RLG00000030983

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008844
Physical Location & Seq
Forward (+)
1157934 .. 1158913
980 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030983

Sequence Viewer

Length: 717 bp
ATGGATTGTTGTAATAACCATATTATGTGCATAGTGCAGCGAGTGAAGAAATTGGTACCTCCACATCACATCAACCATCTTAATCATCATGACAATTTGACACCTCATGCTTTGTTCACAAAAGAGCATAAAGAACTGGTGAAGAATGGCCAAGAATGGTTAATCAGAACAACAAACTCTTGCATTATAGTTGCAGTTCTTATTGCAACGGTTGCTTTTACAAGCATCTACACCGTGCCTGGAGGTTCGGATCCAAAGACAGGCAAGCCTTTGCTCCTAACCAAAACCCCATTCACTGTCTTCACAGCATCTGATGTGGCATCCCTTTGTTTTGCCTTCACCTCCGTGGTGGTGTTTCTTTCCATCAGCACGTCGAAAATGAATGAGAGAGATTTCCGGAGGGCTCTGCCATTGAAGCTTGTTTTGGGGCTAAGCATGCTGTTTTGGTCTGTGGCAGCATTGATGGTTGGTTTTGCTGCTACTCTTGACATAACAATAAACCAGAGGCTGCATCAGGCTACTGCTCCGATCATTACCATTGCTTGTTTTCCAGTTGCCTTTTTCCTCCTCCTGCAGCTTCCTCTCTATTTCAATATTACTTGGTTTACTACAAAGGACTTGCTGCAAACCCTAGTTGATTGTATTCCTCAACGAAAATGTAAGAGCTCTAGCTGCATTATGCGCTATCAAGTGAGCTTTGGTCATTCCTTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

239

Amino Acids

26.65

Weight (kDa)

9.17

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 52 - 162 5e-24 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 396
AclWI GGATC 2 cut(s) 245, 258
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 2 cut(s) 415, 592
AjiI CACGTC 1 cut(s) 372
AjnI CCWGG 1 cut(s) 238
AjuI GAANNNNNNNTTGG 4 cut(s) 275, 307, 407, 439
AleI CACNNNNGTG 1 cut(s) 344
AluBI AGCT 5 cut(s) 418, 577, 666, 672, 696
AluI AGCT 5 cut(s) 418, 577, 666, 672, 696
Alw21I GWGCWC 1 cut(s) 668
AlwI GGATC 2 cut(s) 245, 258
AlwNI CAGNNNCTG 2 cut(s) 311, 508
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 7 cut(s) 37, 455, 476, 508, 574, 622, 672
Asp718I GGTACC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 684
AsuHPI GGTGA 2 cut(s) 151, 331
BalI TGGCCA 1 cut(s) 150
BamHI GGATCC 1 cut(s) 250
BanI GGYRCC 1 cut(s) 55
BanII GRGCYC 2 cut(s) 406, 668
BbsI GAAGAC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 7 cut(s) 49, 463, 467, 495, 586, 609, 659
BccI CCATC 3 cut(s) 84, 371, 457
BciT130I CCWGG 1 cut(s) 240
BfaI CTAG 2 cut(s) 632, 669
BfmI CTRYAG 1 cut(s) 572
BisI GCNGC 7 cut(s) 38, 456, 477, 509, 575, 623, 673
BlpI GCTNAGC 1 cut(s) 431
BlsI GCNGC 7 cut(s) 39, 457, 478, 510, 576, 624, 674
Bme1390I CCNGG 1 cut(s) 240
BmgBI CACGTC 1 cut(s) 372
BmiI GGNNCC 2 cut(s) 57, 252
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 4 cut(s) 234, 317, 329, 520
BpiI GAAGAC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 261
Bpu1102I GCTNAGC 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 141, 551
Bse3DI GCAATG 1 cut(s) 537
BseAI TCCGGA 1 cut(s) 396
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 537
BseNI ACTGG 2 cut(s) 141, 551
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 7 cut(s) 49, 463, 467, 495, 586, 609, 659
BsgI GTGCAG 1 cut(s) 56
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 668
BsiSI CCGG 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 260
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 406, 668
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 2 cut(s) 250, 528
Bsp1720I GCTNAGC 1 cut(s) 431
BspANI GGCC 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 396
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 57, 252
BspMAI CTGCAG 1 cut(s) 576
BspPI GGATC 2 cut(s) 245, 258
BspT107I GGYRCC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 2 cut(s) 141, 551
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 250, 528
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 3 cut(s) 211, 235, 298
BstAPI GCANNNNNTGC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 266, 437
BstDEI CTNAG 1 cut(s) 431
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 320
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 2 cut(s) 253, 531
BstMBI GATC 2 cut(s) 250, 528
BstMWI GCNNNNNNNGC 5 cut(s) 212, 415, 436, 672, 681
BstNI CCWGG 1 cut(s) 240
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 572
BstV1I GCAGC 7 cut(s) 49, 463, 467, 495, 586, 609, 659
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 266, 437
CaiI CAGNNNCTG 2 cut(s) 311, 508
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 684
Csp6I GTAC 1 cut(s) 56
CviAII CATG 3 cut(s) 89, 107, 436
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 431
DpnI GATC 2 cut(s) 252, 530
DpnII GATC 2 cut(s) 250, 528
EaeI YGGCCR 1 cut(s) 148
Ecl136II GAGCTC 1 cut(s) 666
Eco24I GRGCYC 2 cut(s) 406, 668
Eco53kI GAGCTC 1 cut(s) 666
EcoICRI GAGCTC 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 238
EcoT38I GRGCYC 2 cut(s) 406, 668
FaeI CATG 3 cut(s) 92, 110, 439
FatI CATG 3 cut(s) 88, 106, 435
Fnu4HI GCNGC 7 cut(s) 38, 456, 477, 509, 575, 623, 673
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 2 cut(s) 406, 668
Fsp4HI GCNGC 7 cut(s) 38, 456, 477, 509, 575, 623, 673
FspBI CTAG 2 cut(s) 632, 669
GlaI GCGC 1 cut(s) 683
GluI GCNGC 7 cut(s) 38, 456, 477, 509, 575, 623, 673
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 397
HhaI GCGC 1 cut(s) 684
Hin1II CATG 3 cut(s) 92, 110, 439
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 416
HpaII CCGG 1 cut(s) 397
HphI GGTGA 2 cut(s) 151, 331
Hpy166II GTNNAC 2 cut(s) 117, 606
Hpy188I TCNGA 4 cut(s) 167, 250, 313, 528
Hpy188III TCNNGA 3 cut(s) 89, 397, 485
Hpy8I GTNNAC 2 cut(s) 117, 606
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 3 cut(s) 211, 235, 298
HpyCH4IV ACGT 1 cut(s) 371
HpyCH4V TGCA 9 cut(s) 30, 37, 183, 194, 206, 511, 574, 625, 675
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 415, 436, 672, 681
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 3 cut(s) 92, 110, 439
HspAI GCGC 1 cut(s) 682
Kpn2I TCCGGA 1 cut(s) 396
KpnI GGTACC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 250, 528
LmnI GCTCC 2 cut(s) 279, 529
LpnPI CCDG 9 cut(s) 122, 225, 246, 252, 410, 500, 515, 564, 584
Lsp1109I GCAGC 7 cut(s) 49, 463, 467, 495, 586, 609, 659
LweI GCATC 4 cut(s) 234, 317, 329, 520
MaeI CTAG 2 cut(s) 632, 669
MaeII ACGT 1 cut(s) 371
MalI GATC 2 cut(s) 252, 530
MboI GATC 2 cut(s) 250, 528
MboII GAAGA 3 cut(s) 58, 154, 292
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 406, 668
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 50, 94
MluNI TGGCCA 1 cut(s) 150
Mox20I TGGCCA 1 cut(s) 150
MroI TCCGGA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 150
MseI TTAA 3 cut(s) 81, 161, 715
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 150
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 5 cut(s) 212, 415, 436, 672, 681
NdeII GATC 2 cut(s) 250, 528
NlaIII CATG 3 cut(s) 92, 110, 439
NlaIV GGNNCC 2 cut(s) 57, 252
NspI RCATGY 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 344
PaeI GCATGC 1 cut(s) 439
PagI TCATGA 1 cut(s) 88
PkrI GCNGC 7 cut(s) 39, 457, 478, 510, 576, 624, 674
Psp124BI GAGCTC 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 57, 252
PstI CTGCAG 1 cut(s) 576
PstNI CAGNNNCTG 2 cut(s) 311, 508
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 668
SaqAI TTAA 3 cut(s) 81, 161, 715
SatI GCNGC 7 cut(s) 38, 456, 477, 509, 575, 623, 673
Sau3AI GATC 2 cut(s) 250, 528
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 406, 668
SfaNI GCATC 4 cut(s) 234, 317, 329, 520
SfcI CTRYAG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 344
SphI GCATGC 1 cut(s) 439
Sse9I AATT 2 cut(s) 50, 94
SspI AATATT 1 cut(s) 595
SspMI CTAG 2 cut(s) 632, 669
SstI GAGCTC 1 cut(s) 668
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 3 cut(s) 211, 235, 298
TaiI ACGT 1 cut(s) 374
TaqI TCGA 1 cut(s) 374
TasI AATT 2 cut(s) 50, 94
Tru1I TTAA 3 cut(s) 81, 161, 715
Tru9I TTAA 3 cut(s) 81, 161, 715
TscAI CASTG 1 cut(s) 301
TseI GCWGC 7 cut(s) 37, 455, 476, 508, 574, 622, 672
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 1 cut(s) 301
XceI RCATGY 1 cut(s) 439
XspI CTAG 2 cut(s) 632, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.