Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008844

Physical Location & Seq

Genomic Coordinates Forward (+)

92187184 .. 92190279

Gene Structure 3096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGAGCGAGTTTTACTCGTGTAACTACATAAATATAAGTTTGTCTCACACATTGTTCAAGGATACCGCAGTTCATGTTGCAGTGTACAGTCGAAACACACAACTGGTGCAGACTCTGCTTCAGATGGTGTATAAAGATTACGAAGATTACTTTTTGGGAGGACCAGCAGCAATATTTCAGAAACAGAATGCATTTGGAAATACACCACTTCACGAGGCAGCTTCGATAGGAGATGTCGACATGGTGAAGATCATAATGGGATACGATCGGAAGCAACTGACTATTAAAAACGAAAAAGGTGAAACACCTATTTTTATGGCCGCAGTCTATGGCAAGACCAATGTGATCAAGCATTTGGTGACAGAAGTTGAGAACGACTATGACTGTCATATCTTGTCTGAGGCCTCCTCCATGCTTCATGAAGCTATTCGCGGCTATTACTTTGGCGATCACAGCAAAGACAAGGATAGAAACAAAAATGTATCTCAATTCCCTCCGAGTCTAAACACCGCCCTCCAGAAGATCACAGCAAAAATATACGTCAACCTTTGGAGCATCATTGCTGAAGGGATCCCATTTATTAAACATCTGTGGGACGAAAAGAAGAAGCACGACATAGTGGTTGAGCTTTCAAAATTTCTGGCTGGAGGAGACAAGTCATGGCAGGATAACAACACTGATGGTCAAAAGGACACTCCACTTCTGGCTGCTGCTAGGAATGGGATCATAGAAATCATCAAGGCCATTTTGAATCTGTTCCCACAGGCCATCGAGCATGAAAACCACAAGGGAGAGAACATATTTCATGTTGTTGTGGAGCATCGGAGGAGAAAGCTTTTGGAATATCTCCAAACTTTTCATGTTTCAGATTCGAGGCTCCTGTGGAAAATCAATCAAGACGGTGATGACATTTTGCATAAAGCAGCATATAAGAGTGAATATTCCTCAAGGGAGAGGCCAGGGGAAGCTCTTCGCTTGCAGTCGGATATTAACTGGTTTGAGGCTTTGTTTACAAAAGAGCATGAAGACCTGGTGATGAAAGGCCAAGAATGGTTAATCAGAACAACAAACTCTTGCATTATAGTTGCAGTTCTTATTGCAACGGTTGCTTTTACAAGCATCTACACCGTGCCTGGAGGTTCAGATCCAAAGACAGGCAAGCCCTTGCTCCTAAGCAAAACCCCATTCACTGTCTTCACAGCATCTGATGTGGTATCCCTTTGTTTTGCCTTCACCTCCGTGGTGGTGTTTCTTTCCATAAGCACGTCGAAAATGAATGAGAAAGATTTCCGGAGGGCTCTGCCATTGAAGCTTGTTTTGGGGCTAAGCATGCTGTTTTGGTCTGTGGCAGCGTTGATGGTTGGTTTCGCTGCAACTCTTGACATTACAATAAATCAGAGACTGCATCAGGCTACTGCTCCGATCATTACCATTGCTTGTTTTCCAGTTGCCTTCTTCCTCCTTCTGCAGCTTCCTCTCTATTTCAATATTACTTGGTTTACCATAAAGGACTTGCTGCAAAGCCTAATTGATTGTATTCCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

515

Amino Acids

58.34

Weight (kDa)

6.63

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	17 - 88	1.8e-06	Ankyrin repeats (3 copies)
Ank_4	PF13637	25 - 83	2.7e-06	Ankyrin repeats (many copies)
Ank_2	PF12796	70 - 144	4.4e-07	Ankyrin repeats (3 copies)
PGG	PF13962	350 - 460	1e-23	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01320
rosa_chinensis	RchiOBHm_Chr5g0001861 RchiOBHm_Chr5g0001871 RchiOBHm_Chr5g0001931
rosa_laevigata	RLG00000030979 RLG00000030982 RLG00000030983
rosa_multiflora	Rmu_sc0000378.1_g000006 Rmu_sc0000378.1_g000016 Rmu_sc0006008.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071330 Rroxscaffold_1G00074400 Rroxscaffold_1G00074490
rosa_rugosa	Rorug04G0393600 Rorug04G0393600 Rorug04G0393900
rosa_samantha	Rh5AG014900 Rh5BG018300 Rh5CG016000 Rh5DG016400 Rh5DG016900
rosa_wichuraiana	Rw5G001440 Rw5G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	1290
AciI	CCGC	4 cut(s)	66, 321, 432, 510
AclWI	GGATC	4 cut(s)	565, 578, 731, 1139
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	2 cut(s)	104, 585
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	1154
AgsI	TTSAA	5 cut(s)	58, 633, 751, 1309, 1486
AjiI	CACGTC	1 cut(s)	1266
AjnI	CCWGG	3 cut(s)	958, 1029, 1132
AjuI	GAANNNNNNNTTGG	2 cut(s)	1301, 1333
AleI	CACNNNNGTG	1 cut(s)	1238
AluBI	AGCT	7 cut(s)	221, 425, 628, 835, 968, 1312, 1471
AluI	AGCT	7 cut(s)	221, 425, 628, 835, 968, 1312, 1471
Alw26I	GTCTC	3 cut(s)	48, 645, 1393
AlwI	GGATC	4 cut(s)	565, 578, 731, 1139
AlwNI	CAGNNNCTG	3 cut(s)	115, 1205, 1402
Aor13HI	TCCGGA	1 cut(s)	1290
AoxI	GGCC	6 cut(s)	318, 402, 741, 765, 956, 1042
ApeKI	GCWGC	9 cut(s)	167, 218, 707, 710, 923, 1349, 1370, 1468, 1516
ApoI	RAATTY	1 cut(s)	635
Asp700I	GAANNNNTTC	4 cut(s)	426, 755, 969, 1286
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	6 cut(s)	256, 311, 370, 914, 1045, 1225
AvaII	GGWCC	1 cut(s)	161
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BamHI	GGATCC	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	1300
BauI	CACGAG	2 cut(s)	16, 212
BbsI	GAAGAC	2 cut(s)	1032, 1186
BbvI	GCAGC	9 cut(s)	179, 230, 694, 697, 935, 1357, 1361, 1480, 1503
BccI	CCATC	4 cut(s)	118, 674, 776, 1351
BciT130I	CCWGG	3 cut(s)	960, 1031, 1134
BciVI	GTATCC	3 cut(s)	55, 254, 1225
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	48, 645, 1393
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	1466
BfuI	GTATCC	3 cut(s)	55, 254, 1225
BlpI	GCTNAGC	1 cut(s)	1325
Bme1390I	CCNGG	3 cut(s)	960, 1031, 1134
Bme18I	GGWCC	1 cut(s)	161
BmgBI	CACGTC	1 cut(s)	1266
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	572, 878
BmrFI	CCNGG	3 cut(s)	960, 1031, 1134
BmsI	GCATC	5 cut(s)	564, 829, 1128, 1211, 1414
BpiI	GAAGAC	2 cut(s)	1032, 1186
BplI	GAGNNNNNCTC	3 cut(s)	31, 392, 424
BpmI	CTGGAG	3 cut(s)	500, 666, 1155
Bpu10I	CCTNAGC	1 cut(s)	1172
Bpu1102I	GCTNAGC	1 cut(s)	1325
BpuEI	CTTGAG	1 cut(s)	931
BsaJI	CCNNGG	2 cut(s)	959, 1239
BsaWI	WCCGGW	1 cut(s)	1290
Bsc4I	CCNNNNNNNGG	1 cut(s)	1154
Bse1I	ACTGG	3 cut(s)	108, 998, 1445
Bse3DI	GCAATG	2 cut(s)	558, 1431
BseAI	TCCGGA	1 cut(s)	1290
BseBI	CCWGG	3 cut(s)	960, 1031, 1134
BseDI	CCNNGG	2 cut(s)	959, 1239
BseLI	CCNNNNNNNGG	1 cut(s)	1154
BseMI	GCAATG	2 cut(s)	558, 1431
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	3 cut(s)	108, 998, 1445
BseRI	GAGGAG	3 cut(s)	397, 663, 841
BseXI	GCAGC	9 cut(s)	179, 230, 694, 697, 935, 1357, 1361, 1480, 1503
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	6 cut(s)	320, 404, 743, 767, 958, 1044
BsiEI	CGRYCG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	1291
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	1 cut(s)	1154
BsmAI	GTCTC	3 cut(s)	48, 645, 1393
BsmFI	GGGAC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	6 cut(s)	320, 404, 743, 767, 958, 1044
Bsp1286I	GDGCHC	1 cut(s)	1300
Bsp13I	TCCGGA	1 cut(s)	1290
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
Bsp1720I	GCTNAGC	1 cut(s)	1325
BspACI	CCGC	4 cut(s)	66, 321, 432, 510
BspANI	GGCC	6 cut(s)	320, 404, 743, 767, 958, 1044
BspCNI	CTCAG	1 cut(s)	391
BspEI	TCCGGA	1 cut(s)	1290
BspFNI	CGCG	1 cut(s)	432
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	572, 878
BspMAI	CTGCAG	1 cut(s)	1470
BspPI	GGATC	4 cut(s)	565, 578, 731, 1139
BspQI	GCTCTTC	1 cut(s)	975
BsrDI	GCAATG	2 cut(s)	558, 1431
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	3 cut(s)	108, 998, 1445
BssECI	CCNNGG	2 cut(s)	959, 1239
BssMI	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
BssSI	CACGAG	2 cut(s)	16, 212
Bst2BI	CACGAG	2 cut(s)	16, 212
Bst2UI	CCWGG	3 cut(s)	960, 1031, 1134
Bst4CI	ACNGT	6 cut(s)	89, 386, 902, 1105, 1129, 1192
Bst6I	CTCTTC	1 cut(s)	975
BstAPI	GCANNNNNTGC	2 cut(s)	115, 1106
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	977, 1160, 1331
BstDEI	CTNAG	3 cut(s)	399, 1172, 1325
BstDSI	CCRYGG	1 cut(s)	1239
BstFNI	CGCG	1 cut(s)	432
BstKTI	GATC	9 cut(s)	252, 268, 348, 451, 525, 573, 726, 1147, 1425
BstMAI	GTCTC	3 cut(s)	48, 645, 1393
BstMBI	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 453, 1106, 1309, 1330
BstNI	CCWGG	3 cut(s)	960, 1031, 1134
BstNSI	RCATGY	1 cut(s)	1333
BstSCI	CCNGG	3 cut(s)	958, 1029, 1132
BstSFI	CTRYAG	1 cut(s)	1466
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	9 cut(s)	179, 230, 694, 697, 935, 1357, 1361, 1480, 1503
BstV2I	GAAGAC	2 cut(s)	1032, 1186
BstX2I	RGATCY	2 cut(s)	570, 1144
BstYI	RGATCY	2 cut(s)	570, 1144
BsuI	GTATCC	3 cut(s)	55, 254, 1225
BsuRI	GGCC	6 cut(s)	320, 404, 743, 767, 958, 1044
BtgI	CCRYGG	1 cut(s)	1239
BtrI	CACGTC	1 cut(s)	1266
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	3 cut(s)	87, 675, 1188
Cac8I	GCNNGC	3 cut(s)	977, 1160, 1331
CaiI	CAGNNNCTG	3 cut(s)	115, 1205, 1402
CciI	TCATGA	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	161
CsiI	ACCWGGT	1 cut(s)	1029
Csp6I	GTAC	1 cut(s)	85
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	399, 1172, 1325
DpnI	GATC	9 cut(s)	251, 267, 347, 450, 524, 572, 725, 1146, 1424
DpnII	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	975
EarI	CTCTTC	1 cut(s)	975
Eco147I	AGGCCT	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	1300
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	104, 585
EcoRII	CCWGG	3 cut(s)	958, 1029, 1132
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	1300
FaqI	GGGAC	1 cut(s)	608
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	1300
FspBI	CTAG	1 cut(s)	714
GsuI	CTGGAG	3 cut(s)	500, 666, 1155
HaeIII	GGCC	6 cut(s)	320, 404, 743, 767, 958, 1044
HapII	CCGG	1 cut(s)	1291
HincII	GTYRAC	2 cut(s)	238, 544
HindII	GTYRAC	2 cut(s)	238, 544
HindIII	AAGCTT	2 cut(s)	833, 1310
HinfI	GANTC	4 cut(s)	112, 499, 751, 869
HpaII	CCGG	1 cut(s)	1291
HphI	GGTGA	6 cut(s)	256, 311, 370, 914, 1045, 1225
Hpy166II	GTNNAC	5 cut(s)	85, 238, 544, 1011, 1500
Hpy188III	TCNNGA	6 cut(s)	212, 419, 517, 896, 1291, 1379
Hpy8I	GTNNAC	5 cut(s)	85, 238, 544, 1011, 1500
Hpy99I	CGWCG	1 cut(s)	1270
HpyAV	CCTTC	4 cut(s)	560, 1240, 1462, 1472
HpyCH4III	ACNGT	6 cut(s)	89, 386, 902, 1105, 1129, 1192
HpyCH4IV	ACGT	2 cut(s)	540, 1265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 453, 1106, 1309, 1330
HpyF3I	CTNAG	3 cut(s)	399, 1172, 1325
HpySE526I	ACGT	2 cut(s)	540, 1265
Kpn2I	TCCGGA	1 cut(s)	1290
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	5 cut(s)	552, 817, 882, 1173, 1423
Lsp1109I	GCAGC	9 cut(s)	179, 230, 694, 697, 935, 1357, 1361, 1480, 1503
LweI	GCATC	5 cut(s)	564, 829, 1128, 1211, 1414
MabI	ACCWGGT	1 cut(s)	1029
MaeI	CTAG	1 cut(s)	714
MaeII	ACGT	2 cut(s)	540, 1265
MaeIII	GTNAC	2 cut(s)	20, 358
MalI	GATC	9 cut(s)	251, 267, 347, 450, 524, 572, 725, 1146, 1424
MboI	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
MboII	GAAGA	8 cut(s)	155, 259, 532, 616, 962, 1037, 1186, 1447
MflI	RGATCY	2 cut(s)	570, 1144
MhlI	GDGCHC	1 cut(s)	1300
MluCI	AATT	3 cut(s)	488, 635, 1527
MlyI	GAGTC	2 cut(s)	106, 508
MmeI	TCCRAC	1 cut(s)	963
Mph1103I	ATGCAT	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	1290
MroXI	GAANNNNTTC	4 cut(s)	426, 755, 969, 1286
MseI	TTAA	4 cut(s)	285, 582, 990, 1055
MslI	CAYNNNNRTG	1 cut(s)	1238
MspI	CCGG	1 cut(s)	1291
MspR9I	CCNGG	3 cut(s)	960, 1031, 1134
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	3 cut(s)	960, 1031, 1134
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	115, 453, 1106, 1309, 1330
NdeII	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
NlaIV	GGNNCC	2 cut(s)	572, 878
NmuCI	GTSAC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	1333
OliI	CACNNNNGTG	1 cut(s)	1238
PaeI	GCATGC	1 cut(s)	1333
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	975
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	4 cut(s)	426, 755, 969, 1286
PfeI	GAWTC	2 cut(s)	751, 869
Ple19I	CGATCG	1 cut(s)	268
PleI	GAGTC	2 cut(s)	106, 507
PpsI	GAGTC	2 cut(s)	106, 507
Psp6I	CCWGG	3 cut(s)	958, 1029, 1132
PspGI	CCWGG	3 cut(s)	958, 1029, 1132
PspN4I	GGNNCC	2 cut(s)	572, 878
PspPI	GGNCC	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	1470
PstNI	CAGNNNCTG	3 cut(s)	115, 1205, 1402
PsuI	RGATCY	2 cut(s)	570, 1144
PvuI	CGATCG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	1238
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	4 cut(s)	285, 582, 990, 1055
Sau3AI	GATC	9 cut(s)	249, 265, 345, 448, 522, 570, 723, 1144, 1422
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	2 cut(s)	106, 508
ScrFI	CCNGG	3 cut(s)	960, 1031, 1134
SduI	GDGCHC	1 cut(s)	1300
SexAI	ACCWGGT	1 cut(s)	1029
SfaNI	GCATC	5 cut(s)	564, 829, 1128, 1211, 1414
SfcI	CTRYAG	1 cut(s)	1466
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	1238
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
SphI	GCATGC	1 cut(s)	1333
Sse9I	AATT	3 cut(s)	488, 635, 1527
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	4 cut(s)	66, 321, 432, 510
SspI	AATATT	3 cut(s)	174, 941, 1489
SspMI	CTAG	1 cut(s)	714
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	958, 1029, 1132
TaaI	ACNGT	6 cut(s)	89, 386, 902, 1105, 1129, 1192
TaiI	ACGT	2 cut(s)	543, 1268
TaqI	TCGA	6 cut(s)	91, 224, 237, 771, 872, 1268
TasI	AATT	3 cut(s)	488, 635, 1527
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	323, 435
TfiI	GAWTC	2 cut(s)	751, 869
Tru1I	TTAA	4 cut(s)	285, 582, 990, 1055
Tru9I	TTAA	4 cut(s)	285, 582, 990, 1055
TscAI	CASTG	3 cut(s)	87, 682, 1195
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	9 cut(s)	167, 218, 707, 710, 923, 1349, 1370, 1468, 1516
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	9 cut(s)	62, 407, 435, 792, 794, 848, 1038, 1052, 1289
TspGWI	ACGGA	1 cut(s)	1228
TspRI	CASTG	3 cut(s)	87, 682, 1195
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	1333
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	4 cut(s)	426, 755, 969, 1286
XspI	CTAG	1 cut(s)	714
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.