GRCGYC	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 93, 112, 145, 334, 352
BseLI	CCNNNNNNNGG	6 cut(s)	40, 93, 112, 145, 334, 352
BseMII	CTCAG	4 cut(s)	121, 346, 459, 654
BseRI	GAGGAG	1 cut(s)	223
BseSI	GKGCMC	1 cut(s)	70
BseYI	CCCAGC	2 cut(s)	69, 98
Bsh1236I	CGCG	2 cut(s)	172, 239
BshFI	GGCC	8 cut(s)	9, 60, 97, 154, 338, 383, 457, 588
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	2 cut(s)	113, 347
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	6 cut(s)	40, 93, 112, 145, 334, 352
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	8 cut(s)	9, 60, 97, 154, 338, 383, 457, 588
BsoBI	CYCGRG	1 cut(s)	729
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	70, 140
Bsp143I	GATC	2 cut(s)	158, 321
BspACI	CCGC	5 cut(s)	28, 88, 222, 225, 237
BspANI	GGCC	8 cut(s)	9, 60, 97, 154, 338, 383, 457, 588
BspCNI	CTCAG	4 cut(s)	120, 345, 460, 653
BspFNI	CGCG	2 cut(s)	172, 239
BspLI	GGNNCC	2 cut(s)	199, 382
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	153
BspT104I	TTCGAA	1 cut(s)	615
BssMI	GATC	2 cut(s)	158, 321
BssNI	GRCGYC	1 cut(s)	299
BssSI	CACGAG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	65, 762
BstACI	GRCGYC	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	170, 531
BstDEI	CTNAG	5 cut(s)	107, 332, 468, 513, 640
BstFNI	CGCG	2 cut(s)	172, 239
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	161, 324
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	158, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 494, 602, 632
BstSCI	CCNGG	2 cut(s)	111, 345
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	2 cut(s)	172, 239
BstV2I	GAAGAC	2 cut(s)	604, 624
BsuRI	GGCC	8 cut(s)	9, 60, 97, 154, 338, 383, 457, 588
BtrI	CACGTC	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	170, 531
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	5 cut(s)	96, 336, 381, 561, 587
CseI	GACGC	2 cut(s)	161, 228
Csp6I	GTAC	2 cut(s)	4, 655
CviAII	CATG	1 cut(s)	352
CviQI	GTAC	2 cut(s)	4, 655
DdeI	CTNAG	5 cut(s)	107, 332, 468, 513, 640
DpnI	GATC	2 cut(s)	160, 323
DpnII	GATC	2 cut(s)	158, 321
EaeI	YGGCCR	1 cut(s)	58
Eco147I	AGGCCT	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	355
FaiI	YATR	7 cut(s)	51, 78, 353, 434, 668, 678, 770
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	1 cut(s)	351
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	28, 222, 225
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	3 cut(s)	28, 222, 225
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	3 cut(s)	28, 222, 225
GsaI	CCCAGC	2 cut(s)	73, 102
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	8 cut(s)	9, 60, 97, 154, 338, 383, 457, 588
HapII	CCGG	2 cut(s)	113, 347
HgaI	GACGC	2 cut(s)	161, 228
HhaI	GCGC	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	509, 735, 748
HpaII	CCGG	2 cut(s)	113, 347
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	3 cut(s)	43, 294, 363
Hpy188III	TCNNGA	3 cut(s)	187, 647, 752
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	3 cut(s)	59, 301, 304
HpyAV	CCTTC	4 cut(s)	150, 371, 515, 552
HpyCH4III	ACNGT	2 cut(s)	65, 762
HpyCH4IV	ACGT	3 cut(s)	181, 299, 391
HpyCH4V	TGCA	4 cut(s)	447, 578, 635, 666
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 494, 602, 632
HpyF3I	CTNAG	5 cut(s)	107, 332, 468, 513, 640
HpySE526I	ACGT	3 cut(s)	181, 299, 391
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	158, 321
LmnI	GCTCC	3 cut(s)	197, 485, 631
LpnPI	CCDG	8 cut(s)	83, 112, 126, 319, 341, 360, 433, 468
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	3 cut(s)	181, 299, 391
MaeIII	GTNAC	2 cut(s)	177, 550
MalI	GATC	2 cut(s)	160, 323
MboI	GATC	2 cut(s)	158, 321
MboII	GAAGA	9 cut(s)	246, 249, 252, 255, 258, 261, 604, 629, 734
MhlI	GDGCHC	2 cut(s)	70, 140
MluCI	AATT	3 cut(s)	191, 243, 739
MlyI	GAGTC	2 cut(s)	742, 744
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	567
MspI	CCGG	2 cut(s)	113, 347
MspR9I	CCNGG	2 cut(s)	113, 347
MvnI	CGCG	2 cut(s)	172, 239
MwoI	GCNNNNNNNGC	4 cut(s)	108, 494, 602, 632
NciI	CCSGG	2 cut(s)	113, 347
NdeII	GATC	2 cut(s)	158, 321
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	2 cut(s)	199, 382
NmuCI	GTSAC	1 cut(s)	177
NspV	TTCGAA	1 cut(s)	615
PaqCI	CACCTGC	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	29, 223, 226
PleI	GAGTC	2 cut(s)	742, 743
PpsI	GAGTC	2 cut(s)	742, 743
PpuMI	RGGWCCY	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	561
PspFI	CCCAGC	2 cut(s)	69, 98
PspN4I	GGNNCC	2 cut(s)	199, 382
PspPI	GGNCC	5 cut(s)	96, 336, 381, 561, 587
PspPPI	RGGWCCY	1 cut(s)	561
PsyI	GACNNNGTC	1 cut(s)	298
RsaI	GTAC	2 cut(s)	5, 656
RsaNI	GTAC	2 cut(s)	4, 655
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	3 cut(s)	28, 222, 225
Sau3AI	GATC	2 cut(s)	158, 321
Sau96I	GGNCC	5 cut(s)	96, 336, 381, 561, 587
SchI	GAGTC	2 cut(s)	742, 744
ScrFI	CCNGG	2 cut(s)	113, 347
SduI	GDGCHC	2 cut(s)	70, 140
SfaNI	GCATC	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	615
SinI	GGWCC	1 cut(s)	561
SmlI	CTYRAG	2 cut(s)	591, 752
SmoI	CTYRAG	2 cut(s)	591, 752
Sse9I	AATT	3 cut(s)	191, 243, 739
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	5 cut(s)	28, 88, 222, 225, 237
SspMI	CTAG	1 cut(s)	647
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	111, 345
TaaI	ACNGT	2 cut(s)	65, 762
TaiI	ACGT	3 cut(s)	184, 302, 394
TaqI	TCGA	5 cut(s)	134, 157, 324, 375, 615
TasI	AATT	3 cut(s)	191, 243, 739
TauI	GCSGC	3 cut(s)	30, 224, 227
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	177
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	1 cut(s)	472
Tth111I	GACNNNGTC	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	647
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.