Rw4G010310

FGGY carbohydrate kinase domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002316
Physical Location & Seq
Forward (+)
23810933 .. 23811747
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G010310.1

Sequence Viewer

Length: 498 bp
ATGGTGTTAGTCTGTGGAACTTCTACTTGCCATCTGATTGTATCACAGAAGAAGCTTTTCATTCCAGGTGTCTGGGGTCTGTATTGGTCAGCTGTGGTACCTGAACAATGGCTCACAGAAGGTGGTCAGAGTGCTACGGGTGCATTATTGGATTACATAATTGAAAACCATGTTGCTTCTCCTCACCTTGCCAATCATGCTGCTTCTCAAAGCATTTATGTGTTTGAACTTCTGAACAAGATATTGGAAACAACGATGCATGAACTGAAGCGTCCGTTCCTTGCTTCTTTGACCGAAGATATTCATGTTCTTCCTGATTTTCATGGGAACAGGTCACCAATTGCAGATCCAAAAGCAAAAGGATTTATCTGTGGTTTAACACTTGATACAAGTGAGAAGCAATTGGCACTTCAATACCTTGCCACACTGCAAGGTACTTGGCACTTCAATACCTTGCCACACTGCAAGGTATTGCATATGGCACTCGCCATATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FGGY_C FGGY_N

Protein Analysis

165

Amino Acids

18.27

Weight (kDa)

6.34

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FGGY_C PF02782 2 - 146 7.1e-28 FGGY family of carbohydrate kinases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 97
AclWI GGATC 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 2 cut(s) 99, 436
AgsI TTSAA 4 cut(s) 164, 227, 413, 448
AjnI CCWGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 2 cut(s) 55, 92
AluI AGCT 2 cut(s) 55, 92
AlwI GGATC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 200
Asp700I GAANNNNTTC 2 cut(s) 56, 300
Asp718I GGTACC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 176, 327
BanI GGYRCC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 66
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 97
BssMI GATC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 66
BstEII GGTNACC 1 cut(s) 333
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 140, 197
BstNI CCWGG 1 cut(s) 66
BstPI GGTNACC 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 72
BstYI RGATCY 1 cut(s) 346
BtsI GCAGTG 2 cut(s) 425, 460
BtsIMutI CAGTG 2 cut(s) 425, 460
CseI GACGC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 98, 435
CviAII CATG 5 cut(s) 170, 197, 260, 305, 323
CviJI RGCY 3 cut(s) 55, 92, 112
CviKI_1 RGCY 3 cut(s) 55, 92, 112
CviQI GTAC 2 cut(s) 98, 435
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 287
Eco91I GGTNACC 1 cut(s) 333
EcoO65I GGTNACC 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 64
EcoT22I ATGCAT 1 cut(s) 261
FaeI CATG 5 cut(s) 173, 200, 263, 308, 326
FatI CATG 5 cut(s) 169, 196, 259, 304, 322
FauNDI CATATG 1 cut(s) 477
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HgaI GACGC 1 cut(s) 260
Hin1II CATG 5 cut(s) 173, 200, 263, 308, 326
HindIII AAGCTT 1 cut(s) 53
HphI GGTGA 2 cut(s) 176, 327
Hpy188I TCNGA 3 cut(s) 36, 129, 234
Hpy188III TCNNGA 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 6 cut(s) 143, 259, 344, 430, 465, 475
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 197
Hsp92II CATG 5 cut(s) 173, 200, 263, 308, 326
KpnI GGTACC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 51, 58, 78, 114, 316, 327
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 333
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 3 cut(s) 61, 302, 308
MfeI CAATTG 2 cut(s) 339, 401
MflI RGATCY 1 cut(s) 346
MluCI AATT 3 cut(s) 159, 339, 401
MnlI CCTC 1 cut(s) 192
Mph1103I ATGCAT 1 cut(s) 261
MroXI GAANNNNTTC 2 cut(s) 56, 300
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 66
MunI CAATTG 2 cut(s) 339, 401
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 140, 197
NdeI CATATG 1 cut(s) 477
NdeII GATC 1 cut(s) 346
NlaIII CATG 5 cut(s) 173, 200, 263, 308, 326
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 333
NsiI ATGCAT 1 cut(s) 261
PdmI GAANNNNTTC 2 cut(s) 56, 300
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 333
PspGI CCWGG 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 99, 436
RsaNI GTAC 2 cut(s) 98, 435
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 66
SfaNI GCATC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 3 cut(s) 159, 339, 401
StyD4I CCNGG 1 cut(s) 64
TaqII GACCGA 1 cut(s) 308
TasI AATT 3 cut(s) 159, 339, 401
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 2 cut(s) 432, 467
TseFI GTSAC 1 cut(s) 333
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 4 cut(s) 49, 276, 293, 311
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 2 cut(s) 432, 467
XmnI GAANNNNTTC 2 cut(s) 56, 300
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.