Rorug04G0052100

FGGY carbohydrate kinase domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002316
Physical Location & Seq
Reverse (-)
8051698 .. 8053980
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0052100.1

Sequence Viewer

Length: 1185 bp
ATGGTGAGGCATGAGACGCGGCAAGTACTGTCAGAAATATGGGACACTTGCAACCTTCGATCTGTCCCGGTGTGGACGCCGCCGCGGAACGACGTTAGGAAAAATGGGAAGTCCGTGCGGGATGCTGCAATACAGGTGGAGGAGAACATGGGCACGCAAACAATGAATGCCAAGCAGGTCTCACAATCTGATGTCGGCGAGGCTGTACGGGCTGTGTCAGCCACCTTAAGCAGCCCGGGTGAACCCCCATCAATGCCAATAAGAAGAACAATTGTTGCAACATGCGGGAATAAGAGGGCTCTGCTGTACCGCGATGAAATCTCCTGCTTGGGACCTGACAAATTTATGACCAGCTTTGTCATAAATTTTGCTGCTGATGGATTGAACAGTCCAGAGTCTACTGACTGGTTTTTGCCTACTTACTTCTCGGAGAAGGCAAACACGTATGACGCAGGGGAGTCATCATTTCGGGATTGGGTTGAGCACACCCGCACACTCTGCAATCTGGACTGGTTCAATGGTCTATTGGAGAAGTGCAAGAGGATTTTCCTGCCGATGCACGATAAAAATAATGGGGGACATTGGTTCTTGATGGTTGTTGATATGCATAAGAAGGTTGCTGAGATTTGGGACAGTCTCCCTAGTTTCTTTGGCGACAGTCGGAGATGGGAAATTGCAATAAGAACTCTGCGCCATCTTGACCATTGCTTCTACTTTGAGAAGATGAGGCTGAAAGGTAGCACTGACTTTGGGATGTTTGATCATGTTGTTCCTGACAATGTTCCAACACAGAAAAATGGAGTTGATTGTGGCGTCTTCGTCATCCAGAACATGATGCACTTTAAGACTAAGTGGAATGAAGGGGCCACTTCACATCAGCTTCGATGCAACGTCCTGCTTCGCTGTCTCAAGTCCCCCGCAAATGAGAGGACAAAATTTACACTTAGGGAGGCAAGAGGATTTGCTACTGCTGATGGCTTGGGCAGAAGTTTAAAGGATCCAAATGACATATTGGGATCCGCTGGATGGGATGCCATTGATTTGGCTGAGCTAGAAGAGGTGGGTGCTGGGTTGGGTGTTGGTGAAGATGGGTTACAGAGCTTGGCAGGAGGGAAGGATTATGTGACGTTCAAGGGGAATAACGATCTCACCAGCGGTTTTCCCACTGAACTCTTCCGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FGGY_C FGGY_N

Protein Analysis

394

Amino Acids

44.34

Weight (kDa)

6.23

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 145 - 281 3.6e-14 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 398
AccII CGCG 3 cut(s) 19, 85, 312
AclWI GGATC 4 cut(s) 992, 1005, 1011, 1024
AcsI RAATTY 3 cut(s) 341, 364, 935
AcyI GRCGYC 2 cut(s) 77, 813
AfaI GTAC 3 cut(s) 27, 207, 308
AfiI CCNNNNNNNGG 1 cut(s) 1026
AflII CTTAAG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 3 cut(s) 385, 517, 1132
AluBI AGCT 4 cut(s) 354, 880, 1051, 1101
AluI AGCT 4 cut(s) 354, 880, 1051, 1101
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 4 cut(s) 8, 184, 641, 911
AlwI GGATC 4 cut(s) 992, 1005, 1011, 1024
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 1 cut(s) 864
ApeKI GCWGC 3 cut(s) 125, 231, 371
ApoI RAATTY 3 cut(s) 341, 364, 935
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 2 cut(s) 332, 864
AsuC2I CCSGG 3 cut(s) 68, 236, 237
AsuHPI GGTGA 4 cut(s) 16, 251, 1094, 1141
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 155
BamHI GGATCC 2 cut(s) 997, 1016
BanII GRGCYC 1 cut(s) 301
BarI GAAGNNNNNNTAC 2 cut(s) 1077, 1109
BbsI GAAGAC 1 cut(s) 808
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 112, 243, 358
BccI CCATC 8 cut(s) 256, 371, 586, 660, 702, 968, 1020, 1082
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 3 cut(s) 68, 236, 237
BcoDI GTCTC 4 cut(s) 8, 184, 641, 911
BfaI CTAG 2 cut(s) 642, 1052
BfrI CTTAAG 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 6 cut(s) 20, 80, 83, 126, 232, 372
BlpI GCTNAGC 1 cut(s) 1047
BlsI GCNGC 6 cut(s) 21, 81, 84, 127, 233, 373
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 3 cut(s) 68, 236, 237
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 332, 864
BmiI GGNNCC 4 cut(s) 333, 865, 999, 1018
BmrFI CCNGG 3 cut(s) 68, 236, 237
BmsI GCATC 5 cut(s) 112, 546, 825, 875, 1021
BpiI GAAGAC 1 cut(s) 808
Bpu1102I GCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 3 cut(s) 68, 236, 237
BsaAI YACGTR 1 cut(s) 444
BsaHI GRCGYC 2 cut(s) 77, 813
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 83, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 1026
Bse1I ACTGG 2 cut(s) 410, 515
Bse3DI GCAATG 1 cut(s) 703
BseDI CCNNGG 2 cut(s) 83, 235
BseGI GGATG 5 cut(s) 127, 759, 822, 1031, 1036
BseLI CCNNNNNNNGG 1 cut(s) 1026
BseMI GCAATG 1 cut(s) 703
BseMII CTCAG 2 cut(s) 612, 1038
BseNI ACTGG 2 cut(s) 410, 515
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 3 cut(s) 112, 243, 358
BseYI CCCAGC 1 cut(s) 1067
Bsh1236I CGCG 3 cut(s) 19, 85, 312
BshFI GGCC 1 cut(s) 866
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 68, 236
BslFI GGGAC 6 cut(s) 50, 56, 345, 591, 644, 898
BslI CCNNNNNNNGG 1 cut(s) 1026
BsmAI GTCTC 4 cut(s) 8, 184, 641, 911
BsmBI CGTCTC 1 cut(s) 8
BsmFI GGGAC 6 cut(s) 50, 56, 345, 591, 644, 898
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 1 cut(s) 866
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 3 cut(s) 155, 301, 486
Bsp143I GATC 5 cut(s) 59, 760, 997, 1016, 1144
Bsp1720I GCTNAGC 1 cut(s) 1047
BspANI GGCC 1 cut(s) 866
BspCNI CTCAG 2 cut(s) 613, 1039
BspFNI CGCG 3 cut(s) 19, 85, 312
BspLI GGNNCC 4 cut(s) 333, 865, 999, 1018
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 4 cut(s) 992, 1005, 1011, 1024
BspTI CTTAAG 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 703
BsrI ACTGG 2 cut(s) 410, 515
BssECI CCNNGG 2 cut(s) 83, 235
BssMI GATC 5 cut(s) 59, 760, 997, 1016, 1144
BssNI GRCGYC 2 cut(s) 77, 813
Bst4CI ACNGT 4 cut(s) 30, 389, 635, 659
Bst6I CTCTTC 2 cut(s) 1050, 1178
BstACI GRCGYC 2 cut(s) 77, 813
BstAFI CTTAAG 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 498
BstBAI YACGTR 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 4 cut(s) 621, 849, 944, 1047
BstDSI CCRYGG 1 cut(s) 83
BstF5I GGATG 5 cut(s) 127, 759, 822, 1031, 1036
BstFNI CGCG 3 cut(s) 19, 85, 312
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 5 cut(s) 62, 763, 1000, 1019, 1147
BstMAI GTCTC 4 cut(s) 8, 184, 641, 911
BstMBI GATC 5 cut(s) 59, 760, 997, 1016, 1144
BstMWI GCNNNNNNNGC 4 cut(s) 16, 209, 218, 498
BstNSI RCATGY 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 66, 234, 235
BstSLI GKGCMC 1 cut(s) 155
BstUI CGCG 3 cut(s) 19, 85, 312
BstV1I GCAGC 3 cut(s) 112, 243, 358
BstV2I GAAGAC 1 cut(s) 808
BstX2I RGATCY 2 cut(s) 997, 1016
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstYI RGATCY 2 cut(s) 997, 1016
BsuRI GGCC 1 cut(s) 866
BtgI CCRYGG 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 327
BtsCI GGATG 5 cut(s) 127, 759, 822, 1031, 1036
BtsIMutI CAGTG 2 cut(s) 741, 1164
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 693
Cfr13I GGNCC 2 cut(s) 332, 864
Cfr42I CCGCGG 1 cut(s) 86
Cfr9I CCCGGG 1 cut(s) 235
CseI GACGC 4 cut(s) 25, 85, 458, 802
Csp6I GTAC 3 cut(s) 26, 206, 307
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 5 cut(s) 11, 148, 282, 764, 832
CviQI GTAC 3 cut(s) 26, 206, 307
DdeI CTNAG 4 cut(s) 621, 849, 944, 1047
DpnI GATC 5 cut(s) 61, 762, 999, 1018, 1146
DpnII GATC 5 cut(s) 59, 760, 997, 1016, 1144
DraI TTTAAA 1 cut(s) 993
Eam1104I CTCTTC 2 cut(s) 1050, 1178
EarI CTCTTC 2 cut(s) 1050, 1178
Eco24I GRGCYC 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 235
EcoO109I RGGNCCY 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 5 cut(s) 14, 151, 285, 767, 835
FaqI GGGAC 6 cut(s) 50, 56, 345, 591, 644, 898
FatI CATG 5 cut(s) 10, 147, 281, 763, 831
FauI CCCGC 4 cut(s) 111, 278, 497, 925
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 398
Fnu4HI GCNGC 6 cut(s) 20, 80, 83, 126, 232, 372
FokI GGATG 5 cut(s) 134, 766, 809, 1038, 1043
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 6 cut(s) 20, 80, 83, 126, 232, 372
FspBI CTAG 2 cut(s) 642, 1052
GlaI GCGC 1 cut(s) 692
GluI GCNGC 6 cut(s) 20, 80, 83, 126, 232, 372
GsaI CCCAGC 1 cut(s) 1071
HaeIII GGCC 1 cut(s) 866
HapII CCGG 2 cut(s) 68, 236
HgaI GACGC 4 cut(s) 25, 85, 458, 802
HhaI GCGC 1 cut(s) 693
Hin1I GRCGYC 2 cut(s) 77, 813
Hin1II CATG 5 cut(s) 14, 151, 285, 767, 835
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HinfI GANTC 2 cut(s) 395, 458
HpaII CCGG 2 cut(s) 68, 236
HphI GGTGA 4 cut(s) 16, 251, 1094, 1141
Hpy166II GTNNAC 3 cut(s) 75, 242, 399
Hpy188I TCNGA 4 cut(s) 34, 190, 430, 663
Hpy188III TCNNGA 7 cut(s) 392, 470, 506, 589, 698, 773, 826
Hpy8I GTNNAC 3 cut(s) 75, 242, 399
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 5 cut(s) 65, 427, 607, 854, 1108
HpyCH4III ACNGT 4 cut(s) 30, 389, 635, 659
HpyCH4IV ACGT 4 cut(s) 93, 443, 891, 1127
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 209, 218, 498
HpyF3I CTNAG 4 cut(s) 621, 849, 944, 1047
HpySE526I ACGT 4 cut(s) 93, 443, 891, 1127
Hsp92I GRCGYC 2 cut(s) 77, 813
Hsp92II CATG 5 cut(s) 14, 151, 285, 767, 835
HspAI GCGC 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 760
KspI CCGCGG 1 cut(s) 86
Kzo9I GATC 5 cut(s) 59, 760, 997, 1016, 1144
Lsp1109I GCAGC 3 cut(s) 112, 243, 358
LweI GCATC 5 cut(s) 112, 546, 825, 875, 1021
MaeI CTAG 2 cut(s) 642, 1052
MaeII ACGT 4 cut(s) 93, 443, 891, 1127
MaeIII GTNAC 2 cut(s) 1092, 1123
MalI GATC 5 cut(s) 61, 762, 999, 1018, 1146
MboI GATC 5 cut(s) 59, 760, 997, 1016, 1144
MboII GAAGA 6 cut(s) 276, 733, 808, 1067, 1097, 1165
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 2 cut(s) 997, 1016
MhlI GDGCHC 3 cut(s) 155, 301, 486
MluCI AATT 5 cut(s) 270, 341, 364, 672, 935
MlyI GAGTC 2 cut(s) 404, 467
MmeI TCCRAC 2 cut(s) 641, 809
Mph1103I ATGCAT 1 cut(s) 609
MseI TTAA 3 cut(s) 227, 843, 992
MspA1I CMGCKG 3 cut(s) 85, 1022, 1155
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 2 cut(s) 68, 236
MspR9I CCNGG 3 cut(s) 68, 236, 237
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 172
MvnI CGCG 3 cut(s) 19, 85, 312
MwoI GCNNNNNNNGC 4 cut(s) 16, 209, 218, 498
NciI CCSGG 3 cut(s) 68, 236, 237
NdeII GATC 5 cut(s) 59, 760, 997, 1016, 1144
NlaIII CATG 5 cut(s) 14, 151, 285, 767, 835
NlaIV GGNNCC 4 cut(s) 333, 865, 999, 1018
NmuCI GTSAC 1 cut(s) 1123
NsiI ATGCAT 1 cut(s) 609
NspI RCATGY 1 cut(s) 285
PctI GAATGC 1 cut(s) 172
PkrI GCNGC 6 cut(s) 21, 81, 84, 127, 233, 373
PleI GAGTC 2 cut(s) 403, 466
PpsI GAGTC 2 cut(s) 403, 466
Ppu21I YACGTR 1 cut(s) 444
PpuMI RGGWCCY 1 cut(s) 332
Psp5II RGGWCCY 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 1067
PspN4I GGNNCC 4 cut(s) 333, 865, 999, 1018
PspPI GGNCC 2 cut(s) 332, 864
PspPPI RGGWCCY 1 cut(s) 332
PsuI RGATCY 2 cut(s) 997, 1016
RsaI GTAC 3 cut(s) 27, 207, 308
RsaNI GTAC 3 cut(s) 26, 206, 307
SacII CCGCGG 1 cut(s) 86
SaqAI TTAA 3 cut(s) 227, 843, 992
SatI GCNGC 6 cut(s) 20, 80, 83, 126, 232, 372
Sau3AI GATC 5 cut(s) 59, 760, 997, 1016, 1144
Sau96I GGNCC 2 cut(s) 332, 864
ScaI AGTACT 1 cut(s) 27
SchI GAGTC 2 cut(s) 404, 467
ScrFI CCNGG 3 cut(s) 68, 236, 237
SduI GDGCHC 3 cut(s) 155, 301, 486
SfaNI GCATC 5 cut(s) 112, 546, 825, 875, 1021
Sfr303I CCGCGG 1 cut(s) 86
SgrBI CCGCGG 1 cut(s) 86
SinI GGWCC 1 cut(s) 332
SmaI CCCGGG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 226, 908
SmoI CTYRAG 2 cut(s) 226, 908
Sse9I AATT 5 cut(s) 270, 341, 364, 672, 935
SspMI CTAG 2 cut(s) 642, 1052
StyD4I CCNGG 3 cut(s) 66, 234, 235
TaaI ACNGT 4 cut(s) 30, 389, 635, 659
TaiI ACGT 4 cut(s) 96, 446, 894, 1130
TaqI TCGA 2 cut(s) 58, 883
TasI AATT 5 cut(s) 270, 341, 364, 672, 935
TatI WGTACW 1 cut(s) 25
TauI GCSGC 3 cut(s) 22, 82, 85
Tru1I TTAA 3 cut(s) 227, 843, 992
Tru9I TTAA 3 cut(s) 227, 843, 992
TscAI CASTG 2 cut(s) 748, 1171
TseFI GTSAC 1 cut(s) 1123
TseI GCWGC 3 cut(s) 125, 231, 371
Tsp45I GTSAC 1 cut(s) 1123
TspDTI ATGAA 3 cut(s) 179, 330, 873
TspGWI ACGGA 2 cut(s) 103, 1166
TspMI CCCGGG 1 cut(s) 235
TspRI CASTG 2 cut(s) 748, 1171
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 3 cut(s) 341, 364, 935
XceI RCATGY 1 cut(s) 285
XmaI CCCGGG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 398
XspI CTAG 2 cut(s) 642, 1052
ZrmI AGTACT 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.