Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008844

Physical Location & Seq

Genomic Coordinates Reverse (-)

95406657 .. 95409680

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGTCGTCGACTTATAAGACAAGATCCTTTTGTTACTATCTCTTCTTGAAAAGGAAGTGGAAGAGGATGAAAGAATTTTACTCGGATAACTACCTAAATATATGTTTGCCTCATACAGTGTTCAAGGATACCGCAGTTCATGTTGCAGTGTACAGTGACAACGAAGAACTGGTGAAGTCTCTGCTTCACATGGTGTATAGAGAATACGCAGATTACTTTTTGGGAGGACCAGCAATATTTCAGAAACAGAATACATTTGGAAATACACCTCTTCACGAGGCAGCTTCGATAGGAAATGTCGACATGGTGAAGATCATAATGCAATATGATCCGAAGCAACTGAATACTAAAAACAAGAGAGGTGAAACACCCTTTTTTACGGCCGCCGTATATGGCAACACCAATGTGATCAGGCATTTGGCGGCAGAGATCAAGAAAGATGCTGTGGAGAATCATACCTCATCTCACGGCTCCACCATGCTTCATGAAGCTATTCGCGGCTATTACTTTGAAACAGCTCTGGAGTTAGTAAAACCAGAATACCACATACGGACAGATCGGAAGGATTCAGATGGCATAACCTGTTTTCAGCTGCTAGCTAACATTCCATCTGCTTTTGAGAGTGGATATTCCTTTGGCATATTGGAGAAACTGATCTATCTTTGCCTTCCGGTAGATGATTACAGCAAAAACAAGGACGAAACGAACAGTGTATCTCAGGTCCCTCCATCTCCAAATACAGATTTGGAGCGTGCAGGAGATCACAGCAAAGACAAGGATGGAAACAAAAATGTATCTCATGTCCCTCCAAGTCCAAACAAGATCACAGAAAAAATGTACGTCACCTTTTGGAGCATCATTGCTAAAGGGTTCCCATCTATTAAAGATCTGTGGGACACAAAGAAGAAGCACGGTATAGTGGTGGAGCTTTCAAAACTTTTGGCTGGAGGAGACAAGTCATGGCAGGTTAACAAAACTGATGGTCAAAATGACACTCCACTTCTGGCTGCTGCTAGGAATGGGATTATAGAAATCATTGAGGCCATTTTTAATCTGTTCCCACAGGCCATCGAGCATGAAAACCACAAAAGAGAGAACATATTTCATGTTGTTGTGGAGCATCGGAGGAGACAGCTTTTGGAATATCTTCTCCGAACTTGTCATGTTTCATATCCGAGGCTCCTGTGGAAAATCAATCAAGACGGTGACGGCATTTTGCATAAAGCAGCATATAAGAGTCACTATTCCTCAAGGGAGAGGCCAGGGAAGCCCTTCGCTTGCAGTCAGATATTCACTGGTTTGAGCGCAGCGAGTGAAGAAATTGGTGCCTCCACATCACATCAACCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

450

Amino Acids

51.25

Weight (kDa)

8.48

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	37 - 113	1.2e-07	Ankyrin repeats (3 copies)
Ank_4	PF13637	47 - 104	3.1e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	72 - 145	1.9e-10	Ankyrin repeats (3 copies)
Ank_2	PF12796	114 - 182	1.8e-06	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01320
rosa_chinensis	RchiOBHm_Chr5g0001861 RchiOBHm_Chr5g0001871 RchiOBHm_Chr5g0001931
rosa_laevigata	RLG00000030979 RLG00000030982 RLG00000030983
rosa_multiflora	Rmu_sc0000378.1_g000006 Rmu_sc0000378.1_g000016 Rmu_sc0006008.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071330 Rroxscaffold_1G00074400 Rroxscaffold_1G00074490
rosa_rugosa	Rorug04G0393600 Rorug04G0393600 Rorug04G0393900
rosa_samantha	Rh5AG014900 Rh5BG018300 Rh5CG016000 Rh5DG016400 Rh5DG016900
rosa_wichuraiana	Rw5G001440 Rw5G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	955
AccB1I	GGYRCC	1 cut(s)	1325
AccI	GTMKAC	2 cut(s)	8, 300
AccII	CGCG	1 cut(s)	498
AciI	CCGC	4 cut(s)	132, 384, 422, 498
AclWI	GGATC	2 cut(s)	18, 323
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	152, 839
AgsI	TTSAA	4 cut(s)	49, 124, 512, 933
AjnI	CCWGG	1 cut(s)	1261
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	7 cut(s)	284, 491, 518, 592, 599, 928, 1135
AluI	AGCT	7 cut(s)	284, 491, 518, 592, 599, 928, 1135
Alw26I	GTCTC	3 cut(s)	183, 945, 1123
AlwI	GGATC	2 cut(s)	18, 323
AoxI	GGCC	4 cut(s)	381, 1041, 1065, 1259
ApeKI	GCWGC	6 cut(s)	281, 592, 1007, 1010, 1226, 1307
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	3 cut(s)	492, 1146, 1271
AspLEI	GCGC	1 cut(s)	1307
AspS9I	GGNCC	2 cut(s)	227, 721
AsuHPI	GGTGA	5 cut(s)	184, 319, 374, 835, 1217
AsuNHI	GCTAGC	1 cut(s)	595
AvaII	GGWCC	2 cut(s)	227, 721
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BanI	GGYRCC	1 cut(s)	1325
BauI	CACGAG	1 cut(s)	275
BbvI	GCAGC	6 cut(s)	293, 579, 994, 997, 1238, 1319
BccI	CCATC	7 cut(s)	566, 616, 736, 773, 883, 974, 1076
BceAI	ACGGC	4 cut(s)	371, 396, 484, 1225
BciT130I	CCWGG	1 cut(s)	1263
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	183, 945, 1123
BfaI	CTAG	2 cut(s)	596, 1014
BfuAI	ACCTGC	1 cut(s)	955
BfuI	GTATCC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	886
BisI	GCNGC	9 cut(s)	282, 384, 423, 499, 593, 1008, 1011, 1227, 1308
BlsI	GCNGC	9 cut(s)	283, 385, 424, 500, 594, 1009, 1012, 1228, 1309
Bme1390I	CCNGG	1 cut(s)	1263
Bme18I	GGWCC	2 cut(s)	227, 721
BmgT120I	GGNCC	2 cut(s)	227, 721
BmiI	GGNNCC	5 cut(s)	472, 723, 872, 1181, 1327
BmrFI	CCNGG	1 cut(s)	1263
BmsI	GCATC	3 cut(s)	430, 864, 1129
BmtI	GCTAGC	1 cut(s)	599
BpmI	CTGGAG	2 cut(s)	542, 966
BpuEI	CTTGAG	1 cut(s)	1234
BsaJI	CCNNGG	2 cut(s)	1175, 1262
BsaWI	WCCGGW	1 cut(s)	670
Bse1I	ACTGG	2 cut(s)	174, 1300
Bse3DI	GCAATG	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	1263
BseDI	CCNNGG	2 cut(s)	1175, 1262
BseGI	GGATG	2 cut(s)	72, 784
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	2 cut(s)	174, 1300
BseRI	GAGGAG	2 cut(s)	963, 1141
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	6 cut(s)	293, 579, 994, 997, 1238, 1319
BsgI	GTGCAG	1 cut(s)	774
Bsh1236I	CGCG	1 cut(s)	498
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	4 cut(s)	383, 1043, 1067, 1261
BshNI	GGYRCC	1 cut(s)	1325
BsiEI	CGRYCG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	671
BslFI	GGGAC	3 cut(s)	707, 788, 908
BsmAI	GTCTC	3 cut(s)	183, 945, 1123
BsmFI	GGGAC	3 cut(s)	707, 788, 908
BsnI	GGCC	4 cut(s)	383, 1043, 1067, 1261
Bsp1407I	TGTACA	1 cut(s)	150
BspACI	CCGC	4 cut(s)	132, 384, 422, 498
BspANI	GGCC	4 cut(s)	383, 1043, 1067, 1261
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	498
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	5 cut(s)	472, 723, 872, 1181, 1327
BspMI	ACCTGC	1 cut(s)	955
BspOI	GCTAGC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	18, 323
BspT107I	GGYRCC	1 cut(s)	1325
BsrDI	GCAATG	1 cut(s)	858
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	174, 1300
BssECI	CCNNGG	2 cut(s)	1175, 1262
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	1263
Bst4CI	ACNGT	5 cut(s)	118, 155, 710, 914, 1205
Bst6I	CTCTTC	3 cut(s)	47, 56, 276
BstAUI	TGTACA	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	597, 753, 1279
BstDEI	CTNAG	1 cut(s)	717
BstF5I	GGATG	2 cut(s)	72, 784
BstFNI	CGCG	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	1307
BstMAI	GTCTC	3 cut(s)	183, 945, 1123
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	1267
BstNI	CCWGG	1 cut(s)	1263
BstSCI	CCNGG	1 cut(s)	1261
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	6 cut(s)	293, 579, 994, 997, 1238, 1319
BstX2I	RGATCY	2 cut(s)	23, 886
BstYI	RGATCY	2 cut(s)	23, 886
BstZI	CGGCCG	1 cut(s)	381
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	383, 1043, 1067, 1261
BtsCI	GGATG	2 cut(s)	72, 784
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	5 cut(s)	123, 153, 160, 715, 1293
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	3 cut(s)	597, 753, 1279
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	1307
Cfr13I	GGNCC	2 cut(s)	227, 721
Csp6I	GTAC	2 cut(s)	151, 838
CviQI	GTAC	2 cut(s)	151, 838
DdeI	CTNAG	1 cut(s)	717
DraIII	CACNNNGTG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	3 cut(s)	47, 56, 276
EarI	CTCTTC	3 cut(s)	47, 56, 276
EclXI	CGGCCG	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	227, 721
Eco52I	CGGCCG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRII	CCWGG	1 cut(s)	1261
FaqI	GGGAC	3 cut(s)	707, 788, 908
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	2 cut(s)	8, 300
Fnu4HI	GCNGC	9 cut(s)	282, 384, 423, 499, 593, 1008, 1011, 1227, 1308
FokI	GGATG	2 cut(s)	79, 791
Fsp4HI	GCNGC	9 cut(s)	282, 384, 423, 499, 593, 1008, 1011, 1227, 1308
FspBI	CTAG	2 cut(s)	596, 1014
GlaI	GCGC	1 cut(s)	1306
GluI	GCNGC	9 cut(s)	282, 384, 423, 499, 593, 1008, 1011, 1227, 1308
GsuI	CTGGAG	2 cut(s)	542, 966
HaeIII	GGCC	4 cut(s)	383, 1043, 1067, 1261
HapII	CCGG	1 cut(s)	671
HhaI	GCGC	1 cut(s)	1307
Hin6I	GCGC	1 cut(s)	1305
HinP1I	GCGC	1 cut(s)	1305
HincII	GTYRAC	3 cut(s)	9, 301, 970
HindII	GTYRAC	3 cut(s)	9, 301, 970
HinfI	GANTC	3 cut(s)	451, 566, 1237
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	5 cut(s)	184, 319, 374, 835, 1217
Hpy166II	GTNNAC	4 cut(s)	9, 151, 301, 970
Hpy188I	TCNGA	9 cut(s)	85, 243, 333, 561, 571, 1125, 1154, 1176, 1287
Hpy188III	TCNNGA	6 cut(s)	46, 275, 433, 485, 521, 1199
Hpy8I	GTNNAC	4 cut(s)	9, 151, 301, 970
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	556, 677, 1282
HpyCH4III	ACNGT	5 cut(s)	118, 155, 710, 914, 1205
HpyCH4IV	ACGT	1 cut(s)	840
HpyCH4V	TGCA	5 cut(s)	146, 322, 755, 1219, 1281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1267
HpyF3I	CTNAG	1 cut(s)	717
HpySE526I	ACGT	1 cut(s)	840
HspAI	GCGC	1 cut(s)	1305
Ksp22I	TGATCA	1 cut(s)	408
KspAI	GTTAAC	1 cut(s)	970
LmnI	GCTCC	6 cut(s)	476, 748, 852, 925, 1117, 1185
Lsp1109I	GCAGC	6 cut(s)	293, 579, 994, 997, 1238, 1319
LweI	GCATC	3 cut(s)	430, 864, 1129
MaeI	CTAG	2 cut(s)	596, 1014
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	5 cut(s)	32, 155, 841, 1205, 1238
MboII	GAAGA	8 cut(s)	34, 73, 176, 263, 322, 916, 1139, 1328
MflI	RGATCY	2 cut(s)	23, 886
MluCI	AATT	2 cut(s)	74, 1320
MlyI	GAGTC	1 cut(s)	1246
MroXI	GAANNNNTTC	3 cut(s)	492, 1146, 1271
MseI	TTAA	4 cut(s)	882, 969, 1050, 1351
MslI	CAYNNNNRTG	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	1263
MvaI	CCWGG	1 cut(s)	1263
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	1267
NheI	GCTAGC	1 cut(s)	595
NlaIV	GGNNCC	5 cut(s)	472, 723, 872, 1181, 1327
NmuCI	GTSAC	4 cut(s)	155, 841, 1205, 1238
OliI	CACNNNNGTG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	484
PdmI	GAANNNNTTC	3 cut(s)	492, 1146, 1271
PfeI	GAWTC	2 cut(s)	451, 566
PkrI	GCNGC	9 cut(s)	283, 385, 424, 500, 594, 1009, 1012, 1228, 1309
PleI	GAGTC	1 cut(s)	1245
PpsI	GAGTC	1 cut(s)	1245
PpuMI	RGGWCCY	1 cut(s)	721
PsiI	TTATAA	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	1 cut(s)	1261
PspGI	CCWGG	1 cut(s)	1261
PspN4I	GGNNCC	5 cut(s)	472, 723, 872, 1181, 1327
PspPI	GGNCC	2 cut(s)	227, 721
PspPPI	RGGWCCY	1 cut(s)	721
PsuI	RGATCY	2 cut(s)	23, 886
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	2 cut(s)	152, 839
RsaNI	GTAC	2 cut(s)	151, 838
RseI	CAYNNNNRTG	1 cut(s)	404
SalI	GTCGAC	2 cut(s)	7, 299
SaqAI	TTAA	4 cut(s)	882, 969, 1050, 1351
SatI	GCNGC	9 cut(s)	282, 384, 423, 499, 593, 1008, 1011, 1227, 1308
Sau96I	GGNCC	2 cut(s)	227, 721
SchI	GAGTC	1 cut(s)	1246
ScrFI	CCNGG	1 cut(s)	1263
SfaNI	GCATC	3 cut(s)	430, 864, 1129
SinI	GGWCC	2 cut(s)	227, 721
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	1249
SmoI	CTYRAG	1 cut(s)	1249
Sse9I	AATT	2 cut(s)	74, 1320
SsiI	CCGC	4 cut(s)	132, 384, 422, 498
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	2 cut(s)	596, 1014
StyD4I	CCNGG	1 cut(s)	1261
TaaI	ACNGT	5 cut(s)	118, 155, 710, 914, 1205
TaiI	ACGT	1 cut(s)	843
TaqI	TCGA	4 cut(s)	8, 287, 300, 1071
TasI	AATT	2 cut(s)	74, 1320
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	386, 425, 501
TfiI	GAWTC	2 cut(s)	451, 566
Tru1I	TTAA	4 cut(s)	882, 969, 1050, 1351
Tru9I	TTAA	4 cut(s)	882, 969, 1050, 1351
TscAI	CASTG	5 cut(s)	123, 153, 160, 715, 1300
TseFI	GTSAC	4 cut(s)	155, 841, 1205, 1238
TseI	GCWGC	6 cut(s)	281, 592, 1007, 1010, 1226, 1307
Tsp45I	GTSAC	4 cut(s)	155, 841, 1205, 1238
TspDTI	ATGAA	7 cut(s)	83, 128, 473, 501, 1092, 1094, 1158
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	5 cut(s)	123, 153, 160, 715, 1300
VpaK11BI	GGWCC	2 cut(s)	227, 721
XapI	RAATTY	1 cut(s)	74
XmiI	GTMKAC	2 cut(s)	8, 300
XmnI	GAANNNNTTC	3 cut(s)	492, 1146, 1271
XspI	CTAG	2 cut(s)	596, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.