Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008844

Physical Location & Seq

Genomic Coordinates Forward (+)

1154988 .. 1157934

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTTCTTGCTGAGAGTCGAGTGCTGTTCCATTTAATTAGAAGCTTCAACTGTGCCATCTTGTCACTCATCTTTCTGATCATTACCGCTTGGAAGTCTCGGACAAAGACCTTGAAGCAATTGGTTCGGCTCGGCGCTAGTTCGCTCAGCTTTTTGAATTTGGAAAACTGTTGCTCGATTACAGATGGAGGTTTGAGGTTTGTCGCAAATGGGTCTTGCTCAAAAACCTTGAAGACATTGGTCCTTGCTGAGTGTGTTGACCTCACTGATTCAGGGGTCTCGCTTTTGTGGAACATGTGTTACTGGGAGGATCTGAATCTGGCTCGCTTGTTCAAGGATACCGCAGTTCATGTTGCAGTGTACAGTGACAACATAGAACTGGTTCAGTCTCTGCTTGACATGGTGCATAGAGAATACGCAGATTACTTTTTGGGAGGACCAGCAATATTTCAGAAACAGAATACATTTGGAAATACACCTCTTCACGAGGCAGCTTCGATAGGAAATGTCGACATGGTGAAGATCATAATGCAATATGATCCGAAGCAACTGAATACTAAAAACAAGAGAGGGTTCCCATCTATTAAAGATCTGTGGGACACAAAGAAGAAGCACGGCATAGCGGGGGAGCTTTCAAAAATTCTGGCTAGAGGAGACAAGTCATGGCAGGATAACAACACTGATGGTCAAAATGACACTCCACTTCTGGCTGCTGCTAGGAATGGGATTACAGAAATCATTGAGGCCATTTTTAATCTGTTCCCACAGGCCATCGAGCATGAAAACCACAAAAGAGAGAACATATTTCATGTTGTTGTGGAGCATAGGAGGAGACAGCTTTTGGAATATCTTCTCCGACCTTGTCATGTTTCATATCCGAGGCTCCTGTGGAAAATAAATCAAGACGGTGACGGCATTTTGCATAAAGCAGCATATAAGAGTCACTATTCCTCAAGGGAGAGGCCAGGGGAAGCCCTTCGCTTGCAGTCAGATATTCACTGGTTTGAGGTGCTTTTTCAGATTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

344

Amino Acids

39.2

Weight (kDa)

8.39

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	101 - 183	7.3e-09	Ankyrin repeats (3 copies)
Ank_4	PF13637	116 - 174	9.3e-07	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01320
rosa_chinensis	RchiOBHm_Chr5g0001861 RchiOBHm_Chr5g0001871 RchiOBHm_Chr5g0001931
rosa_laevigata	RLG00000030979 RLG00000030982 RLG00000030983
rosa_multiflora	Rmu_sc0000378.1_g000006 Rmu_sc0000378.1_g000016 Rmu_sc0006008.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071330 Rroxscaffold_1G00074400 Rroxscaffold_1G00074490
rosa_rugosa	Rorug04G0393600 Rorug04G0393600 Rorug04G0393900
rosa_samantha	Rh5AG014900 Rh5BG018300 Rh5CG016000 Rh5DG016400 Rh5DG016900
rosa_wichuraiana	Rw5G001440 Rw5G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	3 cut(s)	87, 342, 623
AclWI	GGATC	2 cut(s)	318, 533
AcsI	RAATTY	2 cut(s)	157, 639
AfaI	GTAC	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	6 cut(s)	49, 115, 157, 232, 334, 636
AjnI	CCWGG	1 cut(s)	964
AluBI	AGCT	5 cut(s)	45, 150, 494, 631, 838
AluI	AGCT	5 cut(s)	45, 150, 494, 631, 838
Alw26I	GTCTC	5 cut(s)	102, 283, 393, 648, 826
AlwI	GGATC	2 cut(s)	318, 533
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	3 cut(s)	744, 768, 962
ApeKI	GCWGC	4 cut(s)	491, 710, 713, 929
ApoI	RAATTY	2 cut(s)	157, 639
Asp700I	GAANNNNTTC	3 cut(s)	381, 849, 975
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	241, 437
AsuHPI	GGTGA	2 cut(s)	529, 920
AvaII	GGWCC	2 cut(s)	241, 437
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	503, 697, 700, 941
BccI	CCATC	5 cut(s)	65, 179, 586, 677, 779
BceAI	ACGGC	2 cut(s)	631, 928
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	1 cut(s)	966
BciVI	GTATCC	1 cut(s)	331
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	5 cut(s)	102, 283, 393, 648, 826
BfaI	CTAG	3 cut(s)	138, 648, 717
BfoI	RGCGCY	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	331
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	4 cut(s)	492, 711, 714, 930
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	4 cut(s)	493, 712, 715, 931
Bme1390I	CCNGG	1 cut(s)	966
Bme18I	GGWCC	2 cut(s)	241, 437
BmgT120I	GGNCC	2 cut(s)	241, 437
BmiI	GGNNCC	2 cut(s)	575, 884
BmrFI	CCNGG	1 cut(s)	966
BmrI	ACTGGG	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	313
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	937
BsaBI	GATNNNNATC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	878, 965
Bse1I	ACTGG	3 cut(s)	308, 384, 1004
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	2 cut(s)	878, 965
BseJI	GATNNNNATC	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	160, 240
BseNI	ACTGG	3 cut(s)	308, 384, 1004
BseRI	GAGGAG	2 cut(s)	666, 844
BseXI	GCAGC	4 cut(s)	503, 697, 700, 941
BshFI	GGCC	3 cut(s)	746, 770, 964
BslFI	GGGAC	1 cut(s)	611
BsmAI	GTCTC	5 cut(s)	102, 283, 393, 648, 826
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	3 cut(s)	746, 770, 964
Bso31I	GGTCTC	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	5 cut(s)	78, 310, 522, 538, 589
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	3 cut(s)	87, 342, 623
BspANI	GGCC	3 cut(s)	746, 770, 964
BspCNI	CTCAG	3 cut(s)	4, 159, 241
BspLI	GGNNCC	2 cut(s)	575, 884
BspPI	GGATC	2 cut(s)	318, 533
BspTNI	GGTCTC	1 cut(s)	283
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	308, 384, 1004
BssECI	CCNNGG	2 cut(s)	878, 965
BssMI	GATC	5 cut(s)	78, 310, 522, 538, 589
BssSI	CACGAG	1 cut(s)	485
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	4 cut(s)	53, 170, 365, 908
Bst6I	CTCTTC	1 cut(s)	486
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	325, 983
BstDEI	CTNAG	3 cut(s)	12, 146, 249
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	81, 313, 525, 541, 592
BstMAI	GTCTC	5 cut(s)	102, 283, 393, 648, 826
BstMBI	GATC	5 cut(s)	78, 310, 522, 538, 589
BstNI	CCWGG	1 cut(s)	966
BstNSI	RCATGY	1 cut(s)	298
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	964
BstV1I	GCAGC	4 cut(s)	503, 697, 700, 941
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	310, 589
BstYI	RGATCY	2 cut(s)	310, 589
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	746, 770, 964
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	5 cut(s)	264, 363, 370, 678, 997
Cac8I	GCNNGC	2 cut(s)	325, 983
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	241, 437
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	8 cut(s)	295, 350, 400, 514, 663, 779, 809, 866
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	3 cut(s)	12, 146, 249
DpnI	GATC	5 cut(s)	80, 312, 524, 540, 591
DpnII	GATC	5 cut(s)	78, 310, 522, 538, 589
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	2 cut(s)	241, 437
EcoRII	CCWGG	1 cut(s)	964
FaeI	CATG	8 cut(s)	298, 353, 403, 517, 666, 782, 812, 869
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	8 cut(s)	294, 349, 399, 513, 662, 778, 808, 865
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	4 cut(s)	492, 711, 714, 930
Fsp4HI	GCNGC	4 cut(s)	492, 711, 714, 930
FspBI	CTAG	3 cut(s)	138, 648, 717
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	4 cut(s)	492, 711, 714, 930
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	746, 770, 964
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	8 cut(s)	298, 353, 403, 517, 666, 782, 812, 869
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	2 cut(s)	259, 511
HindII	GTYRAC	2 cut(s)	259, 511
HindIII	AAGCTT	1 cut(s)	43
HinfI	GANTC	4 cut(s)	16, 269, 316, 940
HphI	GGTGA	2 cut(s)	529, 920
Hpy166II	GTNNAC	3 cut(s)	259, 361, 511
Hpy188I	TCNGA	9 cut(s)	78, 102, 315, 453, 543, 857, 879, 991, 1020
Hpy188III	TCNNGA	2 cut(s)	485, 902
Hpy8I	GTNNAC	3 cut(s)	259, 361, 511
HpyAV	CCTTC	1 cut(s)	986
HpyCH4III	ACNGT	4 cut(s)	53, 170, 365, 908
HpyCH4V	TGCA	5 cut(s)	356, 406, 532, 922, 985
HpyF3I	CTNAG	3 cut(s)	12, 146, 249
Hsp92II	CATG	8 cut(s)	298, 353, 403, 517, 666, 782, 812, 869
HspAI	GCGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	5 cut(s)	78, 310, 522, 538, 589
LmnI	GCTCC	3 cut(s)	628, 820, 888
Lsp1109I	GCAGC	4 cut(s)	503, 697, 700, 941
MaeI	CTAG	3 cut(s)	138, 648, 717
MaeIII	GTNAC	5 cut(s)	63, 299, 365, 908, 941
MalI	GATC	5 cut(s)	80, 312, 524, 540, 591
MboI	GATC	5 cut(s)	78, 310, 522, 538, 589
MboII	GAAGA	5 cut(s)	244, 473, 532, 619, 842
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	2 cut(s)	310, 589
MluCI	AATT	4 cut(s)	36, 119, 157, 639
MlyI	GAGTC	2 cut(s)	25, 949
MmeI	TCCRAC	1 cut(s)	880
MroXI	GAANNNNTTC	3 cut(s)	381, 849, 975
MseI	TTAA	3 cut(s)	35, 585, 753
MspR9I	CCNGG	1 cut(s)	966
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	966
NdeII	GATC	5 cut(s)	78, 310, 522, 538, 589
NlaIII	CATG	8 cut(s)	298, 353, 403, 517, 666, 782, 812, 869
NlaIV	GGNNCC	2 cut(s)	575, 884
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	4 cut(s)	63, 365, 908, 941
NspI	RCATGY	1 cut(s)	298
PciI	ACATGT	1 cut(s)	294
PdmI	GAANNNNTTC	3 cut(s)	381, 849, 975
PfeI	GAWTC	2 cut(s)	269, 316
PflFI	GACNNNGTC	1 cut(s)	861
PkrI	GCNGC	4 cut(s)	493, 712, 715, 931
PleI	GAGTC	2 cut(s)	24, 948
PpsI	GAGTC	2 cut(s)	24, 948
PscI	ACATGT	1 cut(s)	294
PshAI	GACNNNNGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	964
PspGI	CCWGG	1 cut(s)	964
PspN4I	GGNNCC	2 cut(s)	575, 884
PspPI	GGNCC	2 cut(s)	241, 437
PsrI	GAACNNNNNNTAC	2 cut(s)	284, 316
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	310, 589
PsyI	GACNNNGTC	1 cut(s)	861
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SalI	GTCGAC	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	35, 585, 753
SatI	GCNGC	4 cut(s)	492, 711, 714, 930
Sau3AI	GATC	5 cut(s)	78, 310, 522, 538, 589
Sau96I	GGNCC	2 cut(s)	241, 437
SchI	GAGTC	2 cut(s)	25, 949
ScrFI	CCNGG	1 cut(s)	966
SinI	GGWCC	2 cut(s)	241, 437
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
Sse9I	AATT	4 cut(s)	36, 119, 157, 639
SsiI	CCGC	3 cut(s)	87, 342, 623
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	3 cut(s)	138, 648, 717
StyD4I	CCNGG	1 cut(s)	964
TaaI	ACNGT	4 cut(s)	53, 170, 365, 908
TaqI	TCGA	5 cut(s)	19, 176, 497, 510, 774
TasI	AATT	4 cut(s)	36, 119, 157, 639
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	269, 316
Tru1I	TTAA	3 cut(s)	35, 585, 753
Tru9I	TTAA	3 cut(s)	35, 585, 753
TscAI	CASTG	5 cut(s)	271, 363, 370, 685, 1004
TseFI	GTSAC	4 cut(s)	63, 365, 908, 941
TseI	GCWGC	4 cut(s)	491, 710, 713, 929
Tsp45I	GTSAC	4 cut(s)	63, 365, 908, 941
TspDTI	ATGAA	4 cut(s)	338, 795, 797, 861
TspRI	CASTG	5 cut(s)	271, 363, 370, 685, 1004
Tth111I	GACNNNGTC	1 cut(s)	861
VpaK11BI	GGWCC	2 cut(s)	241, 437
XapI	RAATTY	2 cut(s)	157, 639
XceI	RCATGY	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	510
XmnI	GAANNNNTTC	3 cut(s)	381, 849, 975
XspI	CTAG	3 cut(s)	138, 648, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.