RchiOBHm_Chr5g0001931

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008844
Physical Location & Seq
Forward (+)
1098673 .. 1100145
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28331

Sequence Viewer

Length: 1068 bp
ATGGTGGTGGAGCTTTCAAAAATTCTGGCTGGAGGAGACAAGTCATGGCAGGTTAACAACACTGATGGTCAAAATGACACTCCACTTCTGGCTGCTGCTAGGAATGGGATTATAGAAATCATTGAGGCCATTTTTAATCTGTTCCCACAGGCCATCGAGCATGAAAACCACAAAAGAGAGAACATATTTCATGTTGTTGTGGAGCATCGGAGGAGACAGCTTTTGGAATATCTTCTCCAAACTTGTCATGTTTCATATCCGAGGCTCCTGTGGAAAATCAATCAAGACGGTGACGGCATTTTGCATAAAGCAGCATATAAGAGTCACTATTCCTCAAGGGAGAGGCCAGGGGAAGCCCTTCGCTTGCAGTCAGATATTCACTGGTTTGAGCGAGTGAAGAAATTGGTGCCTCCACATCACATCAACCATCTTAATCATCATGACAATTTGACACCTCATGCTTTGTTCACAAAAGAGCATAAAGAACTGGTGAAGAATGGCCAAGAATGGTTAATCAGAACAACAAACTCTTGCATTATAGTTGCAGTTCTTATTGCAACAGTTGCTTTTACAAGCATCTACACCTTGCCTGGAGGTTTGGATCCAAAGACAGGCAAGCCCTTGCTCCTAACCAAAACACCATTCACTGTCTTCACAGCATCTGATGTGGCATCCCTTTGTTTTGCCTTCACCTCCGTGGTGGTGTTTCTATCCATCAGCACATCGAAAATGAATGAGAGAGATTTCCGGAGGGCTCTGCCATTGAAGCTTGTTTTGGGGTTAAGCATGCTGTTTTGGTCTGTGGCAGCATTGATGGTTGGTTTTGCTGCTACTCTTGACATTACAATAAACCAGAGGCTGCATCAGGCTACTGCTCCGATCATTACCATTGCTTGTTTTCCAGTTGCCTTTTTCCTCCTTCTGCAGCTTCCTCTCTATTTCAATATTACTTGGTTTACGATAAAGGACTTGCTGCAAACTCTAGTTGATTGTATTCCTCAACAAAAATGTAAGAGTTCTAGCTGCATTATGCGCTATCAAGTGAGCTTTGGTCATTCATTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

355

Amino Acids

40.26

Weight (kDa)

8.96

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 169 - 279 1e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 406
AccIII TCCGGA 1 cut(s) 747
AclWI GGATC 2 cut(s) 596, 609
AcoI YGGCCR 1 cut(s) 499
AcsI RAATTY 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 611
AgsI TTSAA 3 cut(s) 18, 766, 943
AjnI CCWGG 2 cut(s) 346, 589
AjuI GAANNNNNNNTTGG 4 cut(s) 626, 658, 758, 790
AleI CACNNNNGTG 1 cut(s) 695
AluBI AGCT 6 cut(s) 13, 220, 769, 928, 1023, 1047
AluI AGCT 6 cut(s) 13, 220, 769, 928, 1023, 1047
Alw26I GTCTC 2 cut(s) 30, 208
AlwI GGATC 2 cut(s) 596, 609
AlwNI CAGNNNCTG 2 cut(s) 662, 859
Aor13HI TCCGGA 1 cut(s) 747
AoxI GGCC 4 cut(s) 126, 150, 344, 499
ApeKI GCWGC 9 cut(s) 92, 95, 311, 806, 827, 859, 925, 973, 1023
ApoI RAATTY 1 cut(s) 21
Asp700I GAANNNNTTC 2 cut(s) 231, 357
AspLEI GCGC 1 cut(s) 1035
AsuHPI GGTGA 3 cut(s) 302, 502, 682
BalI TGGCCA 1 cut(s) 501
BamHI GGATCC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 643
BbvI GCAGC 9 cut(s) 79, 82, 323, 814, 818, 846, 937, 960, 1010
BccI CCATC 5 cut(s) 59, 161, 435, 722, 808
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 2 cut(s) 348, 591
BcoDI GTCTC 2 cut(s) 30, 208
BfaI CTAG 3 cut(s) 99, 983, 1020
BfmI CTRYAG 1 cut(s) 923
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 9 cut(s) 93, 96, 312, 807, 828, 860, 926, 974, 1024
BlsI GCNGC 9 cut(s) 94, 97, 313, 808, 829, 861, 927, 975, 1025
Bme1390I CCNGG 2 cut(s) 348, 591
BmiI GGNNCC 3 cut(s) 266, 408, 603
BmrFI CCNGG 2 cut(s) 348, 591
BmsI GCATC 5 cut(s) 214, 585, 668, 680, 871
BpiI GAAGAC 1 cut(s) 643
BpmI CTGGAG 2 cut(s) 51, 612
BpuEI CTTGAG 1 cut(s) 319
BsaJI CCNNGG 3 cut(s) 260, 347, 696
BsaWI WCCGGW 1 cut(s) 747
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 3 cut(s) 386, 492, 902
Bse3DI GCAATG 1 cut(s) 888
BseAI TCCGGA 1 cut(s) 747
BseBI CCWGG 2 cut(s) 348, 591
BseDI CCNNGG 3 cut(s) 260, 347, 696
BseGI GGATG 1 cut(s) 671
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMI GCAATG 1 cut(s) 888
BseNI ACTGG 3 cut(s) 386, 492, 902
BseRI GAGGAG 2 cut(s) 48, 226
BseXI GCAGC 9 cut(s) 79, 82, 323, 814, 818, 846, 937, 960, 1010
BshFI GGCC 4 cut(s) 128, 152, 346, 501
BshNI GGYRCC 1 cut(s) 406
BsiSI CCGG 1 cut(s) 748
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 2 cut(s) 30, 208
BsnI GGCC 4 cut(s) 128, 152, 346, 501
Bsp1286I GDGCHC 1 cut(s) 757
Bsp13I TCCGGA 1 cut(s) 747
Bsp143I GATC 2 cut(s) 601, 879
BspANI GGCC 4 cut(s) 128, 152, 346, 501
BspEI TCCGGA 1 cut(s) 747
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 3 cut(s) 266, 408, 603
BspMAI CTGCAG 1 cut(s) 927
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 2 cut(s) 596, 609
BspT107I GGYRCC 1 cut(s) 406
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 3 cut(s) 386, 492, 902
BssECI CCNNGG 3 cut(s) 260, 347, 696
BssMI GATC 2 cut(s) 601, 879
Bst2UI CCWGG 2 cut(s) 348, 591
Bst4CI ACNGT 3 cut(s) 290, 562, 649
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 3 cut(s) 365, 617, 788
BstDSI CCRYGG 1 cut(s) 696
BstF5I GGATG 1 cut(s) 671
BstHHI GCGC 1 cut(s) 1035
BstKTI GATC 2 cut(s) 604, 882
BstMAI GTCTC 2 cut(s) 30, 208
BstMBI GATC 2 cut(s) 601, 879
BstMWI GCNNNNNNNGC 3 cut(s) 563, 766, 1032
BstNI CCWGG 2 cut(s) 348, 591
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 2 cut(s) 346, 589
BstSFI CTRYAG 1 cut(s) 923
BstV1I GCAGC 9 cut(s) 79, 82, 323, 814, 818, 846, 937, 960, 1010
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 4 cut(s) 128, 152, 346, 501
BtgI CCRYGG 1 cut(s) 696
BtsCI GGATG 1 cut(s) 671
BtsIMutI CAGTG 3 cut(s) 60, 379, 645
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 3 cut(s) 365, 617, 788
CaiI CAGNNNCTG 2 cut(s) 662, 859
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 1035
CviAII CATG 7 cut(s) 45, 161, 191, 248, 440, 458, 787
DpnI GATC 2 cut(s) 603, 881
DpnII GATC 2 cut(s) 601, 879
EaeI YGGCCR 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 757
EcoRII CCWGG 2 cut(s) 346, 589
EcoT38I GRGCYC 1 cut(s) 757
FaeI CATG 7 cut(s) 48, 164, 194, 251, 443, 461, 790
FatI CATG 7 cut(s) 44, 160, 190, 247, 439, 457, 786
Fnu4HI GCNGC 9 cut(s) 93, 96, 312, 807, 828, 860, 926, 974, 1024
FokI GGATG 1 cut(s) 658
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 9 cut(s) 93, 96, 312, 807, 828, 860, 926, 974, 1024
FspBI CTAG 3 cut(s) 99, 983, 1020
GlaI GCGC 1 cut(s) 1034
GluI GCNGC 9 cut(s) 93, 96, 312, 807, 828, 860, 926, 974, 1024
GsuI CTGGAG 2 cut(s) 51, 612
HaeIII GGCC 4 cut(s) 128, 152, 346, 501
HapII CCGG 1 cut(s) 748
HhaI GCGC 1 cut(s) 1035
Hin1II CATG 7 cut(s) 48, 164, 194, 251, 443, 461, 790
Hin6I GCGC 1 cut(s) 1033
HinP1I GCGC 1 cut(s) 1033
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 1 cut(s) 322
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 1 cut(s) 748
HphI GGTGA 3 cut(s) 302, 502, 682
Hpy166II GTNNAC 3 cut(s) 55, 468, 957
Hpy188I TCNGA 6 cut(s) 210, 261, 373, 518, 664, 879
Hpy188III TCNNGA 4 cut(s) 284, 440, 748, 836
Hpy8I GTNNAC 3 cut(s) 55, 468, 957
HpyAV CCTTC 3 cut(s) 368, 697, 929
HpyCH4III ACNGT 3 cut(s) 290, 562, 649
HpyCH4V TGCA 9 cut(s) 304, 367, 534, 545, 557, 862, 925, 976, 1026
HpyF10VI GCNNNNNNNGC 3 cut(s) 563, 766, 1032
Hsp92II CATG 7 cut(s) 48, 164, 194, 251, 443, 461, 790
HspAI GCGC 1 cut(s) 1033
Kpn2I TCCGGA 1 cut(s) 747
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 601, 879
LmnI GCTCC 5 cut(s) 10, 202, 270, 630, 880
Lsp1109I GCAGC 9 cut(s) 79, 82, 323, 814, 818, 846, 937, 960, 1010
LweI GCATC 5 cut(s) 214, 585, 668, 680, 871
MaeI CTAG 3 cut(s) 99, 983, 1020
MaeIII GTNAC 2 cut(s) 290, 323
MalI GATC 2 cut(s) 603, 881
MboI GATC 2 cut(s) 601, 879
MboII GAAGA 4 cut(s) 224, 409, 505, 643
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 757
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 3 cut(s) 21, 401, 445
MluNI TGGCCA 1 cut(s) 501
MlyI GAGTC 1 cut(s) 331
Mox20I TGGCCA 1 cut(s) 501
MroI TCCGGA 1 cut(s) 747
MroXI GAANNNNTTC 2 cut(s) 231, 357
MscI TGGCCA 1 cut(s) 501
MseI TTAA 6 cut(s) 54, 135, 432, 512, 782, 1066
MslI CAYNNNNRTG 1 cut(s) 695
Msp20I TGGCCA 1 cut(s) 501
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 2 cut(s) 348, 591
MvaI CCWGG 2 cut(s) 348, 591
MwoI GCNNNNNNNGC 3 cut(s) 563, 766, 1032
NdeII GATC 2 cut(s) 601, 879
NlaIII CATG 7 cut(s) 48, 164, 194, 251, 443, 461, 790
NlaIV GGNNCC 3 cut(s) 266, 408, 603
NmuCI GTSAC 2 cut(s) 290, 323
NspI RCATGY 1 cut(s) 790
OliI CACNNNNGTG 1 cut(s) 695
PaeI GCATGC 1 cut(s) 790
PagI TCATGA 1 cut(s) 439
PdmI GAANNNNTTC 2 cut(s) 231, 357
PkrI GCNGC 9 cut(s) 94, 97, 313, 808, 829, 861, 927, 975, 1025
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 346, 589
PspGI CCWGG 2 cut(s) 346, 589
PspN4I GGNNCC 3 cut(s) 266, 408, 603
PstI CTGCAG 1 cut(s) 927
PstNI CAGNNNCTG 2 cut(s) 662, 859
PsuI RGATCY 1 cut(s) 601
RseI CAYNNNNRTG 1 cut(s) 695
SaqAI TTAA 6 cut(s) 54, 135, 432, 512, 782, 1066
SatI GCNGC 9 cut(s) 93, 96, 312, 807, 828, 860, 926, 974, 1024
Sau3AI GATC 2 cut(s) 601, 879
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 2 cut(s) 348, 591
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 5 cut(s) 214, 585, 668, 680, 871
SfcI CTRYAG 1 cut(s) 923
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SphI GCATGC 1 cut(s) 790
Sse9I AATT 3 cut(s) 21, 401, 445
SspI AATATT 1 cut(s) 946
SspMI CTAG 3 cut(s) 99, 983, 1020
StyD4I CCNGG 2 cut(s) 346, 589
TaaI ACNGT 3 cut(s) 290, 562, 649
TaqI TCGA 2 cut(s) 156, 725
TasI AATT 3 cut(s) 21, 401, 445
Tru1I TTAA 6 cut(s) 54, 135, 432, 512, 782, 1066
Tru9I TTAA 6 cut(s) 54, 135, 432, 512, 782, 1066
TscAI CASTG 3 cut(s) 67, 386, 652
TseFI GTSAC 2 cut(s) 290, 323
TseI GCWGC 9 cut(s) 92, 95, 311, 806, 827, 859, 925, 973, 1023
Tsp45I GTSAC 2 cut(s) 290, 323
TspDTI ATGAA 5 cut(s) 177, 179, 243, 746, 1047
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 3 cut(s) 67, 386, 652
XapI RAATTY 1 cut(s) 21
XceI RCATGY 1 cut(s) 790
XmnI GAANNNNTTC 2 cut(s) 231, 357
XspI CTAG 3 cut(s) 99, 983, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.