Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008844

Physical Location & Seq

Genomic Coordinates Forward (+)

1244137 .. 1247477

Gene Structure 3341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGTGGATCTTTAATAATGCAGACACTGCTCTGGAATTATTAGACCCAAAATACTGCATTCCGAAGGGTTGGGTGGATAGAGATGGCATGACCTGCTTTCAGCTGCTAGCTGACATTCCCTCTGCTTTCAAGAGTGGATATTCGCCTGGCAAATGGGAGAAACTGAGCTATCACGGCCTTCCAGATCCAGAAGATAAGGATGAAAGTGAAAACAACAATGTATCTCAGGTCAAATCAGGTCGAAACACAGAGACAAAGCATGGAAATTCAAGCAAATACTTCAGGTGGATTTGGAGACCCATTGCTATAGTTGTGATGAATATTGGAATATGGCTAAAATACCCATCATTCCAAAATCTAGAAAACACGAAGAAGAAGCACGGCATAGCGGTGAAGCTTACCAAAATTCTGGCTAAAGATGATCAGTCATGGCAGGGTTATAATACTGCAGCTGGTGCTATGCCAAAAGACCATAATAATTCTACCGATGGTCTTCCTACGCCAAAAATTAATAACAATACTAATGATGGTCATCGTGACACTCCACTTATTGCAGCTGCAAAGAATGGGATCAAAGAGATTGTCGAGGCCATCTTGGATGTGTTCCCACAGGCCATCGAGCATGAAAACCACAAAGAAGAAAATGTATTTCATGTTGCTGTGCAGAATCGCAGGACAGAAGTCTTGGATCTTCTCAAATCTTATAAATTTGACTATTCGAGGATCAAATGGAAGTTCAATGCAGATGGTGAGGGTATTTTGCATAAAGCTGCATACAAGAGTGATATTTCCTCAAGGAAGAGGCCCGGGGAAGCCCTTTGCTTGCAGTCAGATATTCAATGGTTTGAGCTAGTGAGGAAAATGGTGCCTGGACATCATGCCAACCAACAAAATAAAAAGAAAGAAAAAGATACGCCTCAATCTTTGTTCACAAAAGAGCATAAAGAAATGGTAAAGAAAGGCCAAGAATGGTTGATCAGAACAACAAACTCATGCATTATAGTTGCAGTTCTTATTGCAACTGTTGCTTTTACAAGTATCTACACCGTGCCTGGCGGTTCTGATGCAAAGACAGGCAAGCCGTTGCTGCTCAACACAACTGCATTCACGGTCTTCACAGCATCTGATGTGGCATCTCTTTGTTTTGCTTTCACCTCAGTGGTGGTGTTTCTTTCCATCACTACGTCGAAAATGAATGAGCAAGATTTCCGGACGTCTCTGCCTTTAAAGCTTGTTTTGGGGTTAAGCATGCTGTTTTTTTCTGTGGCAGCATTGATGATTGGTTTTGCTGCTACTCTTGTCATGACAGTAAGGCACAGGCTACATCGGGCTGCTGCCCCCATCATTGCCATTGCTTGTTTTCCTGTCGCCTTTTTCATCCTTCTCCAGCTTCGTCTCTATACCAATATTACTTTGTTTACCATAAATGACTTGCTGCGCAGCCTCATTGATATTATTCCGAAAAAATGTCAGCCTCGATCATGGACTAGGTCCAGCTATGTCTTCTCGGATGAAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

507

Amino Acids

57.23

Weight (kDa)

9.1

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	172 - 239	1.5e-06	Ankyrin repeats (3 copies)
PGG	PF13962	323 - 435	6.7e-23	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01320
rosa_chinensis	RchiOBHm_Chr5g0001861 RchiOBHm_Chr5g0001871 RchiOBHm_Chr5g0001931
rosa_laevigata	RLG00000030979 RLG00000030982 RLG00000030983
rosa_multiflora	Rmu_sc0000378.1_g000006 Rmu_sc0000378.1_g000016 Rmu_sc0006008.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071330 Rroxscaffold_1G00074400 Rroxscaffold_1G00074490
rosa_rugosa	Rorug04G0393600 Rorug04G0393600 Rorug04G0393900
rosa_samantha	Rh5AG014900 Rh5BG018300 Rh5CG016000 Rh5DG016400 Rh5DG016900
rosa_wichuraiana	Rw5G001440 Rw5G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	441, 705
AatII	GACGTC	1 cut(s)	1217
Acc16I	TGCGCA	1 cut(s)	1439
Acc36I	ACCTGC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	865
AccIII	TCCGGA	1 cut(s)	1209
AciI	CCGC	2 cut(s)	389, 1056
AclWI	GGATC	5 cut(s)	14, 179, 578, 696, 731
AcsI	RAATTY	3 cut(s)	265, 405, 707
AcuI	CTGAAG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	1214
AgsI	TTSAA	4 cut(s)	130, 270, 739, 839
AjnI	CCWGG	3 cut(s)	145, 868, 1051
AleI	CACNNNNGTG	1 cut(s)	1157
Alw26I	GTCTC	4 cut(s)	245, 289, 1221, 1400
AlwI	GGATC	5 cut(s)	14, 179, 578, 696, 731
AlwNI	CAGNNNCTG	2 cut(s)	26, 1124
Ama87I	CYCGRG	1 cut(s)	806
Aor13HI	TCCGGA	1 cut(s)	1209
AoxI	GGCC	5 cut(s)	175, 588, 612, 803, 961
ApoI	RAATTY	3 cut(s)	265, 405, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
AseI	ATTAAT	1 cut(s)	510
AspLEI	GCGC	1 cut(s)	1440
AspS9I	GGNCC	2 cut(s)	804, 1491
AsuC2I	CCSGG	2 cut(s)	807, 808
AsuHPI	GGTGA	3 cut(s)	403, 761, 1144
AsuNHI	GCTAGC	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	1491
BanI	GGYRCC	1 cut(s)	865
BbsI	GAAGAC	3 cut(s)	485, 1105, 1495
BccI	CCATC	9 cut(s)	77, 352, 482, 521, 599, 623, 740, 1184, 1349
BceAI	ACGGC	3 cut(s)	190, 397, 1066
BciT130I	CCWGG	3 cut(s)	147, 870, 1053
BclI	TGATCA	2 cut(s)	421, 975
BcnI	CCSGG	2 cut(s)	807, 808
BcoDI	GTCTC	4 cut(s)	245, 289, 1221, 1400
BfaI	CTAG	4 cut(s)	107, 359, 851, 1488
BfmI	CTRYAG	2 cut(s)	306, 447
BfuAI	ACCTGC	1 cut(s)	101
Bme1390I	CCNGG	5 cut(s)	147, 807, 808, 870, 1053
Bme18I	GGWCC	1 cut(s)	1491
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	2 cut(s)	804, 1491
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	5 cut(s)	147, 807, 808, 870, 1053
BmsI	GCATC	3 cut(s)	1054, 1130, 1142
BmtI	GCTAGC	1 cut(s)	110
BoxI	GACNNNNGTC	1 cut(s)	680
BpiI	GAAGAC	3 cut(s)	485, 1105, 1495
BpmI	CTGGAG	1 cut(s)	1370
BpuEI	CTTGAG	1 cut(s)	778
BpuMI	CCSGG	2 cut(s)	807, 808
BsaBI	GATNNNNATC	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	1214
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	806, 807
BsaWI	WCCGGW	1 cut(s)	1209
Bse3DI	GCAATG	3 cut(s)	300, 1344, 1350
Bse8I	GATNNNNATC	1 cut(s)	531
BseAI	TCCGGA	1 cut(s)	1209
BseBI	CCWGG	3 cut(s)	147, 870, 1053
BseDI	CCNNGG	2 cut(s)	806, 807
BseGI	GGATG	4 cut(s)	205, 604, 1377, 1516
BseJI	GATNNNNATC	1 cut(s)	531
BseMI	GCAATG	3 cut(s)	300, 1344, 1350
BseMII	CTCAG	3 cut(s)	155, 239, 1170
BsgI	GTGCAG	1 cut(s)	683
BshFI	GGCC	5 cut(s)	177, 590, 614, 805, 963
BshNI	GGYRCC	1 cut(s)	865
BsiHKCI	CYCGRG	1 cut(s)	806
BsiSI	CCGG	2 cut(s)	807, 1210
BsmAI	GTCTC	4 cut(s)	245, 289, 1221, 1400
BsmBI	CGTCTC	2 cut(s)	1221, 1400
BsmI	GAATGC	2 cut(s)	57, 1103
BsnI	GGCC	5 cut(s)	177, 590, 614, 805, 963
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	806
Bsp13I	TCCGGA	1 cut(s)	1209
Bsp143I	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
BspACI	CCGC	2 cut(s)	389, 1056
BspANI	GGCC	5 cut(s)	177, 590, 614, 805, 963
BspCNI	CTCAG	3 cut(s)	156, 238, 1169
BspEI	TCCGGA	1 cut(s)	1209
BspHI	TCATGA	1 cut(s)	1302
BspLI	GGNNCC	1 cut(s)	867
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	101
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	5 cut(s)	14, 179, 578, 696, 731
BspT107I	GGYRCC	1 cut(s)	865
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	3 cut(s)	300, 1344, 1350
BssECI	CCNNGG	2 cut(s)	806, 807
BssMI	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
BssNI	GRCGYC	1 cut(s)	1214
Bst2UI	CCWGG	3 cut(s)	147, 870, 1053
Bst4CI	ACNGT	4 cut(s)	1024, 1048, 1111, 1309
Bst6I	CTCTTC	1 cut(s)	794
BstACI	GRCGYC	1 cut(s)	1214
BstAPI	GCANNNNNTGC	4 cut(s)	26, 93, 455, 1025
BstC8I	GCNNGC	4 cut(s)	108, 824, 1079, 1250
BstDEI	CTNAG	3 cut(s)	164, 225, 1156
BstF5I	GGATG	4 cut(s)	205, 604, 1377, 1516
BstHHI	GCGC	1 cut(s)	1440
BstKTI	GATC	8 cut(s)	9, 187, 424, 573, 691, 726, 978, 1481
BstMAI	GTCTC	4 cut(s)	245, 289, 1221, 1400
BstMBI	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 93, 174, 455, 1025, 1087, 1228
BstNI	CCWGG	3 cut(s)	147, 870, 1053
BstNSI	RCATGY	1 cut(s)	1252
BstPAI	GACNNNNGTC	1 cut(s)	680
BstSCI	CCNGG	5 cut(s)	145, 805, 806, 868, 1051
BstSFI	CTRYAG	2 cut(s)	306, 447
BstV2I	GAAGAC	3 cut(s)	485, 1105, 1495
BstX2I	RGATCY	3 cut(s)	6, 184, 688
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	3 cut(s)	6, 184, 688
BsuRI	GGCC	5 cut(s)	177, 590, 614, 805, 963
BtsCI	GGATG	4 cut(s)	205, 604, 1377, 1516
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 1164
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	4 cut(s)	108, 824, 1079, 1250
CaiI	CAGNNNCTG	2 cut(s)	26, 1124
CciI	TCATGA	1 cut(s)	1302
CfoI	GCGC	1 cut(s)	1440
Cfr13I	GGNCC	2 cut(s)	804, 1491
Cfr9I	CCCGGG	1 cut(s)	806
DdeI	CTNAG	3 cut(s)	164, 225, 1156
DpnI	GATC	8 cut(s)	8, 186, 423, 572, 690, 725, 977, 1480
DpnII	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
DraI	TTTAAA	1 cut(s)	1227
Eam1104I	CTCTTC	1 cut(s)	794
EarI	CTCTTC	1 cut(s)	794
Eco31I	GGTCTC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	1491
Eco57I	CTGAAG	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	806
EcoRII	CCWGG	3 cut(s)	145, 868, 1051
EcoT22I	ATGCAT	1 cut(s)	998
Esp3I	CGTCTC	2 cut(s)	1221, 1400
FbaI	TGATCA	2 cut(s)	421, 975
FokI	GGATG	3 cut(s)	212, 611, 1364
FspBI	CTAG	4 cut(s)	107, 359, 851, 1488
FspI	TGCGCA	1 cut(s)	1439
GlaI	GCGC	1 cut(s)	1439
GsuI	CTGGAG	1 cut(s)	1370
HaeIII	GGCC	5 cut(s)	177, 590, 614, 805, 963
HapII	CCGG	2 cut(s)	807, 1210
HhaI	GCGC	1 cut(s)	1440
Hin1I	GRCGYC	1 cut(s)	1214
Hin6I	GCGC	1 cut(s)	1438
HinP1I	GCGC	1 cut(s)	1438
HindIII	AAGCTT	2 cut(s)	395, 1229
HinfI	GANTC	1 cut(s)	667
HpaII	CCGG	2 cut(s)	807, 1210
HphI	GGTGA	3 cut(s)	403, 761, 1144
Hpy166II	GTNNAC	2 cut(s)	930, 1419
Hpy188I	TCNGA	7 cut(s)	63, 832, 980, 1063, 1126, 1461, 1510
Hpy188III	TCNNGA	8 cut(s)	32, 130, 182, 188, 359, 536, 1210, 1303
Hpy8I	GTNNAC	2 cut(s)	930, 1419
Hpy99I	CGWCG	1 cut(s)	1189
HpyAV	CCTTC	3 cut(s)	58, 188, 1391
HpyCH4III	ACNGT	4 cut(s)	1024, 1048, 1111, 1309
HpyCH4IV	ACGT	2 cut(s)	1184, 1214
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 93, 174, 455, 1025, 1087, 1228
HpyF3I	CTNAG	3 cut(s)	164, 225, 1156
HpySE526I	ACGT	2 cut(s)	1184, 1214
Hsp92I	GRCGYC	1 cut(s)	1214
HspAI	GCGC	1 cut(s)	1438
Kpn2I	TCCGGA	1 cut(s)	1209
Ksp22I	TGATCA	2 cut(s)	421, 975
Kzo9I	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
LweI	GCATC	3 cut(s)	1054, 1130, 1142
MaeI	CTAG	4 cut(s)	107, 359, 851, 1488
MaeII	ACGT	2 cut(s)	1184, 1214
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	8 cut(s)	8, 186, 423, 572, 690, 725, 977, 1480
MboI	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
MboII	GAAGA	9 cut(s)	203, 382, 385, 485, 650, 683, 811, 1105, 1495
MflI	RGATCY	3 cut(s)	6, 184, 688
MluCI	AATT	6 cut(s)	35, 265, 405, 478, 507, 707
Mph1103I	ATGCAT	1 cut(s)	998
MroI	TCCGGA	1 cut(s)	1209
MseI	TTAA	4 cut(s)	12, 510, 1226, 1244
MslI	CAYNNNNRTG	2 cut(s)	389, 1157
MspA1I	CMGCKG	3 cut(s)	103, 452, 557
MspI	CCGG	2 cut(s)	807, 1210
MspR9I	CCNGG	5 cut(s)	147, 807, 808, 870, 1053
Mva1269I	GAATGC	2 cut(s)	57, 1103
MvaI	CCWGG	3 cut(s)	147, 870, 1053
MwoI	GCNNNNNNNGC	7 cut(s)	26, 93, 174, 455, 1025, 1087, 1228
NciI	CCSGG	2 cut(s)	807, 808
NdeII	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
NheI	GCTAGC	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	867
NmuCI	GTSAC	1 cut(s)	536
NsbI	TGCGCA	1 cut(s)	1439
NsiI	ATGCAT	1 cut(s)	998
NspI	RCATGY	1 cut(s)	1252
OliI	CACNNNNGTG	1 cut(s)	1157
PaeI	GCATGC	1 cut(s)	1252
PagI	TCATGA	1 cut(s)	1302
PctI	GAATGC	2 cut(s)	57, 1103
PfeI	GAWTC	1 cut(s)	667
PflFI	GACNNNGTC	1 cut(s)	1489
PshAI	GACNNNNGTC	1 cut(s)	680
PshBI	ATTAAT	1 cut(s)	510
PsiI	TTATAA	2 cut(s)	441, 705
Psp6I	CCWGG	3 cut(s)	145, 868, 1051
PspGI	CCWGG	3 cut(s)	145, 868, 1051
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	2 cut(s)	804, 1491
PstI	CTGCAG	1 cut(s)	451
PstNI	CAGNNNCTG	2 cut(s)	26, 1124
PsuI	RGATCY	3 cut(s)	6, 184, 688
PsyI	GACNNNGTC	1 cut(s)	1489
PvuII	CAGCTG	3 cut(s)	103, 452, 557
RseI	CAYNNNNRTG	2 cut(s)	389, 1157
SaqAI	TTAA	4 cut(s)	12, 510, 1226, 1244
Sau3AI	GATC	8 cut(s)	6, 184, 421, 570, 688, 723, 975, 1478
Sau96I	GGNCC	2 cut(s)	804, 1491
ScrFI	CCNGG	5 cut(s)	147, 807, 808, 870, 1053
SfaNI	GCATC	3 cut(s)	1054, 1130, 1142
SfcI	CTRYAG	2 cut(s)	306, 447
SinI	GGWCC	1 cut(s)	1491
SmaI	CCCGGG	1 cut(s)	808
SmiMI	CAYNNNNRTG	2 cut(s)	389, 1157
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
SphI	GCATGC	1 cut(s)	1252
Sse9I	AATT	6 cut(s)	35, 265, 405, 478, 507, 707
SsiI	CCGC	2 cut(s)	389, 1056
SspI	AATATT	2 cut(s)	322, 1408
SspMI	CTAG	4 cut(s)	107, 359, 851, 1488
StyD4I	CCNGG	5 cut(s)	145, 805, 806, 868, 1051
TaaI	ACNGT	4 cut(s)	1024, 1048, 1111, 1309
TaiI	ACGT	2 cut(s)	1187, 1217
TaqI	TCGA	6 cut(s)	241, 585, 618, 719, 1187, 1477
TasI	AATT	6 cut(s)	35, 265, 405, 478, 507, 707
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	4 cut(s)	12, 510, 1226, 1244
Tru9I	TTAA	4 cut(s)	12, 510, 1226, 1244
TscAI	CASTG	2 cut(s)	31, 1164
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	6 cut(s)	216, 332, 639, 641, 1208, 1366
TspMI	CCCGGG	1 cut(s)	806
TspRI	CASTG	2 cut(s)	31, 1164
Tth111I	GACNNNGTC	1 cut(s)	1489
VpaK11BI	GGWCC	1 cut(s)	1491
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	3 cut(s)	265, 405, 707
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	1252
XmaI	CCCGGG	1 cut(s)	806
XspI	CTAG	4 cut(s)	107, 359, 851, 1488
ZraI	GACGTC	1 cut(s)	1215
Zsp2I	ATGCAT	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.