Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8073462.1

Orthogroup ID

OG0002316

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 560

Gene Structure 560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8073462.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

atggttgtatcacagaagaagcttttcattccaggtgtctggggtccgtattggtcagctatggtacctgaacagtggcttacagaaggtggtcagagtgctactggtgcattattggattacataattgaaaaccatgttgcttctcctcaccttgccaatcgtgctgcttctcaacgcatttctgtgtttgagcttctgaacaagatattggaaacaatgatgcatgatctgaagcgtccgttccttgcttctttgaccgaagatattcatgttcttcccgattttcatgggaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FGGY_C FGGY_N

Protein Analysis

99

Amino Acids

11.13

Weight (kDa)

5.88

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30310 AT4G30310 AT4G30310 AT4G30310
fragaria_vesca	FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080 FvH4_4g09080
malus_domestica	MD13G1267100.v1.1
prunus_persica	Prupe.1G089400_v2.0.a1 Prupe.1G089400_v2.0.a1
pyrus_communis	pycom13g22860
rosa_chinensis	RchiOBHm_Chr4g0403081 RchiOBHm_Chr4g0405011 RchiOBHm_Chr4g0405021
rosa_laevigata	RLG00000009027
rosa_multiflora	Rmu_co8073462.1_g000001 Rmu_co8189736.1_g000001 Rmu_sc0000225.1_g000012 Rmu_sc0001023.1_g000030 Rmu_ssc0000127.1_g000034
rosa_roxburghii	Rroxscaffold_5G00347760
rosa_rugosa	Rorug04G0040500 Rorug04G0052000 Rorug04G0052100
rosa_samantha	Rh4AG117900 Rh4AG127000 Rh4AG127200 Rh4BG110300 Rh4BG121100 Rh4CG124700 Rh4CG135100 Rh4CG135200 Rh4DG109800 Rh4DG110300 Rh4DG121400
rosa_wichuraiana	Rw4G009430 Rw4G009520 Rw4G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	22, 59, 196
AluI	AGCT	3 cut(s)	22, 59, 196
ApeKI	GCWGC	1 cut(s)	167
Asp700I	GAANNNNTTC	2 cut(s)	23, 267
Asp718I	GGTACC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	45, 66
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	45, 66
BspT107I	GGYRCC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	75
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 164
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	4 cut(s)	137, 227, 272, 290
CviJI	RGCY	4 cut(s)	22, 59, 79, 196
CviKI_1	RGCY	4 cut(s)	22, 59, 79, 196
CviQI	GTAC	1 cut(s)	65
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	228
FaeI	CATG	4 cut(s)	140, 230, 275, 293
FaiI	YATR	6 cut(s)	62, 125, 138, 228, 273, 291
FatI	CATG	4 cut(s)	136, 226, 271, 289
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	4 cut(s)	140, 230, 275, 293
HindIII	AAGCTT	1 cut(s)	20
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	96, 201, 234
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	110, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 164
Hsp92II	CATG	4 cut(s)	140, 230, 275, 293
KpnI	GGTACC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	5 cut(s)	18, 25, 45, 81, 90
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	213
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	3 cut(s)	28, 269, 275
MluCI	AATT	1 cut(s)	126
MnlI	CCTC	1 cut(s)	159
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	2 cut(s)	23, 267
MslI	CAYNNNNRTG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	107, 164
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	140, 230, 275, 293
NlaIV	GGNNCC	2 cut(s)	45, 66
NsiI	ATGCAT	1 cut(s)	228
PdmI	GAANNNNTTC	2 cut(s)	23, 267
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	45, 66
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	185
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	7 cut(s)	24, 37, 61, 70, 91, 156, 198
SfaNI	GCATC	1 cut(s)	213
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	126
TscAI	CASTG	1 cut(s)	80
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	16, 260, 278
TspGWI	ACGGA	2 cut(s)	36, 231
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	23, 267
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.