Rmu_sc0006008.1_g000003

protein ubiquitination

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006008.1
Physical Location & Seq
Forward (+)
8979 .. 11692
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006008.1_g000003.1.cds

Sequence Viewer

Length: 1980 bp
atgtcgtcgacttataagacaagatccttttgttactatctcttcttgaaaaggaagtgggagaggatgaaagaattttactcggataactacctaaatatatgtttgcctcatacagtgtccaaggataccgcagttcatgttgcagtgtacagtgacaacgaagaactggtgaaatctctgcttcacatggtgtatagagaatacgcagattactttttgggaggaccagcaatatttcagaaacagaatgcatttggaaatacacctcttcacgaggcagcttcgataggaaatgtcgacatggtgaagatcataatgcaatatgatccgaagcaactgaatactaaaaacgagagaggtgaaacacccttttttacggccgccgtatatggcaacaccaatgtgatcaggcatttggcggcagagatcaagaaagatgctgtggagaatcatacctcatctcacggctccaccatgcttcatgaagctattcgcggctattactttgaaacagctctggagttagtaaaaccagaataccacatacggacagatcggaaggattcagatggcataacctgttttcagctgctagctaacattccatctgcttttgagagtggatattcctttggcatattggagaaactgatctatctttgccttccggtagatgattacagcaaaaacaaggacgaaaccaacagtgtatctcaggtccctccatctccaaatacagatttggagcgtggagatcacagcaaagacaaggatggaaacaaaaatgtatctcatttccctccaagtccaaacaagatcacagcaaaaatgtacgtcaccttttggagcatcattgctaaagggttcccatctattaaagatctgtgggacacaaagaagaagcacggcatagtggtggagctttcaaaacttctggctggaggagacaagtcatggcaggttaacaacactgatggtcaaaatgacactccacttctggctgctgctaggaatgggattatagaaatcattgaggccatttttaatctgttcccacaggccatcgagcatgaaaaccacaaaagagagaacatatttcatgttgttgtggagcatcggaggagacagcttttggaatatcttctccgaacttgtcatgtttcatatccgaggctcctgtggaaaatcaatcaagacggtgacggcattttgcataaagcagcatataagagtcactattcctcaagggagaggccaggggaagcccttcgcttgcagtcagatattcactggtttgagcgagtgaagaaattggtgcctccacatcacatcaaccatcttaatcatcatgaaaatttgacacctcatgctttgttcacaaaagagcataatgaactggtgaagaatggccaagaatggttaatcagaacaacaaactcttgcattatagttgcagttcttattgcaacggttgcttttacaagcatctacaccgtgcctggaggttcggatccaaagacaggcaagcccttgctcctaaccaaaacaccattcactgtcttcacagcatctgatgtggcatccctttgttttgccttcacctccgtggtggtgtttctatccatcagcacatcgaaaatgaatgagagagatttccggagggctctgccattgaagcttgttttggggttaagcatgctgttttggtctgtggcagcattgatggttggttttgctgctactcttgacattacaataaaccagaggctgcatcaggctactgctcttatcattaccattgcttgttttccagttgcctttttcctccttctgcagcttcctctctatttcaatattacttggtttacgataaaggacttgctgcaaactctagttgattgtattcctcaacaaaaatgtaagagctctagctgtcttatgcgctatcaagtgagctttggtcattcattgtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

659

Amino Acids

74.98

Weight (kDa)

8.6

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 1318
AccI GTMKAC 2 cut(s) 8, 300
AccII CGCG 1 cut(s) 498
AccIII TCCGGA 1 cut(s) 1659
AciI CCGC 4 cut(s) 132, 384, 422, 498
AclWI GGATC 4 cut(s) 18, 323, 1508, 1521
AcoI YGGCCR 2 cut(s) 381, 1411
AcsI RAATTY 2 cut(s) 74, 1357
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 152, 836
AfiI CCNNNNNNNGG 1 cut(s) 1523
AgsI TTSAA 5 cut(s) 49, 512, 930, 1678, 1855
AjnI CCWGG 2 cut(s) 1258, 1501
AjuI GAANNNNNNNTTGG 4 cut(s) 1538, 1570, 1670, 1702
AleI CACNNNNGTG 2 cut(s) 404, 1607
Alw21I GWGCWC 1 cut(s) 1931
Alw26I GTCTC 2 cut(s) 942, 1120
AlwI GGATC 4 cut(s) 18, 323, 1508, 1521
AlwNI CAGNNNCTG 2 cut(s) 1574, 1771
Aor13HI TCCGGA 1 cut(s) 1659
AoxI GGCC 5 cut(s) 381, 1038, 1062, 1256, 1411
ApoI RAATTY 2 cut(s) 74, 1357
Asp700I GAANNNNTTC 3 cut(s) 492, 1143, 1269
AspLEI GCGC 1 cut(s) 1947
AspS9I GGNCC 2 cut(s) 227, 721
AsuHPI GGTGA 7 cut(s) 184, 319, 374, 832, 1214, 1414, 1594
AsuNHI GCTAGC 1 cut(s) 595
AvaII GGWCC 2 cut(s) 227, 721
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BalI TGGCCA 1 cut(s) 1413
BamHI GGATCC 1 cut(s) 1513
BanI GGYRCC 1 cut(s) 1318
BanII GRGCYC 2 cut(s) 1669, 1931
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 1555
Bbv12I GWGCWC 1 cut(s) 1931
BceAI ACGGC 5 cut(s) 371, 396, 484, 925, 1222
BciT130I CCWGG 2 cut(s) 1260, 1503
BciVI GTATCC 1 cut(s) 121
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 942, 1120
BfaI CTAG 4 cut(s) 596, 1011, 1895, 1932
BfmI CTRYAG 1 cut(s) 1835
BfuAI ACCTGC 1 cut(s) 952
BfuI GTATCC 1 cut(s) 121
BglII AGATCT 1 cut(s) 883
Bme1390I CCNGG 2 cut(s) 1260, 1503
Bme18I GGWCC 2 cut(s) 227, 721
BmgT120I GGNCC 2 cut(s) 227, 721
BmiI GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
BmrFI CCNGG 2 cut(s) 1260, 1503
BmsI GCATC 7 cut(s) 430, 861, 1126, 1497, 1580, 1592, 1783
BmtI GCTAGC 1 cut(s) 599
BpiI GAAGAC 1 cut(s) 1555
BpmI CTGGAG 3 cut(s) 542, 963, 1524
BpuEI CTTGAG 1 cut(s) 1231
BsaJI CCNNGG 4 cut(s) 123, 1172, 1259, 1608
BsaWI WCCGGW 2 cut(s) 670, 1659
Bsc4I CCNNNNNNNGG 1 cut(s) 1523
Bse1I ACTGG 4 cut(s) 174, 1298, 1404, 1814
Bse3DI GCAATG 2 cut(s) 855, 1800
BseAI TCCGGA 1 cut(s) 1659
BseBI CCWGG 2 cut(s) 1260, 1503
BseDI CCNNGG 4 cut(s) 123, 1172, 1259, 1608
BseGI GGATG 3 cut(s) 72, 781, 1583
BseLI CCNNNNNNNGG 1 cut(s) 1523
BseMI GCAATG 2 cut(s) 855, 1800
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 4 cut(s) 174, 1298, 1404, 1814
BseRI GAGGAG 2 cut(s) 960, 1138
BseX3I CGGCCG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 498
Bsh1285I CGRYCG 1 cut(s) 384
BshFI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
BshNI GGYRCC 1 cut(s) 1318
BsiEI CGRYCG 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 1931
BsiSI CCGG 2 cut(s) 671, 1660
BslFI GGGAC 2 cut(s) 707, 905
BslI CCNNNNNNNGG 1 cut(s) 1523
BsmAI GTCTC 2 cut(s) 942, 1120
BsmFI GGGAC 2 cut(s) 707, 905
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
Bsp1286I GDGCHC 2 cut(s) 1669, 1931
Bsp13I TCCGGA 1 cut(s) 1659
Bsp1407I TGTACA 1 cut(s) 150
BspACI CCGC 4 cut(s) 132, 384, 422, 498
BspANI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
BspCNI CTCAG 1 cut(s) 730
BspEI TCCGGA 1 cut(s) 1659
BspFNI CGCG 1 cut(s) 498
BspHI TCATGA 2 cut(s) 484, 1351
BspLI GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
BspMAI CTGCAG 1 cut(s) 1839
BspMI ACCTGC 1 cut(s) 952
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 4 cut(s) 18, 323, 1508, 1521
BspT107I GGYRCC 1 cut(s) 1318
BsrDI GCAATG 2 cut(s) 855, 1800
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 4 cut(s) 174, 1298, 1404, 1814
BssECI CCNNGG 4 cut(s) 123, 1172, 1259, 1608
BssSI CACGAG 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 1260, 1503
Bst4CI ACNGT 7 cut(s) 118, 155, 710, 1202, 1474, 1498, 1561
Bst6I CTCTTC 2 cut(s) 47, 276
BstAPI GCANNNNNTGC 1 cut(s) 1475
BstAUI TGTACA 1 cut(s) 150
BstC8I GCNNGC 4 cut(s) 597, 1277, 1529, 1700
BstDEI CTNAG 1 cut(s) 717
BstDSI CCRYGG 1 cut(s) 1608
BstF5I GGATG 3 cut(s) 72, 781, 1583
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 1 cut(s) 1947
BstMAI GTCTC 2 cut(s) 942, 1120
BstMCI CGRYCG 1 cut(s) 384
BstMWI GCNNNNNNNGC 2 cut(s) 1475, 1678
BstNI CCWGG 2 cut(s) 1260, 1503
BstNSI RCATGY 1 cut(s) 1702
BstSCI CCNGG 2 cut(s) 1258, 1501
BstSFI CTRYAG 1 cut(s) 1835
BstUI CGCG 1 cut(s) 498
BstV2I GAAGAC 1 cut(s) 1555
BstX2I RGATCY 3 cut(s) 23, 883, 1513
BstYI RGATCY 3 cut(s) 23, 883, 1513
BstZI CGGCCG 1 cut(s) 381
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
BtgI CCRYGG 1 cut(s) 1608
BtsCI GGATG 3 cut(s) 72, 781, 1583
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 7 cut(s) 123, 153, 160, 715, 972, 1291, 1557
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 4 cut(s) 597, 1277, 1529, 1700
CaiI CAGNNNCTG 2 cut(s) 1574, 1771
CciI TCATGA 2 cut(s) 484, 1351
CfoI GCGC 1 cut(s) 1947
Cfr13I GGNCC 2 cut(s) 227, 721
Csp6I GTAC 2 cut(s) 151, 835
CviQI GTAC 2 cut(s) 151, 835
DdeI CTNAG 1 cut(s) 717
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 2 cut(s) 381, 1411
EagI CGGCCG 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 47, 276
EarI CTCTTC 2 cut(s) 47, 276
Ecl136II GAGCTC 1 cut(s) 1929
EclXI CGGCCG 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 2 cut(s) 1669, 1931
Eco47I GGWCC 2 cut(s) 227, 721
Eco52I CGGCCG 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 1929
EcoICRI GAGCTC 1 cut(s) 1929
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 1258, 1501
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 2 cut(s) 1669, 1931
ErhI CCWWGG 1 cut(s) 123
FaqI GGGAC 2 cut(s) 707, 905
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 2 cut(s) 8, 300
FokI GGATG 3 cut(s) 79, 788, 1570
FriOI GRGCYC 2 cut(s) 1669, 1931
FspBI CTAG 4 cut(s) 596, 1011, 1895, 1932
GlaI GCGC 1 cut(s) 1946
GsuI CTGGAG 3 cut(s) 542, 963, 1524
HaeIII GGCC 5 cut(s) 383, 1040, 1064, 1258, 1413
HapII CCGG 2 cut(s) 671, 1660
HhaI GCGC 1 cut(s) 1947
Hin6I GCGC 1 cut(s) 1945
HinP1I GCGC 1 cut(s) 1945
HincII GTYRAC 3 cut(s) 9, 301, 967
HindII GTYRAC 3 cut(s) 9, 301, 967
HindIII AAGCTT 1 cut(s) 1679
HinfI GANTC 3 cut(s) 451, 566, 1234
HpaI GTTAAC 1 cut(s) 967
HpaII CCGG 2 cut(s) 671, 1660
HphI GGTGA 7 cut(s) 184, 319, 374, 832, 1214, 1414, 1594
Hpy166II GTNNAC 6 cut(s) 9, 151, 301, 967, 1380, 1869
Hpy188III TCNNGA 9 cut(s) 46, 275, 433, 485, 521, 1196, 1352, 1660, 1748
Hpy8I GTNNAC 6 cut(s) 9, 151, 301, 967, 1380, 1869
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 556, 677, 1280, 1609, 1841
HpyCH4III ACNGT 7 cut(s) 118, 155, 710, 1202, 1474, 1498, 1561
HpyCH4IV ACGT 1 cut(s) 837
HpyF10VI GCNNNNNNNGC 2 cut(s) 1475, 1678
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 1 cut(s) 837
HspAI GCGC 1 cut(s) 1945
Kpn2I TCCGGA 1 cut(s) 1659
Ksp22I TGATCA 1 cut(s) 408
KspAI GTTAAC 1 cut(s) 967
LmnI GCTCC 7 cut(s) 476, 748, 849, 922, 1114, 1182, 1542
LweI GCATC 7 cut(s) 430, 861, 1126, 1497, 1580, 1592, 1783
MaeI CTAG 4 cut(s) 596, 1011, 1895, 1932
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 5 cut(s) 32, 155, 838, 1202, 1235
MboII GAAGA 9 cut(s) 34, 176, 263, 322, 913, 1136, 1321, 1417, 1555
MflI RGATCY 3 cut(s) 23, 883, 1513
MhlI GDGCHC 2 cut(s) 1669, 1931
MlsI TGGCCA 1 cut(s) 1413
MluCI AATT 3 cut(s) 74, 1313, 1357
MluNI TGGCCA 1 cut(s) 1413
MlyI GAGTC 1 cut(s) 1243
Mox20I TGGCCA 1 cut(s) 1413
Mph1103I ATGCAT 1 cut(s) 256
MroI TCCGGA 1 cut(s) 1659
MroXI GAANNNNTTC 3 cut(s) 492, 1143, 1269
MscI TGGCCA 1 cut(s) 1413
MseI TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
MslI CAYNNNNRTG 3 cut(s) 404, 917, 1607
Msp20I TGGCCA 1 cut(s) 1413
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 2 cut(s) 671, 1660
MspR9I CCNGG 2 cut(s) 1260, 1503
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 1260, 1503
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 1475, 1678
NheI GCTAGC 1 cut(s) 595
NlaIV GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
NmuCI GTSAC 4 cut(s) 155, 838, 1202, 1235
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 1702
OliI CACNNNNGTG 2 cut(s) 404, 1607
PaeI GCATGC 1 cut(s) 1702
PagI TCATGA 2 cut(s) 484, 1351
PctI GAATGC 1 cut(s) 256
PdmI GAANNNNTTC 3 cut(s) 492, 1143, 1269
PfeI GAWTC 2 cut(s) 451, 566
PleI GAGTC 1 cut(s) 1242
PpsI GAGTC 1 cut(s) 1242
PpuMI RGGWCCY 1 cut(s) 721
PsiI TTATAA 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 1931
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 1258, 1501
PspGI CCWGG 2 cut(s) 1258, 1501
PspN4I GGNNCC 6 cut(s) 472, 723, 869, 1178, 1320, 1515
PspPI GGNCC 2 cut(s) 227, 721
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 1 cut(s) 1839
PstNI CAGNNNCTG 2 cut(s) 1574, 1771
PsuI RGATCY 3 cut(s) 23, 883, 1513
PvuII CAGCTG 1 cut(s) 592
RsaI GTAC 2 cut(s) 152, 836
RsaNI GTAC 2 cut(s) 151, 835
RseI CAYNNNNRTG 3 cut(s) 404, 917, 1607
SacI GAGCTC 1 cut(s) 1931
SalI GTCGAC 2 cut(s) 7, 299
SaqAI TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
Sau96I GGNCC 2 cut(s) 227, 721
SchI GAGTC 1 cut(s) 1243
ScrFI CCNGG 2 cut(s) 1260, 1503
SduI GDGCHC 2 cut(s) 1669, 1931
SfaNI GCATC 7 cut(s) 430, 861, 1126, 1497, 1580, 1592, 1783
SfcI CTRYAG 1 cut(s) 1835
SinI GGWCC 2 cut(s) 227, 721
SmiMI CAYNNNNRTG 3 cut(s) 404, 917, 1607
SmlI CTYRAG 1 cut(s) 1246
SmoI CTYRAG 1 cut(s) 1246
SphI GCATGC 1 cut(s) 1702
Sse9I AATT 3 cut(s) 74, 1313, 1357
SsiI CCGC 4 cut(s) 132, 384, 422, 498
SspI AATATT 2 cut(s) 237, 1858
SspMI CTAG 4 cut(s) 596, 1011, 1895, 1932
SstI GAGCTC 1 cut(s) 1931
StyD4I CCNGG 2 cut(s) 1258, 1501
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 7 cut(s) 118, 155, 710, 1202, 1474, 1498, 1561
TaiI ACGT 1 cut(s) 840
TaqI TCGA 5 cut(s) 8, 287, 300, 1068, 1637
TasI AATT 3 cut(s) 74, 1313, 1357
TatI WGTACW 1 cut(s) 150
TauI GCSGC 3 cut(s) 386, 425, 501
TfiI GAWTC 2 cut(s) 451, 566
Tru1I TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
Tru9I TTAA 7 cut(s) 879, 966, 1047, 1344, 1424, 1694, 1978
TscAI CASTG 7 cut(s) 123, 153, 160, 715, 979, 1298, 1564
TseFI GTSAC 4 cut(s) 155, 838, 1202, 1235
Tsp45I GTSAC 4 cut(s) 155, 838, 1202, 1235
TspGWI ACGGA 2 cut(s) 565, 1597
TspRI CASTG 7 cut(s) 123, 153, 160, 715, 979, 1298, 1564
VpaK11BI GGWCC 2 cut(s) 227, 721
XapI RAATTY 2 cut(s) 74, 1357
XceI RCATGY 1 cut(s) 1702
XmiI GTMKAC 2 cut(s) 8, 300
XmnI GAANNNNTTC 3 cut(s) 492, 1143, 1269
XspI CTAG 4 cut(s) 596, 1011, 1895, 1932
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.