RchiOBHm_Chr5g0001871

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008844
Physical Location & Seq
Forward (+)
1033295 .. 1034784
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28326

Sequence Viewer

Length: 1161 bp
ATGAACATTGGAATATGCATAGGATTCCCATCAGTCCAAAGTCTAAGAGACACGAAGAAGCAGCACGGCATAGTGGTGAAGCTTACCGAAATTCTGGCTAAAGAAGACAAGTCATGGCAGGGTCCTGCAGATGGTGCTATGCCAAAAGAATATAATAATTCTACTGGTGCTCCTATGCCAAAAATTAATAATAATACTACTGATGGTCAACGTGACACTCCACTTATTGCAGCTGCAAAGAATGGGATCCCAGAGATTGTTGAGGCCATCTTGAAAGTGTTCCCACAGGCCATCGGGCATGAAAACCACAAAAAAGAAAATGTATTTCATGTTGCTGTGCAGAATCGCAGGACAAATGTCTTGAATCTTCTCAAATCTTATAAATTTGACTATTCGAGGCTCATTTGGAAGTTCAATGCAGATGGTGATGGTATTTTGCATAAAGCTGCATACAAGACTGGTATTTCCTCAAGGGAGAGGCCCGGGGAAGCCCTTTGCTTGCAGTCAGATATTCAATGGTTTGAGCGAGTGAGGAAAATGGTGCCTGCACATCACGCTAACCTACAAAATAAGAAAGAATGTACGCCTCAATCTTTGTTCACAAAAGAGCATGAGAAGCTCGTCAAGAAAGGCCAAGAATGGTTAATCAGAACAACAAACTCATGCATTATAGTTGCAGTTCTTATTGCAACTGTTGCTTTTACAAGTATCTACACCGTGCCTGGCGGTTCTGATGCAAAGACAGGCAAGCCGTTGCTCCTCAACACAACTGCATTCACGGTCTTCACAGCATCTGATGTGGCATCTCTTTGTTTTGCCTTCACCTCAGTGGTGGTGTTTCTTTCCATCACTACATCAAAAATGAATGAGAAAGATTTTCGGATGTCTCTGCCTCTAAAGCTTGTTTTGGGGCTCAGCATGCTGTTTTTTTCAGTGGCAGCATTGATGATTGGTTTTGCTGCTACTCTTGTCATGACAATAAGGCACAGGCTACATCAGGCTGCTGCCCCCATCATTGCCATTGCTTGTTTTCCTGTCGCCTTTTTCCTCTTCCTCCAGCTTCGTCTCTATACCAATATTACTTGGTTTACCATAAAGGACTTGCTGCGCAGCCTCATTGATATTATTCCGAAAAAAATGTCAGCCTCGATCATAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

386

Amino Acids

42.94

Weight (kDa)

9.58

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 64 - 131 2.4e-06 Ankyrin repeats (3 copies)
PGG PF13962 213 - 325 6.1e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
Acc16I TGCGCA 1 cut(s) 1109
AccB1I GGYRCC 1 cut(s) 541
AciI CCGC 1 cut(s) 726
AclWI GGATC 2 cut(s) 241, 254
AcsI RAATTY 2 cut(s) 90, 383
AfaI GTAC 1 cut(s) 583
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 4 cut(s) 274, 364, 415, 515
AjnI CCWGG 1 cut(s) 721
AleI CACNNNNGTG 1 cut(s) 827
AluBI AGCT 6 cut(s) 82, 233, 446, 619, 901, 1060
AluI AGCT 6 cut(s) 82, 233, 446, 619, 901, 1060
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 3 cut(s) 42, 891, 1070
AlwI GGATC 2 cut(s) 241, 254
AlwNI CAGNNNCTG 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 482
AoxI GGCC 4 cut(s) 264, 288, 479, 631
ApoI RAATTY 2 cut(s) 90, 383
ArsI GACNNNNNNTTYG 2 cut(s) 1124, 1156
AseI ATTAAT 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 1110
AspS9I GGNCC 2 cut(s) 122, 480
AsuC2I CCSGG 2 cut(s) 483, 484
AsuHPI GGTGA 3 cut(s) 88, 437, 814
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 122
BamHI GGATCC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 541
BanII GRGCYC 1 cut(s) 915
BbsI GAAGAC 2 cut(s) 111, 775
Bbv12I GWGCWC 1 cut(s) 172
BccI CCATC 9 cut(s) 37, 125, 197, 275, 299, 416, 422, 854, 1019
BceAI ACGGC 2 cut(s) 82, 736
BciT130I CCWGG 1 cut(s) 723
BcnI CCSGG 2 cut(s) 483, 484
BcoDI GTCTC 3 cut(s) 42, 891, 1070
BfaI CTAG 1 cut(s) 1159
BfmI CTRYAG 1 cut(s) 126
BlpI GCTNAGC 1 cut(s) 914
Bme1390I CCNGG 3 cut(s) 483, 484, 723
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 2 cut(s) 122, 480
BmiI GGNNCC 3 cut(s) 123, 248, 543
BmrFI CCNGG 3 cut(s) 483, 484, 723
BmsI GCATC 3 cut(s) 724, 800, 812
BoxI GACNNNNGTC 1 cut(s) 356
BpiI GAAGAC 2 cut(s) 111, 775
BpmI CTGGAG 1 cut(s) 1040
Bpu1102I GCTNAGC 1 cut(s) 914
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 483, 484
BsaBI GATNNNNATC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 482, 483
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 169, 463
Bse3DI GCAATG 2 cut(s) 1014, 1020
Bse8I GATNNNNATC 1 cut(s) 28
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 2 cut(s) 482, 483
BseGI GGATG 1 cut(s) 888
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 2 cut(s) 1014, 1020
BseMII CTCAG 2 cut(s) 840, 928
BseNI ACTGG 2 cut(s) 169, 463
BseRI GAGGAG 1 cut(s) 749
BsgI GTGCAG 2 cut(s) 359, 531
BshFI GGCC 4 cut(s) 266, 290, 481, 633
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 3 cut(s) 42, 891, 1070
BsmBI CGTCTC 1 cut(s) 1070
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 4 cut(s) 266, 290, 481, 633
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 172, 915
Bsp143I GATC 2 cut(s) 246, 1149
Bsp1720I GCTNAGC 1 cut(s) 914
BspACI CCGC 1 cut(s) 726
BspANI GGCC 4 cut(s) 266, 290, 481, 633
BspCNI CTCAG 2 cut(s) 839, 927
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 3 cut(s) 123, 248, 543
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 241, 254
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 1014, 1020
BsrI ACTGG 2 cut(s) 169, 463
BssECI CCNNGG 2 cut(s) 482, 483
BssMI GATC 2 cut(s) 246, 1149
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 3 cut(s) 694, 718, 781
Bst6I CTCTTC 1 cut(s) 1055
BstAPI GCANNNNNTGC 2 cut(s) 134, 695
BstC8I GCNNGC 4 cut(s) 500, 546, 749, 920
BstDEI CTNAG 3 cut(s) 44, 826, 914
BstF5I GGATG 1 cut(s) 888
BstHHI GCGC 1 cut(s) 1110
BstKTI GATC 2 cut(s) 249, 1152
BstMAI GTCTC 3 cut(s) 42, 891, 1070
BstMBI GATC 2 cut(s) 246, 1149
BstMWI GCNNNNNNNGC 6 cut(s) 134, 554, 616, 695, 898, 919
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 1 cut(s) 922
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 3 cut(s) 481, 482, 721
BstSFI CTRYAG 1 cut(s) 126
BstV2I GAAGAC 2 cut(s) 111, 775
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BsuRI GGCC 4 cut(s) 266, 290, 481, 633
BtsCI GGATG 1 cut(s) 888
BtsIMutI CAGTG 2 cut(s) 834, 939
Cac8I GCNNGC 4 cut(s) 500, 546, 749, 920
CaiI CAGNNNCTG 1 cut(s) 794
CciI TCATGA 1 cut(s) 972
CfoI GCGC 1 cut(s) 1110
Cfr13I GGNCC 2 cut(s) 122, 480
Cfr9I CCCGGG 1 cut(s) 482
Csp6I GTAC 1 cut(s) 582
CviAII CATG 7 cut(s) 114, 299, 329, 611, 663, 919, 973
CviQI GTAC 1 cut(s) 582
DdeI CTNAG 3 cut(s) 44, 826, 914
DpnI GATC 2 cut(s) 248, 1151
DpnII GATC 2 cut(s) 246, 1149
Eam1104I CTCTTC 1 cut(s) 1055
EarI CTCTTC 1 cut(s) 1055
Eco24I GRGCYC 1 cut(s) 915
Eco47I GGWCC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 482
EcoO109I RGGNCCY 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 721
EcoT22I ATGCAT 2 cut(s) 20, 668
EcoT38I GRGCYC 1 cut(s) 915
Esp3I CGTCTC 1 cut(s) 1070
FaeI CATG 7 cut(s) 117, 302, 332, 614, 666, 922, 976
FatI CATG 7 cut(s) 113, 298, 328, 610, 662, 918, 972
FokI GGATG 1 cut(s) 895
FriOI GRGCYC 1 cut(s) 915
FspBI CTAG 1 cut(s) 1159
FspI TGCGCA 1 cut(s) 1109
GlaI GCGC 1 cut(s) 1109
GsuI CTGGAG 1 cut(s) 1040
HaeIII GGCC 4 cut(s) 266, 290, 481, 633
HapII CCGG 1 cut(s) 483
HhaI GCGC 1 cut(s) 1110
Hin1II CATG 7 cut(s) 117, 302, 332, 614, 666, 922, 976
Hin6I GCGC 1 cut(s) 1108
HinP1I GCGC 1 cut(s) 1108
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HindIII AAGCTT 2 cut(s) 80, 899
HinfI GANTC 3 cut(s) 24, 343, 364
HpaII CCGG 1 cut(s) 483
HphI GGTGA 3 cut(s) 88, 437, 814
Hpy166II GTNNAC 3 cut(s) 209, 600, 1089
Hpy188I TCNGA 6 cut(s) 508, 650, 733, 796, 882, 1131
Hpy188III TCNNGA 4 cut(s) 271, 361, 625, 973
Hpy8I GTNNAC 3 cut(s) 209, 600, 1089
HpyAV CCTTC 1 cut(s) 829
HpyCH4III ACNGT 3 cut(s) 694, 718, 781
HpyCH4IV ACGT 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 554, 616, 695, 898, 919
HpyF3I CTNAG 3 cut(s) 44, 826, 914
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 7 cut(s) 117, 302, 332, 614, 666, 922, 976
HspAI GCGC 1 cut(s) 1108
Kzo9I GATC 2 cut(s) 246, 1149
LmnI GCTCC 2 cut(s) 175, 762
LweI GCATC 3 cut(s) 724, 800, 812
MaeI CTAG 1 cut(s) 1159
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 248, 1151
MboI GATC 2 cut(s) 246, 1149
MboII GAAGA 5 cut(s) 67, 116, 359, 775, 1042
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 2 cut(s) 172, 915
MluCI AATT 4 cut(s) 90, 157, 183, 383
Mph1103I ATGCAT 2 cut(s) 20, 668
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 2 cut(s) 186, 644
MslI CAYNNNNRTG 2 cut(s) 74, 827
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 3 cut(s) 483, 484, 723
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 1 cut(s) 723
MwoI GCNNNNNNNGC 6 cut(s) 134, 554, 616, 695, 898, 919
NciI CCSGG 2 cut(s) 483, 484
NdeII GATC 2 cut(s) 246, 1149
NlaIII CATG 7 cut(s) 117, 302, 332, 614, 666, 922, 976
NlaIV GGNNCC 3 cut(s) 123, 248, 543
NmuCI GTSAC 1 cut(s) 212
NsbI TGCGCA 1 cut(s) 1109
NsiI ATGCAT 2 cut(s) 20, 668
NspI RCATGY 1 cut(s) 922
OliI CACNNNNGTG 1 cut(s) 827
PaeI GCATGC 1 cut(s) 922
PagI TCATGA 1 cut(s) 972
PctI GAATGC 1 cut(s) 773
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 3 cut(s) 24, 343, 364
PpuMI RGGWCCY 1 cut(s) 122
PshAI GACNNNNGTC 1 cut(s) 356
PshBI ATTAAT 1 cut(s) 186
PsiI TTATAA 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 3 cut(s) 123, 248, 543
PspPI GGNCC 2 cut(s) 122, 480
PspPPI RGGWCCY 1 cut(s) 122
PstI CTGCAG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 583
RsaNI GTAC 1 cut(s) 582
RseI CAYNNNNRTG 2 cut(s) 74, 827
SaqAI TTAA 2 cut(s) 186, 644
Sau3AI GATC 2 cut(s) 246, 1149
Sau96I GGNCC 2 cut(s) 122, 480
ScrFI CCNGG 3 cut(s) 483, 484, 723
SduI GDGCHC 2 cut(s) 172, 915
SetI ASST 9 cut(s) 84, 214, 235, 448, 564, 621, 827, 903, 1062
SfaNI GCATC 3 cut(s) 724, 800, 812
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 122
SmaI CCCGGG 1 cut(s) 484
SmiMI CAYNNNNRTG 2 cut(s) 74, 827
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SphI GCATGC 1 cut(s) 922
Sse9I AATT 4 cut(s) 90, 157, 183, 383
SsiI CCGC 1 cut(s) 726
SspI AATATT 1 cut(s) 1078
SspMI CTAG 1 cut(s) 1159
StyD4I CCNGG 3 cut(s) 481, 482, 721
TaaI ACNGT 3 cut(s) 694, 718, 781
TaiI ACGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 395, 1148
TasI AATT 4 cut(s) 90, 157, 183, 383
TfiI GAWTC 3 cut(s) 24, 343, 364
Tru1I TTAA 2 cut(s) 186, 644
Tru9I TTAA 2 cut(s) 186, 644
TscAI CASTG 2 cut(s) 834, 939
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 17, 315, 317, 878
TspMI CCCGGG 1 cut(s) 482
TspRI CASTG 2 cut(s) 834, 939
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 2 cut(s) 90, 383
XceI RCATGY 1 cut(s) 922
XmaI CCCGGG 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 1 cut(s) 1159
Zsp2I ATGCAT 2 cut(s) 20, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.