Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000378.1

Orthogroup ID

OG0008844

Physical Location & Seq

Genomic Coordinates Forward (+)

68378 .. 70516

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000378.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atgtccacttataagacaagatccctttgttaccatctcttcatgaaaagaaagtgggagaggttgaacgaattttactcggataacttcctaaatatatgtttgccttttacagtgttccaggataccgcaattcatgttgcagtgtacagtaacaacaaagaactggtggagtctctgcttaagaaagtgtatggagatgatctcagagattactttttcggagggccaggaacatttctgaaacagaatgcatttggaaatacacctcttcacgaggcagcttcgataggaaatgtcgacatggtgaagatcataatgcaatatgatcggaagcaactgaatactaaaaacgagagaggtgaaacacccttttttactgccgcagtatatggcaataccaatgtgatcaagcatttggcgtcggagatcaaggaagacgatgagaggctatatcacacctcatctcccggctccaccgtgcttcatgaagctattcgcggctattactttgaaacagctttggagttagtaaaaccagaataccacatacagaaagatcagaaggattcagatcacatgacctgttttcagctgctagctaacattccatctgcttttgagagtggatattcctttggcatattggagaaactgatctatctttgccttccggtagatgattatagcaaaaacaaggacgacaacagtgtatctcaggtccctccaactccaaatacagattcggagcgtggcgatcacaacaaagtcaaggatggaaacaaaaatgtatctcatttccctcgaagtccaaacacagccttacggaagatcacagcaaaaatgtacgtcatcctttggagcatcattgctaaagggttcccatctattaaagatctgtgggacacaaagaagaagcacggcatagtggtggagctttcaaaaattctggctggaggagacaagtcatggcaggataacaacactgatggtcaaaaggacactccagttctggctgctgctaggaatgggattatagaaatcattgaggccatttttaatctgttcccgcaggccatcgagcatgaaaaccacaaaagagagaacatatttcatgttgttgtggagcatcggaggagacagcttttggaatatcttctccgtacttgtcatgtttcatatccgaggctcctgtataaaatcaatcaagacggtgacggtattttgcataaagcagcatataagagccactattcctcaagggagaggccaggggaagcccttcgcttgcagtcagatattcagtggtttgagcgagtgaagcaattggtgcctctacatcacatcaaccatcttaatcatcatgacaatttgacaccacatgctttgttcacaaaagagcataaagaactggtgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

473

Amino Acids

54.61

Weight (kDa)

8.09

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01320
rosa_chinensis	RchiOBHm_Chr5g0001861 RchiOBHm_Chr5g0001871 RchiOBHm_Chr5g0001931
rosa_laevigata	RLG00000030979 RLG00000030982 RLG00000030983
rosa_multiflora	Rmu_sc0000378.1_g000006 Rmu_sc0000378.1_g000016 Rmu_sc0006008.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071330 Rroxscaffold_1G00074400 Rroxscaffold_1G00074490
rosa_rugosa	Rorug04G0393600 Rorug04G0393600 Rorug04G0393900
rosa_samantha	Rh5AG014900 Rh5BG018300 Rh5CG016000 Rh5DG016400 Rh5DG016900
rosa_wichuraiana	Rw5G001440 Rw5G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	1330
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	501
AciI	CCGC	4 cut(s)	129, 384, 501, 1070
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	71, 945
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	3 cut(s)	149, 848, 1165
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	67, 515, 942
AjnI	CCWGG	3 cut(s)	120, 229, 1270
AjuI	GAANNNNNNNTTGG	2 cut(s)	727, 759
AluBI	AGCT	7 cut(s)	284, 494, 521, 595, 602, 937, 1144
AluI	AGCT	7 cut(s)	284, 494, 521, 595, 602, 937, 1144
Alw26I	GTCTC	3 cut(s)	180, 954, 1132
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	4 cut(s)	227, 1050, 1074, 1268
ApeKI	GCWGC	5 cut(s)	281, 595, 1016, 1019, 1235
ApoI	RAATTY	2 cut(s)	71, 945
Asp700I	GAANNNNTTC	3 cut(s)	495, 1155, 1281
AspS9I	GGNCC	2 cut(s)	227, 721
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	3 cut(s)	319, 374, 1226
AsuNHI	GCTAGC	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	1330
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	5 cut(s)	293, 582, 1003, 1006, 1247
BccI	CCATC	7 cut(s)	42, 619, 770, 892, 983, 1085, 1359
BceAI	ACGGC	1 cut(s)	937
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	3 cut(s)	122, 231, 1272
BciVI	GTATCC	1 cut(s)	118
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	3 cut(s)	180, 954, 1132
BfaI	CTAG	2 cut(s)	599, 1023
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	7 cut(s)	282, 384, 502, 596, 1017, 1020, 1236
BlsI	GCNGC	7 cut(s)	283, 385, 503, 597, 1018, 1021, 1237
Bme1390I	CCNGG	4 cut(s)	122, 231, 471, 1272
Bme18I	GGWCC	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	227, 721
BmiI	GGNNCC	5 cut(s)	475, 723, 881, 1190, 1332
BmrFI	CCNGG	4 cut(s)	122, 231, 471, 1272
BmsI	GCATC	2 cut(s)	873, 1138
BmtI	GCTAGC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	2 cut(s)	975, 990
BpuEI	CTTGAG	1 cut(s)	1243
BpuMI	CCSGG	1 cut(s)	471
BsaBI	GATNNNNATC	1 cut(s)	573
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	1184, 1271
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bse1I	ACTGG	3 cut(s)	171, 1007, 1416
Bse3DI	GCAATG	1 cut(s)	867
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	3 cut(s)	122, 231, 1272
BseDI	CCNNGG	2 cut(s)	1184, 1271
BseGI	GGATG	2 cut(s)	781, 852
BseJI	GATNNNNATC	1 cut(s)	573
BseMI	GCAATG	1 cut(s)	867
BseMII	CTCAG	2 cut(s)	220, 731
BseNI	ACTGG	3 cut(s)	171, 1007, 1416
BseRI	GAGGAG	2 cut(s)	972, 1150
BseXI	GCAGC	5 cut(s)	293, 582, 1003, 1006, 1247
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	4 cut(s)	229, 1052, 1076, 1270
BshNI	GGYRCC	1 cut(s)	1330
BsiSI	CCGG	2 cut(s)	471, 674
BslFI	GGGAC	2 cut(s)	707, 917
BsmAI	GTCTC	3 cut(s)	180, 954, 1132
BsmFI	GGGAC	2 cut(s)	707, 917
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	4 cut(s)	229, 1052, 1076, 1270
Bsp1407I	TGTACA	1 cut(s)	147
BspACI	CCGC	4 cut(s)	129, 384, 501, 1070
BspANI	GGCC	4 cut(s)	229, 1052, 1076, 1270
BspCNI	CTCAG	2 cut(s)	219, 730
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	3 cut(s)	42, 487, 1363
BspLI	GGNNCC	5 cut(s)	475, 723, 881, 1190, 1332
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	1330
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	867
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	3 cut(s)	171, 1007, 1416
BssECI	CCNNGG	2 cut(s)	1184, 1271
BssNI	GRCGYC	1 cut(s)	422
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	3 cut(s)	122, 231, 1272
Bst4CI	ACNGT	6 cut(s)	115, 152, 481, 710, 1214, 1220
Bst6I	CTCTTC	2 cut(s)	44, 276
BstACI	GRCGYC	1 cut(s)	422
BstAFI	CTTAAG	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	1330
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	600, 1074, 1289
BstDEI	CTNAG	2 cut(s)	206, 717
BstF5I	GGATG	2 cut(s)	781, 852
BstFNI	CGCG	1 cut(s)	501
BstMAI	GTCTC	3 cut(s)	180, 954, 1132
BstMWI	GCNNNNNNNGC	2 cut(s)	1321, 1330
BstNI	CCWGG	3 cut(s)	122, 231, 1272
BstNSI	RCATGY	1 cut(s)	1385
BstSCI	CCNGG	4 cut(s)	120, 229, 469, 1270
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	5 cut(s)	293, 582, 1003, 1006, 1247
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	2 cut(s)	20, 895
BstYI	RGATCY	2 cut(s)	20, 895
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	4 cut(s)	229, 1052, 1076, 1270
BtsCI	GGATG	2 cut(s)	781, 852
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	5 cut(s)	120, 150, 715, 984, 1310
Cac8I	GCNNGC	3 cut(s)	600, 1074, 1289
CciI	TCATGA	3 cut(s)	42, 487, 1363
Cfr13I	GGNCC	2 cut(s)	227, 721
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	148, 847, 1164
CspCI	CAANNNNNGTGG	2 cut(s)	1368, 1403
CviQI	GTAC	3 cut(s)	148, 847, 1164
DdeI	CTNAG	2 cut(s)	206, 717
Eam1104I	CTCTTC	2 cut(s)	44, 276
EarI	CTCTTC	2 cut(s)	44, 276
Eco47I	GGWCC	1 cut(s)	721
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRII	CCWGG	3 cut(s)	120, 229, 1270
EcoT22I	ATGCAT	1 cut(s)	256
FaqI	GGGAC	2 cut(s)	707, 917
FauI	CCCGC	1 cut(s)	1077
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	7 cut(s)	282, 384, 502, 596, 1017, 1020, 1236
FokI	GGATG	2 cut(s)	788, 839
Fsp4HI	GCNGC	7 cut(s)	282, 384, 502, 596, 1017, 1020, 1236
FspBI	CTAG	2 cut(s)	599, 1023
GluI	GCNGC	7 cut(s)	282, 384, 502, 596, 1017, 1020, 1236
GsuI	CTGGAG	2 cut(s)	975, 990
HaeIII	GGCC	4 cut(s)	229, 1052, 1076, 1270
HapII	CCGG	2 cut(s)	471, 674
HgaI	GACGC	1 cut(s)	411
Hin1I	GRCGYC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	173, 569, 743
HpaII	CCGG	2 cut(s)	471, 674
HphI	GGTGA	3 cut(s)	319, 374, 1226
Hpy166II	GTNNAC	4 cut(s)	6, 148, 301, 1392
Hpy188III	TCNNGA	5 cut(s)	43, 275, 488, 1208, 1364
Hpy8I	GTNNAC	4 cut(s)	6, 148, 301, 1392
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	3 cut(s)	559, 680, 1292
HpyCH4III	ACNGT	6 cut(s)	115, 152, 481, 710, 1214, 1220
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	5 cut(s)	143, 254, 322, 1228, 1291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1321, 1330
HpyF3I	CTNAG	2 cut(s)	206, 717
HpySE526I	ACGT	1 cut(s)	849
Hsp92I	GRCGYC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	408
LmnI	GCTCC	6 cut(s)	479, 748, 861, 934, 1126, 1194
Lsp1109I	GCAGC	5 cut(s)	293, 582, 1003, 1006, 1247
LweI	GCATC	2 cut(s)	873, 1138
MaeI	CTAG	2 cut(s)	599, 1023
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	3 cut(s)	29, 152, 1214
MboII	GAAGA	7 cut(s)	31, 263, 322, 449, 841, 925, 1148
MfeI	CAATTG	1 cut(s)	1325
MflI	RGATCY	2 cut(s)	20, 895
MluCI	AATT	5 cut(s)	71, 132, 945, 1325, 1369
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	405, 752
Mph1103I	ATGCAT	1 cut(s)	256
MroXI	GAANNNNTTC	3 cut(s)	495, 1155, 1281
MseI	TTAA	4 cut(s)	183, 891, 1059, 1356
MslI	CAYNNNNRTG	1 cut(s)	929
MspA1I	CMGCKG	1 cut(s)	595
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	471, 674
MspR9I	CCNGG	4 cut(s)	122, 231, 471, 1272
MunI	CAATTG	1 cut(s)	1325
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	122, 231, 1272
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	1321, 1330
NciI	CCSGG	1 cut(s)	471
NheI	GCTAGC	1 cut(s)	598
NlaIV	GGNNCC	5 cut(s)	475, 723, 881, 1190, 1332
NmuCI	GTSAC	1 cut(s)	1214
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	1 cut(s)	1385
PagI	TCATGA	3 cut(s)	42, 487, 1363
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	3 cut(s)	495, 1155, 1281
PfeI	GAWTC	2 cut(s)	569, 743
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	7 cut(s)	283, 385, 503, 597, 1018, 1021, 1237
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	721
PsiI	TTATAA	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	3 cut(s)	120, 229, 1270
PspGI	CCWGG	3 cut(s)	120, 229, 1270
PspN4I	GGNNCC	5 cut(s)	475, 723, 881, 1190, 1332
PspPI	GGNCC	2 cut(s)	227, 721
PspPPI	RGGWCCY	1 cut(s)	721
PsrI	GAACNNNNNNTAC	2 cut(s)	59, 91
PsuI	RGATCY	2 cut(s)	20, 895
PvuII	CAGCTG	1 cut(s)	595
RsaI	GTAC	3 cut(s)	149, 848, 1165
RsaNI	GTAC	3 cut(s)	148, 847, 1164
RseI	CAYNNNNRTG	1 cut(s)	929
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	183, 891, 1059, 1356
SatI	GCNGC	7 cut(s)	282, 384, 502, 596, 1017, 1020, 1236
Sau96I	GGNCC	2 cut(s)	227, 721
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	4 cut(s)	122, 231, 471, 1272
SfaNI	GCATC	2 cut(s)	873, 1138
SinI	GGWCC	1 cut(s)	721
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	2 cut(s)	182, 1258
SmoI	CTYRAG	2 cut(s)	182, 1258
Sse9I	AATT	5 cut(s)	71, 132, 945, 1325, 1369
SsiI	CCGC	4 cut(s)	129, 384, 501, 1070
SspMI	CTAG	2 cut(s)	599, 1023
StyD4I	CCNGG	4 cut(s)	120, 229, 469, 1270
TaaI	ACNGT	6 cut(s)	115, 152, 481, 710, 1214, 1220
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	4 cut(s)	287, 300, 805, 1080
TasI	AATT	5 cut(s)	71, 132, 945, 1325, 1369
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	386, 504
TfiI	GAWTC	2 cut(s)	569, 743
Tru1I	TTAA	4 cut(s)	183, 891, 1059, 1356
Tru9I	TTAA	4 cut(s)	183, 891, 1059, 1356
TscAI	CASTG	5 cut(s)	120, 150, 715, 991, 1310
TseFI	GTSAC	1 cut(s)	1214
TseI	GCWGC	5 cut(s)	281, 595, 1016, 1019, 1235
Tsp45I	GTSAC	1 cut(s)	1214
TspDTI	ATGAA	8 cut(s)	31, 59, 125, 476, 504, 1101, 1103, 1167
TspGWI	ACGGA	2 cut(s)	841, 1151
TspRI	CASTG	5 cut(s)	120, 150, 715, 991, 1310
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	721
XapI	RAATTY	2 cut(s)	71, 945
XceI	RCATGY	1 cut(s)	1385
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	3 cut(s)	495, 1155, 1281
XspI	CTAG	2 cut(s)	599, 1023
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.