Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8189736.1

Orthogroup ID

OG0002316

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 663

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8189736.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 229 bp

atggtcttcaggtggatggacttgagtgattggttatcatacagggccacaggagatgatacgcgtagtctctgtacaacagtttgtaagtggacatatcttggtcatgcacatatgcagcaaaacaatgagaaagattctcgagacatggaagcttgtggatgggatgatgatttctgggaggagattggattaggtgatcttgtagaagggcatcatgctaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

76

Amino Acids

8.93

Weight (kDa)

4.63

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30310 AT4G30310 AT4G30310 AT4G30310
fragaria_vesca	FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080
malus_domestica	MD13G1267100.v1.1
prunus_persica	Prupe.1G089400_v2.0.a1 Prupe.1G089400_v2.0.a1
pyrus_communis	pycom13g22860
rosa_chinensis	RchiOBHm_Chr4g0403081 RchiOBHm_Chr4g0405011 RchiOBHm_Chr4g0405021
rosa_laevigata	RLG00000009027
rosa_multiflora	Rmu_co8073462.1_g000001 Rmu_co8189736.1_g000001 Rmu_sc0000225.1_g000012 Rmu_sc0001023.1_g000030 Rmu_ssc0000127.1_g000034
rosa_roxburghii	Rroxscaffold_5G00347760
rosa_rugosa	Rorug04G0040500 Rorug04G0052000 Rorug04G0052100
rosa_samantha	Rh4AG117900 Rh4AG127000 Rh4AG127200 Rh4BG110300 Rh4BG121100 Rh4CG124700 Rh4CG135100 Rh4CG135200 Rh4DG109800 Rh4DG110300 Rh4DG121400
rosa_wichuraiana	Rw4G009430 Rw4G009520 Rw4G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	62
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw26I	GTCTC	2 cut(s)	74, 138
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	2 cut(s)	10, 156
BcoDI	GTCTC	2 cut(s)	74, 138
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	45
BmsI	GCATC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	43
BseGI	GGATG	3 cut(s)	21, 167, 172
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	141
BsmAI	GTCTC	2 cut(s)	74, 138
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	199
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	74
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	21, 167, 172
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	74, 138
BstMBI	GATC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	21, 167, 172
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	3 cut(s)	107, 148, 218
CviJI	RGCY	2 cut(s)	47, 155
CviKI_1	RGCY	2 cut(s)	47, 155
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	141
FaeI	CATG	3 cut(s)	110, 151, 221
FaiI	YATR	7 cut(s)	40, 97, 108, 114, 116, 149, 219
FatI	CATG	3 cut(s)	106, 147, 217
FauNDI	CATATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	3 cut(s)	28, 174, 179
Fsp4HI	GCNGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	110, 151, 221
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	141, 143
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	2 cut(s)	110, 118
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	110, 151, 221
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	28, 36, 163
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	223
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MluI	ACGCGT	1 cut(s)	62
MnlI	CCTC	1 cut(s)	175
MvnI	CGCG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	114
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	3 cut(s)	110, 151, 221
PaeR7I	CTCGAG	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	45
SetI	ASST	3 cut(s)	14, 157, 199
SfaNI	GCATC	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	22, 141
SmoI	CTYRAG	2 cut(s)	22, 141
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	142
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.