Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008844

Physical Location & Seq

Genomic Coordinates Forward (+)

1321680 .. 1335468

Gene Structure 13789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG018300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCCCAGTTATAGCAGTGTTGCCCATATTTACGATCTCTTCTTGAAAAAGAAATGGAAACTGTTGAAGAGCTTTTACGAGGAAAACAAATTTGATGCGTTTCTGCCTCTTAATCATTTAAATGATACGGCTCTTCATCTTGCAGTGTACAGTGAAGACCTGGATTTGGTGGAATATCTGCTGGAGATGTACACACACAACCCTTTTGTCTCATCAGACTCAGACACTCCTACTGTCTCAGACCCAAACACTCCTCCTGTCTCAGACTCGAACACTCCTCCTGTCTCAGCTGTTTTTAAATTCTCCTTAGAGAATGCATCTGGAAACACGCCACTTCATGAGGCAGCTTCAATAGGAAATGTCGCATTGGTAAATTTGATAATGAGATATGATCACGATCACAAGCTACTGAACACTCAAAACAAGAATGGTGAAACACCAATTTTTATGGCCGCACTTTATGGCAAGACCGATTTGATAAAAGAATGGTTGGAGTATGTTGGGGACAGAGAGAATCATTTCCAGTCTAATAACTCCACCATGCTTCATGAGGCTATCCGCGGCTATTACTTTGAAACAGCTCTGGAATTATTAGACCCAAAATACAGCATACTGAAGGATAGAAAGGAATCAAAGGATTATAATAGCAAGACCTACTTTCAGCTGCTAGCTGGCATTCCCTCTGCTTTCAAGAGTGGATATTCCTTTGGCATATTGGAGAAACTGATCTATGACGGCCTTCCAGTTCCAGAAGATAAGGATGAAAGTGAAAACAACAATGTATCTCCGGTCAATCCAAGTCGAAAGACTGACACAAAGCATGGAAATTCAAGCAAATACTTCGGGTGGATTTGGAGACTCATTGCTATAGGATTTCCATCAGTCCAAAGTCTAAGAGACACGAAGATGAAGCACGGCATAGTGGTGAAGCTAACCAAAATTCTGGCTAAAATAGACAAGTCATGGTTTTATGATACTACTAATGGTCCTATGCCAAAAGAAAATAATGATACTACTGATGGTCAAGGTGACAGTCCACTTATTGCAGCTGCAAAGAATGGGATCACAGAGATTGTTGAGGCCATCTTGGATGTGTTCCCACAGGCCATCGAGCATGAAAACCACAAAAAAGAAAATGTATTTCATGTTGCTGTGCAGAATCGCAGGACAAATGTCTTGAATCTTCTCAAATCTTATAAATTTGACTATTCAAGGCTCATTTGTAAGTTCAATGCAGATGGTGAGGGTATTTTGCATAAAGCTGCATACAAGAGTGATATTCCCTCAAGGGAGAGGCCTGGGGAAGCCCTTTGCTTGCAGTCAGATATTCAATGGTTTGAGGAAATTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

450

Amino Acids

51.17

Weight (kDa)

5.71

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	112 - 201	8.8e-10	Ankyrin repeats (3 copies)
Ank_2	PF12796	335 - 403	8e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g01320
rosa_chinensis	RchiOBHm_Chr5g0001861 RchiOBHm_Chr5g0001871 RchiOBHm_Chr5g0001931
rosa_laevigata	RLG00000030979 RLG00000030982 RLG00000030983
rosa_multiflora	Rmu_sc0000378.1_g000006 Rmu_sc0000378.1_g000016 Rmu_sc0006008.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071330 Rroxscaffold_1G00074400 Rroxscaffold_1G00074490
rosa_rugosa	Rorug04G0393600 Rorug04G0393600 Rorug04G0393900
rosa_samantha	Rh5AG014900 Rh5BG018300 Rh5CG016000 Rh5DG016400 Rh5DG016900
rosa_wichuraiana	Rw5G001440 Rw5G001470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	642, 1197
AccII	CGCG	1 cut(s)	561
AciI	CCGC	3 cut(s)	453, 559, 561
AclWI	GGATC	1 cut(s)	1070
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	7 cut(s)	89, 299, 373, 826, 939, 1199, 1344
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	2 cut(s)	149, 191
AfiI	CCNNNNNNNGG	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	159, 1297
Alw26I	GTCTC	6 cut(s)	214, 241, 265, 289, 850, 891
AlwI	GGATC	1 cut(s)	1070
AoxI	GGCC	5 cut(s)	450, 736, 1080, 1104, 1295
ApeKI	GCWGC	5 cut(s)	344, 664, 1046, 1049, 1262
ApoI	RAATTY	7 cut(s)	89, 299, 373, 826, 939, 1199, 1344
Asp700I	GAANNNNTTC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	986
AsuHPI	GGTGA	4 cut(s)	443, 937, 1040, 1253
AsuNHI	GCTAGC	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	986
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	356, 651, 1036, 1058, 1249
BccI	CCATC	5 cut(s)	886, 1013, 1091, 1115, 1232
BceAI	ACGGC	3 cut(s)	144, 751, 931
BcgI	CGANNNNNNTGC	2 cut(s)	823, 857
BciT130I	CCWGG	2 cut(s)	161, 1299
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	6 cut(s)	214, 241, 265, 289, 850, 891
BfaI	CTAG	1 cut(s)	668
BfmI	CTRYAG	1 cut(s)	867
BisI	GCNGC	7 cut(s)	345, 453, 562, 665, 1047, 1050, 1263
BlsI	GCNGC	7 cut(s)	346, 454, 563, 666, 1048, 1051, 1264
Bme1390I	CCNGG	2 cut(s)	161, 1299
Bme18I	GGWCC	1 cut(s)	986
BmgT120I	GGNCC	1 cut(s)	986
BmrFI	CCNGG	2 cut(s)	161, 1299
BmsI	GCATC	2 cut(s)	85, 326
BmtI	GCTAGC	1 cut(s)	671
BoxI	GACNNNNGTC	1 cut(s)	1172
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	1270
BsaBI	GATNNNNATC	2 cut(s)	396, 877
BsaJI	CCNNGG	2 cut(s)	559, 1298
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	3 cut(s)	6, 523, 743
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	2 cut(s)	396, 877
BseBI	CCWGG	2 cut(s)	161, 1299
BseDI	CCNNGG	2 cut(s)	559, 1298
BseGI	GGATG	2 cut(s)	766, 1096
BseJI	GATNNNNATC	2 cut(s)	396, 877
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	4 cut(s)	234, 252, 276, 300
BseNI	ACTGG	3 cut(s)	6, 523, 743
BseRI	GAGGAG	2 cut(s)	243, 267
BseXI	GCAGC	5 cut(s)	356, 651, 1036, 1058, 1249
BsgI	GTGCAG	1 cut(s)	1175
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	5 cut(s)	452, 738, 1082, 1106, 1297
BsiSI	CCGG	1 cut(s)	788
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	6 cut(s)	214, 241, 265, 289, 850, 891
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	2 cut(s)	319, 675
BsnI	GGCC	5 cut(s)	452, 738, 1082, 1106, 1297
Bsp1407I	TGTACA	2 cut(s)	147, 189
Bsp143I	GATC	5 cut(s)	34, 391, 397, 726, 1062
BspACI	CCGC	3 cut(s)	453, 559, 561
BspANI	GGCC	5 cut(s)	452, 738, 1082, 1106, 1297
BspCNI	CTCAG	4 cut(s)	233, 251, 275, 299
BspFNI	CGCG	1 cut(s)	561
BspHI	TCATGA	2 cut(s)	337, 547
BspOI	GCTAGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	1070
BspQI	GCTCTTC	2 cut(s)	62, 138
BsrDI	GCAATG	1 cut(s)	861
BsrGI	TGTACA	2 cut(s)	147, 189
BsrI	ACTGG	3 cut(s)	6, 523, 743
BssECI	CCNNGG	2 cut(s)	559, 1298
BssMI	GATC	5 cut(s)	34, 391, 397, 726, 1062
Bst2UI	CCWGG	2 cut(s)	161, 1299
Bst4CI	ACNGT	4 cut(s)	63, 152, 235, 1034
Bst6I	CTCTTC	3 cut(s)	44, 62, 138
BstAUI	TGTACA	2 cut(s)	147, 189
BstC8I	GCNNGC	3 cut(s)	669, 673, 1316
BstDEI	CTNAG	6 cut(s)	220, 238, 262, 286, 307, 893
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	766, 1096
BstFNI	CGCG	1 cut(s)	561
BstKTI	GATC	5 cut(s)	37, 394, 400, 729, 1065
BstMAI	GTCTC	6 cut(s)	214, 241, 265, 289, 850, 891
BstMBI	GATC	5 cut(s)	34, 391, 397, 726, 1062
BstNI	CCWGG	2 cut(s)	161, 1299
BstPAI	GACNNNNGTC	1 cut(s)	1172
BstSCI	CCNGG	2 cut(s)	159, 1297
BstSFI	CTRYAG	1 cut(s)	867
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	5 cut(s)	356, 651, 1036, 1058, 1249
BstV2I	GAAGAC	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	943
BsuRI	GGCC	5 cut(s)	452, 738, 1082, 1106, 1297
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	766, 1096
BtsI	GCAGTG	2 cut(s)	22, 150
BtsIMutI	CAGTG	3 cut(s)	22, 150, 157
Cac8I	GCNNGC	3 cut(s)	669, 673, 1316
CciI	TCATGA	2 cut(s)	337, 547
Cfr13I	GGNCC	1 cut(s)	986
Cfr42I	CCGCGG	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	148, 190
CviAII	CATG	7 cut(s)	338, 541, 548, 821, 963, 1115, 1145
CviQI	GTAC	2 cut(s)	148, 190
DdeI	CTNAG	6 cut(s)	220, 238, 262, 286, 307, 893
DpnI	GATC	5 cut(s)	36, 393, 399, 728, 1064
DpnII	GATC	5 cut(s)	34, 391, 397, 726, 1062
DraI	TTTAAA	2 cut(s)	120, 298
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	3 cut(s)	44, 62, 138
EarI	CTCTTC	3 cut(s)	44, 62, 138
Eco147I	AGGCCT	1 cut(s)	1297
Eco47I	GGWCC	1 cut(s)	986
Eco57I	CTGAAG	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	159, 1297
EcoT22I	ATGCAT	1 cut(s)	319
FaeI	CATG	7 cut(s)	341, 544, 551, 824, 966, 1118, 1148
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	7 cut(s)	337, 540, 547, 820, 962, 1114, 1144
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	7 cut(s)	345, 453, 562, 665, 1047, 1050, 1263
FokI	GGATG	2 cut(s)	773, 1103
Fsp4HI	GCNGC	7 cut(s)	345, 453, 562, 665, 1047, 1050, 1263
FspBI	CTAG	1 cut(s)	668
GluI	GCNGC	7 cut(s)	345, 453, 562, 665, 1047, 1050, 1263
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	5 cut(s)	452, 738, 1082, 1106, 1297
HapII	CCGG	1 cut(s)	788
Hin1II	CATG	7 cut(s)	341, 544, 551, 824, 966, 1118, 1148
HinfI	GANTC	7 cut(s)	218, 266, 514, 629, 858, 1159, 1180
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	4 cut(s)	443, 937, 1040, 1253
Hpy166II	GTNNAC	3 cut(s)	148, 192, 1037
Hpy188I	TCNGA	5 cut(s)	217, 223, 241, 265, 1324
Hpy188III	TCNNGA	9 cut(s)	43, 321, 338, 395, 548, 584, 691, 749, 1177
Hpy8I	GTNNAC	3 cut(s)	148, 192, 1037
HpyAV	CCTTC	2 cut(s)	610, 749
HpyCH4III	ACNGT	4 cut(s)	63, 152, 235, 1034
HpyCH4V	TGCA	9 cut(s)	143, 317, 1046, 1052, 1156, 1235, 1255, 1265, 1318
HpyF3I	CTNAG	6 cut(s)	220, 238, 262, 286, 307, 893
Hsp92II	CATG	7 cut(s)	341, 544, 551, 824, 966, 1118, 1148
Ksp22I	TGATCA	1 cut(s)	391
KspI	CCGCGG	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	34, 391, 397, 726, 1062
LguI	GCTCTTC	2 cut(s)	62, 138
Lsp1109I	GCAGC	5 cut(s)	356, 651, 1036, 1058, 1249
LweI	GCATC	2 cut(s)	85, 326
MaeI	CTAG	1 cut(s)	668
MaeIII	GTNAC	1 cut(s)	1028
MalI	GATC	5 cut(s)	36, 393, 399, 728, 1064
MboI	GATC	5 cut(s)	34, 391, 397, 726, 1062
MboII	GAAGA	7 cut(s)	31, 79, 125, 167, 764, 916, 1175
MluCI	AATT	9 cut(s)	89, 299, 373, 441, 587, 826, 939, 1199, 1344
MlyI	GAGTC	3 cut(s)	212, 260, 852
MmeI	TCCRAC	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	319
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	3 cut(s)	111, 119, 297
MslI	CAYNNNNRTG	3 cut(s)	120, 905, 923
MspA1I	CMGCKG	4 cut(s)	290, 561, 664, 1049
MspI	CCGG	1 cut(s)	788
MspR9I	CCNGG	2 cut(s)	161, 1299
Mva1269I	GAATGC	2 cut(s)	319, 675
MvaI	CCWGG	2 cut(s)	161, 1299
MvnI	CGCG	1 cut(s)	561
NdeII	GATC	5 cut(s)	34, 391, 397, 726, 1062
NheI	GCTAGC	1 cut(s)	667
NlaIII	CATG	7 cut(s)	341, 544, 551, 824, 966, 1118, 1148
NmuCI	GTSAC	1 cut(s)	1028
NsiI	ATGCAT	1 cut(s)	319
PagI	TCATGA	2 cut(s)	337, 547
PceI	AGGCCT	1 cut(s)	1297
PciSI	GCTCTTC	2 cut(s)	62, 138
PctI	GAATGC	2 cut(s)	319, 675
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	4 cut(s)	514, 629, 1159, 1180
PkrI	GCNGC	7 cut(s)	346, 454, 563, 666, 1048, 1051, 1264
PleI	GAGTC	3 cut(s)	212, 260, 852
PpsI	GAGTC	3 cut(s)	212, 260, 852
PshAI	GACNNNNGTC	1 cut(s)	1172
PsiI	TTATAA	2 cut(s)	642, 1197
Psp6I	CCWGG	2 cut(s)	159, 1297
PspGI	CCWGG	2 cut(s)	159, 1297
PspPI	GGNCC	1 cut(s)	986
PvuII	CAGCTG	3 cut(s)	290, 664, 1049
RsaI	GTAC	2 cut(s)	149, 191
RsaNI	GTAC	2 cut(s)	148, 190
RseI	CAYNNNNRTG	3 cut(s)	120, 905, 923
SacII	CCGCGG	1 cut(s)	562
SapI	GCTCTTC	2 cut(s)	62, 138
SaqAI	TTAA	3 cut(s)	111, 119, 297
SatI	GCNGC	7 cut(s)	345, 453, 562, 665, 1047, 1050, 1263
Sau3AI	GATC	5 cut(s)	34, 391, 397, 726, 1062
Sau96I	GGNCC	1 cut(s)	986
SchI	GAGTC	3 cut(s)	212, 260, 852
ScrFI	CCNGG	2 cut(s)	161, 1299
SfaNI	GCATC	2 cut(s)	85, 326
SfcI	CTRYAG	1 cut(s)	867
Sfr303I	CCGCGG	1 cut(s)	562
SgrBI	CCGCGG	1 cut(s)	562
SinI	GGWCC	1 cut(s)	986
SmiI	ATTTAAAT	1 cut(s)	120
SmiMI	CAYNNNNRTG	3 cut(s)	120, 905, 923
SmlI	CTYRAG	1 cut(s)	1285
SmoI	CTYRAG	1 cut(s)	1285
Sse9I	AATT	9 cut(s)	89, 299, 373, 441, 587, 826, 939, 1199, 1344
SseBI	AGGCCT	1 cut(s)	1297
SsiI	CCGC	3 cut(s)	453, 559, 561
SspMI	CTAG	1 cut(s)	668
StuI	AGGCCT	1 cut(s)	1297
StyD4I	CCNGG	2 cut(s)	159, 1297
SwaI	ATTTAAAT	1 cut(s)	120
TaaI	ACNGT	4 cut(s)	63, 152, 235, 1034
TaqI	TCGA	3 cut(s)	269, 802, 1110
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	9 cut(s)	89, 299, 373, 441, 587, 826, 939, 1199, 1344
TatI	WGTACW	2 cut(s)	147, 189
TauI	GCSGC	2 cut(s)	455, 564
TfiI	GAWTC	4 cut(s)	514, 629, 1159, 1180
Tru1I	TTAA	3 cut(s)	111, 119, 297
Tru9I	TTAA	3 cut(s)	111, 119, 297
TscAI	CASTG	3 cut(s)	22, 150, 157
TseFI	GTSAC	1 cut(s)	1028
TseI	GCWGC	5 cut(s)	344, 664, 1046, 1049, 1262
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	7 cut(s)	125, 326, 536, 777, 923, 1131, 1133
TspRI	CASTG	3 cut(s)	22, 150, 157
VpaK11BI	GGWCC	1 cut(s)	986
XapI	RAATTY	7 cut(s)	89, 299, 373, 826, 939, 1199, 1344
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	1 cut(s)	668
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.