Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008844

Physical Location & Seq

Genomic Coordinates Forward (+)

1074933 .. 1077468

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGACAGTAGTTATAAAAGTGTCGCCCGTATTTACAATTTCTTCTTGGAAAAGAAATGGAGTGACATAAGGATCTTTTACGAGGAAAACAATTTTGATGTGTTCCTGCTTCATAATGCTTTGGGAGATACGGCTCTTCACCTTGCAGTGTACAGTGAAGACCTGGAATTGGTGATTTCTCTGCTGGATATAGTGTACAAACACAATCCTTTTGCCGAAGCTGGTATAAAATTTCCCTTAGAGAATGCATCTGGAAACACACCACTTCATGAGGCAGCTTCAATAGGAAATGTTAAATTGGTAAGGACGATATTGAGATATGATGGCGATCAAATGCTGACGACAGTGAATAAGAATGGTGAAACACCTTTTTTTATGGCCGCACTTTATGGCCAGACCAATTTGATAAAAATTTTGGTGAACGATCTTAAGGACATAGATTATCATATCCTGTCTAATACCTCCACCATGCTTCATGAGGCTATCCGCGGCTATTACTTTGTTATGGTTATTTACATGCATGATGAAAAAGACATCGTTCAATTATTAGATTTTGGTGAGACGATTGGTCAGCCTTTGATCGGCCTTCCAGTTCGAGAAGATAAGGATGAAAGTGAAAACAACAATGTATCTCCGGTCAATCCAAGTCGAAAGACTGACAAAAAGCATGGATTCCCATCAGTCCAAAGTCTAAGAGACACGAAGAAGCAGCACAGCATAGTGGTGAAGCTTACCGAAATTCTGGCTAAAGAAGACAGGTCATGGCAGGGTCCTGCAGATGGTGCTATGCCAAAAGAATATAATAATTCTACTGGTGCTCCTATGCCAAAAATTAATAATAATACTACTGATGGTCAACGTGACACTCCACTTATTGCAGCTGCAAAGAATGGGATCCCAGAGATTGTTGAGGCCATCTTGAAAGTGTTCCCACAGGCCATCGGGCATGAAAACCACAAAAAAGAAAATGTATTTCATGTTGCTGTGCAGAATCGCAGGACAAATGTCTTGAATCTTCTCAAATCTTATAAATTTGACTACTCGAGGCTCATTTGGAAGTTCAATGCAGATGGTGATGGTATTTTGCATAAAGCTGCATACAAGACTGGTATTTCCTCAAGGGAGAGGCCCGGGGAAGCCCTTTGCTTGCAGTCAGATATTCAATGGTTTGAGCGAGTGAGGAAAATGGTGCCTGCACATCACGCTAACCTACAAAATAAGAAAGAATTGGCAGCACTGATGATTGGTTTTGCTGCTACTCTTGTCATGACAATAAGGCACAGGCTACATCAGGCTGCTGCCCCCATCATTGCCATTGCTTGTTTTCCTGTCGCCTTTTTCCTCCTCCTCCAGCTTCGTCTCTATACCAATATTACTTGGTTTACCATAAAGGACTTGCTGCGCAACCTCATTGATATTATTCCGAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

478

Amino Acids

54.14

Weight (kDa)

8.23

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	32 - 108	1.2e-07	Ankyrin repeats (3 copies)
Ank_2	PF12796	280 - 347	3.2e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01320
rosa_chinensis	RchiOBHm_Chr5g0001861 RchiOBHm_Chr5g0001871 RchiOBHm_Chr5g0001931
rosa_laevigata	RLG00000030979 RLG00000030982 RLG00000030983
rosa_multiflora	Rmu_sc0000378.1_g000006 Rmu_sc0000378.1_g000016 Rmu_sc0006008.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071330 Rroxscaffold_1G00074400 Rroxscaffold_1G00074490
rosa_rugosa	Rorug04G0393600 Rorug04G0393600 Rorug04G0393900
rosa_samantha	Rh5AG014900 Rh5BG018300 Rh5CG016000 Rh5DG016400 Rh5DG016900
rosa_wichuraiana	Rw5G001440 Rw5G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	15, 1029
Acc16I	TGCGCA	1 cut(s)	1403
AccB1I	GGYRCC	1 cut(s)	1189
AccII	CGCG	1 cut(s)	489
AciI	CCGC	3 cut(s)	381, 487, 489
AclWI	GGATC	3 cut(s)	80, 889, 902
AcoI	YGGCCR	2 cut(s)	378, 391
AcsI	RAATTY	4 cut(s)	230, 411, 738, 1031
AfaI	GTAC	2 cut(s)	152, 197
AfiI	CCNNNNNNNGG	3 cut(s)	169, 581, 779
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	6 cut(s)	282, 542, 922, 1012, 1063, 1163
AhdI	GACNNNNNGTC	1 cut(s)	567
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	6 cut(s)	221, 278, 730, 881, 1094, 1354
AluI	AGCT	6 cut(s)	221, 278, 730, 881, 1094, 1354
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	3 cut(s)	554, 690, 1364
AlwI	GGATC	3 cut(s)	80, 889, 902
Ama87I	CYCGRG	2 cut(s)	1042, 1130
AoxI	GGCC	6 cut(s)	378, 391, 583, 912, 936, 1127
ApoI	RAATTY	4 cut(s)	230, 411, 738, 1031
AseI	ATTAAT	1 cut(s)	834
Asp700I	GAANNNNTTC	1 cut(s)	926
AspLEI	GCGC	1 cut(s)	1404
AspS9I	GGNCC	2 cut(s)	770, 1128
AsuC2I	CCSGG	2 cut(s)	1131, 1132
AsuHPI	GGTGA	7 cut(s)	131, 184, 371, 430, 569, 736, 1085
AvaI	CYCGRG	2 cut(s)	1042, 1130
AvaII	GGWCC	1 cut(s)	770
BalI	TGGCCA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	894
BanI	GGYRCC	1 cut(s)	1189
BbsI	GAAGAC	2 cut(s)	165, 759
Bbv12I	GWGCWC	1 cut(s)	820
BccI	CCATC	9 cut(s)	317, 685, 773, 845, 923, 947, 1064, 1070, 1313
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	164
BcnI	CCSGG	2 cut(s)	1131, 1132
BcoDI	GTCTC	3 cut(s)	554, 690, 1364
BfmI	CTRYAG	1 cut(s)	774
BfrI	CTTAAG	1 cut(s)	428
Bme1390I	CCNGG	3 cut(s)	164, 1131, 1132
Bme18I	GGWCC	1 cut(s)	770
BmeRI	GACNNNNNGTC	1 cut(s)	567
BmeT110I	CYCGRG	2 cut(s)	1042, 1130
BmgT120I	GGNCC	2 cut(s)	770, 1128
BmiI	GGNNCC	3 cut(s)	771, 896, 1191
BmrFI	CCNGG	3 cut(s)	164, 1131, 1132
BmsI	GCATC	1 cut(s)	257
BoxI	GACNNNNGTC	1 cut(s)	1004
BpiI	GAAGAC	2 cut(s)	165, 759
BpmI	CTGGAG	1 cut(s)	1334
BpuEI	CTTGAG	1 cut(s)	1102
BpuMI	CCSGG	2 cut(s)	1131, 1132
BsaBI	GATNNNNATC	2 cut(s)	327, 676
BsaJI	CCNNGG	3 cut(s)	487, 1130, 1131
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 581, 779
Bse1I	ACTGG	3 cut(s)	590, 817, 1111
Bse3DI	GCAATG	2 cut(s)	1308, 1314
Bse8I	GATNNNNATC	2 cut(s)	327, 676
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	487, 1130, 1131
BseGI	GGATG	1 cut(s)	613
BseJI	GATNNNNATC	2 cut(s)	327, 676
BseLI	CCNNNNNNNGG	3 cut(s)	169, 581, 779
BseMI	GCAATG	2 cut(s)	1308, 1314
BseNI	ACTGG	3 cut(s)	590, 817, 1111
BseRI	GAGGAG	2 cut(s)	1334, 1337
BsgI	GTGCAG	2 cut(s)	1007, 1179
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	6 cut(s)	380, 393, 585, 914, 938, 1129
BshNI	GGYRCC	1 cut(s)	1189
BsiHKAI	GWGCWC	1 cut(s)	820
BsiHKCI	CYCGRG	2 cut(s)	1042, 1130
BsiSI	CCGG	2 cut(s)	635, 1131
BslI	CCNNNNNNNGG	3 cut(s)	169, 581, 779
BsmAI	GTCTC	3 cut(s)	554, 690, 1364
BsmBI	CGTCTC	2 cut(s)	554, 1364
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	6 cut(s)	380, 393, 585, 914, 938, 1129
BsoBI	CYCGRG	2 cut(s)	1042, 1130
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp1407I	TGTACA	2 cut(s)	150, 195
Bsp143I	GATC	5 cut(s)	72, 328, 424, 579, 894
BspACI	CCGC	3 cut(s)	381, 487, 489
BspANI	GGCC	6 cut(s)	380, 393, 585, 914, 938, 1129
BspFNI	CGCG	1 cut(s)	489
BspHI	TCATGA	3 cut(s)	268, 475, 1266
BspLI	GGNNCC	3 cut(s)	771, 896, 1191
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	3 cut(s)	80, 889, 902
BspQI	GCTCTTC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	1189
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	1308, 1314
BsrGI	TGTACA	2 cut(s)	150, 195
BsrI	ACTGG	3 cut(s)	590, 817, 1111
BssECI	CCNNGG	3 cut(s)	487, 1130, 1131
BssMI	GATC	5 cut(s)	72, 328, 424, 579, 894
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	8, 155, 346
Bst6I	CTCTTC	1 cut(s)	141
BstAFI	CTTAAG	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstAUI	TGTACA	2 cut(s)	150, 195
BstC8I	GCNNGC	2 cut(s)	1148, 1194
BstDEI	CTNAG	2 cut(s)	238, 692
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	1404
BstKTI	GATC	5 cut(s)	75, 331, 427, 582, 897
BstMAI	GTCTC	3 cut(s)	554, 690, 1364
BstMBI	GATC	5 cut(s)	72, 328, 424, 579, 894
BstMWI	GCNNNNNNNGC	2 cut(s)	782, 1202
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	520
BstPAI	GACNNNNGTC	1 cut(s)	1004
BstSCI	CCNGG	3 cut(s)	162, 1129, 1130
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	1 cut(s)	489
BstV2I	GAAGAC	2 cut(s)	165, 759
BstX2I	RGATCY	2 cut(s)	72, 894
BstYI	RGATCY	2 cut(s)	72, 894
BsuRI	GGCC	6 cut(s)	380, 393, 585, 914, 938, 1129
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	4 cut(s)	153, 160, 351, 1235
Cac8I	GCNNGC	2 cut(s)	1148, 1194
CciI	TCATGA	3 cut(s)	268, 475, 1266
CfoI	GCGC	1 cut(s)	1404
Cfr13I	GGNCC	2 cut(s)	770, 1128
Cfr42I	CCGCGG	1 cut(s)	490
Cfr9I	CCCGGG	1 cut(s)	1130
Csp6I	GTAC	2 cut(s)	151, 196
CviQI	GTAC	2 cut(s)	151, 196
DdeI	CTNAG	2 cut(s)	238, 692
DpnI	GATC	5 cut(s)	74, 330, 426, 581, 896
DpnII	GATC	5 cut(s)	72, 328, 424, 579, 894
DriI	GACNNNNNGTC	1 cut(s)	567
EaeI	YGGCCR	2 cut(s)	378, 391
Eam1104I	CTCTTC	1 cut(s)	141
Eam1105I	GACNNNNNGTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	770
Eco88I	CYCGRG	2 cut(s)	1042, 1130
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	162
EcoT22I	ATGCAT	2 cut(s)	250, 522
Esp3I	CGTCTC	2 cut(s)	554, 1364
FokI	GGATG	1 cut(s)	620
FspI	TGCGCA	1 cut(s)	1403
GlaI	GCGC	1 cut(s)	1403
GsuI	CTGGAG	1 cut(s)	1334
HaeIII	GGCC	6 cut(s)	380, 393, 585, 914, 938, 1129
HapII	CCGG	2 cut(s)	635, 1131
HhaI	GCGC	1 cut(s)	1404
Hin6I	GCGC	1 cut(s)	1402
HinP1I	GCGC	1 cut(s)	1402
HincII	GTYRAC	1 cut(s)	857
HindII	GTYRAC	1 cut(s)	857
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	3 cut(s)	672, 991, 1012
HpaII	CCGG	2 cut(s)	635, 1131
HphI	GGTGA	7 cut(s)	131, 184, 371, 430, 569, 736, 1085
Hpy166II	GTNNAC	5 cut(s)	151, 196, 421, 857, 1383
Hpy188I	TCNGA	2 cut(s)	1156, 1425
Hpy188III	TCNNGA	7 cut(s)	252, 269, 476, 596, 919, 1009, 1267
Hpy8I	GTNNAC	5 cut(s)	151, 196, 421, 857, 1383
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	3 cut(s)	8, 155, 346
HpyCH4IV	ACGT	1 cut(s)	859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	782, 1202
HpyF3I	CTNAG	2 cut(s)	238, 692
HpySE526I	ACGT	1 cut(s)	859
HspAI	GCGC	1 cut(s)	1402
KspI	CCGCGG	1 cut(s)	490
Kzo9I	GATC	5 cut(s)	72, 328, 424, 579, 894
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	823
LweI	GCATC	1 cut(s)	257
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	2 cut(s)	62, 860
MalI	GATC	5 cut(s)	74, 330, 426, 581, 896
MboI	GATC	5 cut(s)	72, 328, 424, 579, 894
MboII	GAAGA	7 cut(s)	34, 128, 170, 611, 715, 764, 1007
MflI	RGATCY	2 cut(s)	72, 894
MhlI	GDGCHC	1 cut(s)	820
MlsI	TGGCCA	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	393
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	2 cut(s)	250, 522
MroXI	GAANNNNTTC	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	3 cut(s)	294, 429, 834
MslI	CAYNNNNRTG	1 cut(s)	722
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	489, 881
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	2 cut(s)	635, 1131
MspR9I	CCNGG	3 cut(s)	164, 1131, 1132
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	782, 1202
NciI	CCSGG	2 cut(s)	1131, 1132
NdeII	GATC	5 cut(s)	72, 328, 424, 579, 894
NlaIV	GGNNCC	3 cut(s)	771, 896, 1191
NmuCI	GTSAC	2 cut(s)	62, 860
NsbI	TGCGCA	1 cut(s)	1403
NsiI	ATGCAT	2 cut(s)	250, 522
NspI	RCATGY	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	1042
PagI	TCATGA	3 cut(s)	268, 475, 1266
PciSI	GCTCTTC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	926
PfeI	GAWTC	3 cut(s)	672, 991, 1012
PpuMI	RGGWCCY	1 cut(s)	770
PshAI	GACNNNNGTC	1 cut(s)	1004
PshBI	ATTAAT	1 cut(s)	834
PsiI	TTATAA	2 cut(s)	15, 1029
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	771, 896, 1191
PspPI	GGNCC	2 cut(s)	770, 1128
PspPPI	RGGWCCY	1 cut(s)	770
PspXI	VCTCGAGB	1 cut(s)	1042
PstI	CTGCAG	1 cut(s)	778
PsuI	RGATCY	2 cut(s)	72, 894
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	2 cut(s)	152, 197
RsaNI	GTAC	2 cut(s)	151, 196
RseI	CAYNNNNRTG	1 cut(s)	722
SacII	CCGCGG	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	294, 429, 834
Sau3AI	GATC	5 cut(s)	72, 328, 424, 579, 894
Sau96I	GGNCC	2 cut(s)	770, 1128
ScrFI	CCNGG	3 cut(s)	164, 1131, 1132
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	774
Sfr274I	CTCGAG	1 cut(s)	1042
Sfr303I	CCGCGG	1 cut(s)	490
SgrBI	CCGCGG	1 cut(s)	490
SinI	GGWCC	1 cut(s)	770
SlaI	CTCGAG	1 cut(s)	1042
SmaI	CCCGGG	1 cut(s)	1132
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	3 cut(s)	428, 1042, 1117
SmoI	CTYRAG	3 cut(s)	428, 1042, 1117
SsiI	CCGC	3 cut(s)	381, 487, 489
SspI	AATATT	1 cut(s)	1372
StyD4I	CCNGG	3 cut(s)	162, 1129, 1130
TaaI	ACNGT	3 cut(s)	8, 155, 346
TaiI	ACGT	1 cut(s)	862
TaqI	TCGA	3 cut(s)	595, 649, 1043
TatI	WGTACW	2 cut(s)	150, 195
TauI	GCSGC	2 cut(s)	383, 492
TfiI	GAWTC	3 cut(s)	672, 991, 1012
Tru1I	TTAA	3 cut(s)	294, 429, 834
Tru9I	TTAA	3 cut(s)	294, 429, 834
TscAI	CASTG	4 cut(s)	153, 160, 351, 1242
TseFI	GTSAC	2 cut(s)	62, 860
Tsp45I	GTSAC	2 cut(s)	62, 860
TspDTI	ATGAA	7 cut(s)	101, 257, 464, 540, 624, 963, 965
TspMI	CCCGGG	1 cut(s)	1130
TspRI	CASTG	4 cut(s)	153, 160, 351, 1242
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	770
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	4 cut(s)	230, 411, 738, 1031
XceI	RCATGY	1 cut(s)	520
XhoI	CTCGAG	1 cut(s)	1042
XmaI	CCCGGG	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	926
Zsp2I	ATGCAT	2 cut(s)	250, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.