RchiOBHm_Chr6g0266851

Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003618
Physical Location & Seq
Reverse (-)
23335719 .. 23346396
10678 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23933

Sequence Viewer

Length: 2442 bp
ATGGGAGGATGCTGTCCCCCGATGGATCTGTTCAGGTCGGAGCCTATGCAGCTCGTCCAGATCATCATCCCCATCGAGTCCGCCCACCTCACCGTCTCTTATCTCGGCGACCTCGGCCTCCTCCAATTCAAAGACCTTAATTCAGAGAAGAGCCCGTTTCAGAGGACTTATGCTACTCAGATTAAAAGAGCTGGTGAGATGGCACGCAAATTACGTTTCTTCAAGGACCAAATGTTAAAGGCTGGTCTGCCTCCTACAAAGTCTAGAAGACAAGCTGACCTCAATGTAGATGATCTAGAGGTAAAACTTGGTGAGCTCGAGGCTGAGCTGATTGAAATTAATGCGAATGGTGAAAAATTGCAGCGTTCATATAATGAACTCTTAGAATATAAGCTTGTCCTGCAAAAGGCTGGTGAGTTTTTTCATTCAGCTGAAAGCAGCGCCAGGTCGCAGCAAAGAGATGAATCCCGTCATACTGGTGATGACGCCTTGGATACACCGTTATTGGTGGACCAAGAATCATCAACTGATCCATCAAAGCAAGTTAAGTTGGGGTTTCTCACCGGTCTTGTTCCTAGGGGAAAGTCTTTGGCATTTGAGAGGATTCTATTTCGAGCTACTAGGGGTAATGTTTTTCTAAGGCAGGCCGTTGTTGAGAATCCTGTTACAGATCCAGTGACAGGAGAGAAGATTGAGAAAAATGTTTTTGTTGTATTCTATTCTGGAGAAAGAGCAAAGAACAAGATTCTTAAAATTTGTGATGCCTTTGGAGCGAATCGTTACCCTTTTACTGAGGACCTAAGTAAACAAGCTCAAACGATTAATGAGGTTGCAGGTAAACTTTCAGAGCTAAAGACTACAATAGATATTGGAGTTTCACACCGGGAAAGTTTGTTACAGACTATTGGCGAACATTATGAGCAATGGAACCATTTGGCGAGGAAGGAGAAAGCCATACACCACACTCTTAATATGCTTAGCCTCGATGTAACCAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTATTTTTGCATCGAAGCAGATCCAGGAGGCATTGCAGCGGGCAGCTTTTGACTCCAATTCTCAAGTTGGAGCTATCTTCCAGGTTCTGCATACAAAGGAAGCACCACCAACATATTTCCGCACAAACAAGTTCACTTCTTCATTTCAAGAGATTGTTGATGCATATGGTGTGGCCAAGTATCAAGAAGCAAATCCTGCTGTATATACTATCATCACATTTCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGACATGGACTATGTTTGCTTCTTGCGACATTATATTTGATAGTCAGGGAAAGGAAATTTTCTAATGAGAAACTTGGAGATATCATGGAGATGGCATTTGGTGGCCGTTATGTTATTCTATTGATGTCAATTTTCTCAATCTACACTGGTTTCATCTATAATGAGTTCTTCTCTGTCCCATTTGAACTGTTTGGTCGCTCAGCATATGCATGCCGTGATCTTTCTTGCAGAGATGCCACTACTGCTGGCTTGATTAAGGTGGGTCCCACATACCCATTTGGTCTGGATCCTGTGTGGCATGGATCTCGCAGTGAGCTGCCATTCTTAAACTCATTGAAGATGAAAATGTCAATTCTTATTGGGGTGGTCCAAATGAACCTTGGAATTGTGATAAGTTATTTCAATGCAAAGTTCTTTCAAAATGGTCTGAATGTTTGGTTCCAGTTTGTCCCTCAGCTGATATTCTTAAACAGTCTATTTGGCTACTTGTCTGTTCTGATTGTTATGAAGTGGTGGACTGGTTCAAAAGTTGATCTATACCATGTAATGATATATATGTTCCTCAGTCCTACTGATGAGCTAGGTGAAAATCAGCTTTTCAGTGGTCAGAAAACAGTTCAGTTAGTGCTATTAGGTTTGGCTCTTATAGCTGTACCATGGATGCTGCTTCCAAAGCCTTTCCTCATGAAGAAGCAACATGAAGCTAGTCACCAAGGCCAATCATATGCTCTACTTGAGAGCACTGAGGAGAGTTTGCAAGTGAATTCAAACCATGATGCCCATGGTCATGAGGAGTTTGAATTTAGTGAAATTTTTGTACATCAACTCATACACACAATAGAGTTTGTACTTGGAGCGGTCTCAAATACAGCTTCCTATCTTCGACTATGGGCCCTAAGTCTTGCTCATTCAGAATTATCCAGTGTGTTCTATGACAAGGTTCTCGTAATGGCTTTTGGGTTCAACAATTGGGTTATACGTATTGTGGGCATCTTGGTCTTCGTTTGCGCCACTGTTGGTGTTTTGCTACTGATGGAAACTCTCAGTGCTTTCCTTCATGCTTTGCGACTTCACTGGGTGGAATTCCAAAACAAGTTTTACGAGGGAGATGGTTACAAGTTCTATCCATTCTCATTTGTATTGCATGACGATGAAGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000325 GO:0000331 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006882 GO:0006885 GO:0006897 GO:0006909 GO:0006911 GO:0007035 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009536 GO:0009678 GO:0009705 GO:0009941 GO:0009987 GO:0010008 GO:0010324 GO:0012505 GO:0012506 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019725 GO:0019829 GO:0019899 GO:0022607 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030139 GO:0030641 GO:0030659 GO:0030666 GO:0030670 GO:0031090 GO:0031164 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032009 GO:0032119 GO:0032991 GO:0033176 GO:0034220 GO:0034622 GO:0034641 GO:0034654 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045335 GO:0045735 GO:0045851 GO:0046034 GO:0046390 GO:0046483 GO:0046916 GO:0046961 GO:0048878 GO:0050801 GO:0051117 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051452 GO:0051453 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0055086 GO:0061024 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071704 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098657 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099024 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05165 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05165 map05323
Pfam Domains
Protein Families
V_ATPase_I

Protein Analysis

813

Amino Acids

92.25

Weight (kDa)

6.06

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V_ATPase_I PF01496 34 - 805 1.6e-300 V-type ATPase 116kDa subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 824
AccBSI CCGCTC 1 cut(s) 2135
AciI CCGC 4 cut(s) 81, 1063, 1144, 2135
AclWI GGATC 7 cut(s) 33, 524, 665, 1039, 1559, 1572, 1588
AcoI YGGCCR 2 cut(s) 1197, 1381
AcsI RAATTY 6 cut(s) 753, 1334, 2041, 2078, 2088, 2360
AcyI GRCGYC 1 cut(s) 486
AdeI CACNNNGTG 1 cut(s) 2356
AfaI GTAC 3 cut(s) 1932, 2097, 2127
AfiI CCNNNNNNNGG 2 cut(s) 406, 680
AgeI ACCGGT 1 cut(s) 563
AjnI CCWGG 3 cut(s) 443, 1047, 1104
Alw21I GWGCWC 2 cut(s) 318, 2021
Alw26I GTCTC 2 cut(s) 100, 2143
AlwI GGATC 7 cut(s) 33, 524, 665, 1039, 1559, 1572, 1588
AlwNI CAGNNNCTG 1 cut(s) 1111
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 6 cut(s) 115, 645, 1197, 1381, 1993, 2169
ApaI GGGCCC 1 cut(s) 2173
ApeKI GCWGC 8 cut(s) 49, 361, 438, 451, 1060, 1067, 1594, 1942
ApoI RAATTY 6 cut(s) 753, 1334, 2041, 2078, 2088, 2360
ArsI GACNNNNNNTTYG 2 cut(s) 1297, 1329
AseI ATTAAT 2 cut(s) 339, 822
AsiGI ACCGGT 1 cut(s) 563
AspA2I CCTAGG 1 cut(s) 575
AspLEI GCGC 2 cut(s) 443, 2288
AspS9I GGNCC 7 cut(s) 226, 511, 796, 1541, 1645, 2169, 2170
AsuC2I CCSGG 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 5 cut(s) 226, 511, 796, 1541, 1645
AvrII CCTAGG 1 cut(s) 575
BaeGI GKGCMC 1 cut(s) 2173
BalI TGGCCA 1 cut(s) 1199
BamHI GGATCC 1 cut(s) 1564
BanII GRGCYC 3 cut(s) 155, 318, 2173
BbsI GAAGAC 2 cut(s) 274, 2269
Bbv12I GWGCWC 2 cut(s) 318, 2021
BbvCI CCTCAGC 2 cut(s) 1011, 1731
BbvI GCAGC 8 cut(s) 61, 373, 450, 463, 1072, 1079, 1581, 1929
BccI CCATC 7 cut(s) 16, 80, 193, 541, 1363, 2305, 2381
BceAI ACGGC 3 cut(s) 632, 1368, 1476
BcgI CGANNNNNNTGC 2 cut(s) 1565, 1599
BciT130I CCWGG 3 cut(s) 445, 1049, 1106
BciVI GTATCC 1 cut(s) 487
BcnI CCSGG 1 cut(s) 884
BcoDI GTCTC 2 cut(s) 100, 2143
BfaI CTAG 6 cut(s) 264, 296, 576, 621, 1859, 1983
BfoI RGCGCY 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 824
BfuI GTATCC 1 cut(s) 487
BisI GCNGC 8 cut(s) 50, 362, 439, 452, 1061, 1068, 1595, 1943
BlnI CCTAGG 1 cut(s) 575
BlpI GCTNAGC 3 cut(s) 324, 977, 1477
BlsI GCNGC 8 cut(s) 51, 363, 440, 453, 1062, 1069, 1596, 1944
Bme1390I CCNGG 4 cut(s) 445, 884, 1049, 1106
Bme18I GGWCC 5 cut(s) 226, 511, 796, 1541, 1645
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 7 cut(s) 226, 511, 796, 1541, 1645, 2169, 2170
BmiI GGNNCC 7 cut(s) 42, 929, 1542, 1543, 1566, 1718, 2171
BmrFI CCNGG 4 cut(s) 445, 884, 1049, 1106
BmrI ACTGGG 1 cut(s) 2362
BmsI GCATC 7 cut(s) 751, 1043, 1174, 1501, 1929, 2044, 2277
BmuI ACTGGG 1 cut(s) 2362
BpiI GAAGAC 2 cut(s) 274, 2269
BplI GAGNNNNNCTC 2 cut(s) 1433, 1465
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 2 cut(s) 1011, 1731
Bpu1102I GCTNAGC 3 cut(s) 324, 977, 1477
BpuEI CTTGAG 2 cut(s) 1071, 2033
BpuMI CCSGG 1 cut(s) 884
BsaAI YACGTR 1 cut(s) 2258
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 2143
BsaJI CCNNGG 7 cut(s) 112, 489, 575, 1657, 1934, 1990, 2059
BsaWI WCCGGW 1 cut(s) 563
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 680
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 7 cut(s) 481, 674, 1429, 1720, 1801, 2199, 2357
Bse3DI GCAATG 2 cut(s) 929, 1055
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 3 cut(s) 445, 1049, 1106
BseDI CCNNGG 7 cut(s) 112, 489, 575, 1657, 1934, 1990, 2059
BseGI GGATG 3 cut(s) 14, 66, 1944
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 406, 680
BseMI GCAATG 2 cut(s) 929, 1055
BseMII CTCAG 9 cut(s) 191, 315, 783, 1002, 1491, 1745, 1855, 2013, 2335
BseNI ACTGG 7 cut(s) 481, 674, 1429, 1720, 1801, 2199, 2357
BseRI GAGGAG 3 cut(s) 110, 2039, 2084
BseSI GKGCMC 1 cut(s) 2173
BseXI GCAGC 8 cut(s) 61, 373, 450, 463, 1072, 1079, 1581, 1929
BshFI GGCC 6 cut(s) 117, 647, 1199, 1383, 1995, 2171
BshTI ACCGGT 1 cut(s) 563
BsiHKAI GWGCWC 2 cut(s) 318, 2021
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 2 cut(s) 564, 883
BslFI GGGAC 4 cut(s) 1293, 1439, 1527, 1712
BslI CCNNNNNNNGG 2 cut(s) 406, 680
BsmAI GTCTC 2 cut(s) 100, 2143
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 4 cut(s) 1293, 1439, 1527, 1712
BsnI GGCC 6 cut(s) 117, 647, 1199, 1383, 1995, 2171
Bso31I GGTCTC 1 cut(s) 2143
BsoBI CYCGRG 1 cut(s) 317
Bsp120I GGGCCC 1 cut(s) 2169
Bsp1286I GDGCHC 4 cut(s) 155, 318, 2021, 2173
Bsp1407I TGTACA 1 cut(s) 2095
Bsp1720I GCTNAGC 3 cut(s) 324, 977, 1477
Bsp19I CCATGG 2 cut(s) 1934, 2059
BspACI CCGC 4 cut(s) 81, 1063, 1144, 2135
BspANI GGCC 6 cut(s) 117, 647, 1199, 1383, 1995, 2171
BspCNI CTCAG 9 cut(s) 190, 316, 784, 1003, 1490, 1744, 1854, 2014, 2334
BspHI TCATGA 2 cut(s) 1962, 2065
BspLI GGNNCC 7 cut(s) 42, 929, 1542, 1543, 1566, 1718, 2171
BspMI ACCTGC 1 cut(s) 824
BspPI GGATC 7 cut(s) 33, 524, 665, 1039, 1559, 1572, 1588
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 2143
BsrBI CCGCTC 1 cut(s) 2135
BsrDI GCAATG 2 cut(s) 929, 1055
BsrFI RCCGGY 1 cut(s) 563
BsrGI TGTACA 1 cut(s) 2095
BsrI ACTGG 7 cut(s) 481, 674, 1429, 1720, 1801, 2199, 2357
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 7 cut(s) 112, 489, 575, 1657, 1934, 1990, 2059
BssNI GRCGYC 1 cut(s) 486
BssT1I CCWWGG 6 cut(s) 489, 575, 1657, 1934, 1990, 2059
Bst2UI CCWGG 3 cut(s) 445, 1049, 1106
Bst4CI ACNGT 6 cut(s) 94, 501, 1467, 1751, 1894, 2293
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 1220
BstAUI TGTACA 1 cut(s) 2095
BstBAI YACGTR 1 cut(s) 2258
BstC8I GCNNGC 5 cut(s) 205, 645, 1065, 1489, 1525
BstDSI CCRYGG 2 cut(s) 1934, 2059
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 3 cut(s) 14, 66, 1944
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 2 cut(s) 443, 2288
BstMAI GTCTC 2 cut(s) 100, 2143
BstMWI GCNNNNNNNGC 8 cut(s) 49, 114, 400, 770, 1220, 1520, 1925, 1951
BstNI CCWGG 3 cut(s) 445, 1049, 1106
BstNSI RCATGY 1 cut(s) 1491
BstSCI CCNGG 4 cut(s) 443, 882, 1047, 1104
BstSLI GKGCMC 1 cut(s) 2173
BstSNI TACGTA 1 cut(s) 2258
BstV1I GCAGC 8 cut(s) 61, 373, 450, 463, 1072, 1079, 1581, 1929
BstV2I GAAGAC 2 cut(s) 274, 2269
BstX2I RGATCY 5 cut(s) 25, 670, 1044, 1564, 1580
BstYI RGATCY 5 cut(s) 25, 670, 1044, 1564, 1580
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 6 cut(s) 117, 647, 1199, 1383, 1995, 2171
BtgI CCRYGG 2 cut(s) 1934, 2059
BtsCI GGATG 3 cut(s) 14, 66, 1944
BtsI GCAGTG 1 cut(s) 1594
BtsIMutI CAGTG 9 cut(s) 681, 1422, 1594, 1885, 2019, 2206, 2289, 2329, 2350
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 5 cut(s) 205, 645, 1065, 1489, 1525
CaiI CAGNNNCTG 1 cut(s) 1111
CciI TCATGA 2 cut(s) 1962, 2065
CfoI GCGC 2 cut(s) 443, 2288
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 7 cut(s) 226, 511, 796, 1541, 1645, 2169, 2170
CseI GACGC 1 cut(s) 494
Csp6I GTAC 3 cut(s) 1931, 2096, 2126
CspAI ACCGGT 1 cut(s) 563
CviQI GTAC 3 cut(s) 1931, 2096, 2126
DraIII CACNNNGTG 1 cut(s) 2356
EaeI YGGCCR 2 cut(s) 1197, 1381
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 316
Eco105I TACGTA 1 cut(s) 2258
Eco130I CCWWGG 6 cut(s) 489, 575, 1657, 1934, 1990, 2059
Eco24I GRGCYC 3 cut(s) 155, 318, 2173
Eco31I GGTCTC 1 cut(s) 2143
Eco32I GATATC 1 cut(s) 1360
Eco47I GGWCC 5 cut(s) 226, 511, 796, 1541, 1645
Eco53kI GAGCTC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 316
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoO109I RGGNCCY 3 cut(s) 796, 1541, 2170
EcoRI GAATTC 2 cut(s) 2041, 2360
EcoRII CCWGG 3 cut(s) 443, 1047, 1104
EcoRV GATATC 1 cut(s) 1360
EcoT14I CCWWGG 6 cut(s) 489, 575, 1657, 1934, 1990, 2059
EcoT22I ATGCAT 2 cut(s) 1189, 1489
EcoT38I GRGCYC 3 cut(s) 155, 318, 2173
ErhI CCWWGG 6 cut(s) 489, 575, 1657, 1934, 1990, 2059
Esp3I CGTCTC 1 cut(s) 100
FaqI GGGAC 4 cut(s) 1293, 1439, 1527, 1712
FauI CCCGC 1 cut(s) 1056
FauNDI CATATG 3 cut(s) 1189, 1483, 2002
Fnu4HI GCNGC 8 cut(s) 50, 362, 439, 452, 1061, 1068, 1595, 1943
FokI GGATG 3 cut(s) 21, 53, 1951
FriOI GRGCYC 3 cut(s) 155, 318, 2173
Fsp4HI GCNGC 8 cut(s) 50, 362, 439, 452, 1061, 1068, 1595, 1943
FspBI CTAG 6 cut(s) 264, 296, 576, 621, 1859, 1983
GlaI GCGC 2 cut(s) 442, 2287
GluI GCNGC 8 cut(s) 50, 362, 439, 452, 1061, 1068, 1595, 1943
GsuI CTGGAG 1 cut(s) 744
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 6 cut(s) 117, 647, 1199, 1383, 1995, 2171
HapII CCGG 2 cut(s) 564, 883
HgaI GACGC 1 cut(s) 494
HhaI GCGC 2 cut(s) 443, 2288
Hin1I GRCGYC 1 cut(s) 486
Hin6I GCGC 2 cut(s) 441, 2286
HinP1I GCGC 2 cut(s) 441, 2286
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 9 cut(s) 77, 464, 518, 604, 658, 745, 775, 1021, 1076
HpaII CCGG 2 cut(s) 564, 883
Hpy166II GTNNAC 5 cut(s) 511, 806, 839, 1158, 1794
Hpy188I TCNGA 9 cut(s) 40, 145, 162, 180, 847, 1707, 1776, 1887, 2191
Hpy188III TCNNGA 9 cut(s) 58, 264, 296, 723, 1172, 1208, 1562, 1963, 2066
Hpy8I GTNNAC 5 cut(s) 511, 806, 839, 1158, 1794
HpyAV CCTTC 2 cut(s) 937, 2342
HpyCH4III ACNGT 6 cut(s) 94, 501, 1467, 1751, 1894, 2293
HpyCH4IV ACGT 2 cut(s) 214, 2257
HpyF10VI GCNNNNNNNGC 8 cut(s) 49, 114, 400, 770, 1220, 1520, 1925, 1951
HpySE526I ACGT 2 cut(s) 214, 2257
Hsp92I GRCGYC 1 cut(s) 486
HspAI GCGC 2 cut(s) 441, 2286
KflI GGGWCCC 1 cut(s) 1541
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 4 cut(s) 40, 770, 1094, 2132
Lsp1109I GCAGC 8 cut(s) 61, 373, 450, 463, 1072, 1079, 1581, 1929
LweI GCATC 7 cut(s) 751, 1043, 1174, 1501, 1929, 2044, 2277
MaeI CTAG 6 cut(s) 264, 296, 576, 621, 1859, 1983
MaeII ACGT 2 cut(s) 214, 2257
MaeIII GTNAC 7 cut(s) 664, 676, 779, 894, 988, 1985, 2390
MbiI CCGCTC 1 cut(s) 2135
MfeI CAATTG 1 cut(s) 2245
MflI RGATCY 5 cut(s) 25, 670, 1044, 1564, 1580
MhlI GDGCHC 4 cut(s) 155, 318, 2021, 2173
MlsI TGGCCA 1 cut(s) 1199
MluNI TGGCCA 1 cut(s) 1199
MlyI GAGTC 3 cut(s) 86, 1030, 1070
MmeI TCCRAC 2 cut(s) 18, 1072
Mox20I TGGCCA 1 cut(s) 1199
Mph1103I ATGCAT 2 cut(s) 1189, 1489
MscI TGGCCA 1 cut(s) 1199
MslI CAYNNNNRTG 5 cut(s) 477, 1367, 1486, 2064, 2427
Msp20I TGGCCA 1 cut(s) 1199
MspA1I CMGCKG 3 cut(s) 431, 1063, 1735
MspI CCGG 2 cut(s) 564, 883
MspR9I CCNGG 4 cut(s) 445, 884, 1049, 1106
MunI CAATTG 1 cut(s) 2245
MvaI CCWGG 3 cut(s) 445, 1049, 1106
MwoI GCNNNNNNNGC 8 cut(s) 49, 114, 400, 770, 1220, 1520, 1925, 1951
NciI CCSGG 1 cut(s) 884
NcoI CCATGG 2 cut(s) 1934, 2059
NdeI CATATG 3 cut(s) 1189, 1483, 2002
NlaIV GGNNCC 7 cut(s) 42, 929, 1542, 1543, 1566, 1718, 2171
NmeAIII GCCGAG 2 cut(s) 84, 93
NmuCI GTSAC 2 cut(s) 676, 1985
NsiI ATGCAT 2 cut(s) 1189, 1489
NspI RCATGY 1 cut(s) 1491
PaeI GCATGC 1 cut(s) 1491
PaeR7I CTCGAG 1 cut(s) 317
PagI TCATGA 2 cut(s) 1962, 2065
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 211, 2433
PfeI GAWTC 6 cut(s) 464, 518, 604, 658, 745, 775
PfoI TCCNGGA 1 cut(s) 1047
PinAI ACCGGT 1 cut(s) 563
PkrI GCNGC 8 cut(s) 51, 363, 440, 453, 1062, 1069, 1596, 1944
PleI GAGTC 3 cut(s) 85, 1029, 1070
PpsI GAGTC 3 cut(s) 85, 1029, 1070
Ppu21I YACGTR 1 cut(s) 2258
PpuMI RGGWCCY 2 cut(s) 796, 1541
PshBI ATTAAT 2 cut(s) 339, 822
Psp124BI GAGCTC 1 cut(s) 318
Psp5II RGGWCCY 2 cut(s) 796, 1541
Psp6I CCWGG 3 cut(s) 443, 1047, 1104
PspGI CCWGG 3 cut(s) 443, 1047, 1104
PspN4I GGNNCC 7 cut(s) 42, 929, 1542, 1543, 1566, 1718, 2171
PspOMI GGGCCC 1 cut(s) 2169
PspPI GGNCC 7 cut(s) 226, 511, 796, 1541, 1645, 2169, 2170
PspPPI RGGWCCY 2 cut(s) 796, 1541
PspXI VCTCGAGB 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 1111
PsuI RGATCY 5 cut(s) 25, 670, 1044, 1564, 1580
PvuII CAGCTG 2 cut(s) 431, 1735
RsaI GTAC 3 cut(s) 1932, 2097, 2127
RsaNI GTAC 3 cut(s) 1931, 2096, 2126
RseI CAYNNNNRTG 5 cut(s) 477, 1367, 1486, 2064, 2427
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 143
SatI GCNGC 8 cut(s) 50, 362, 439, 452, 1061, 1068, 1595, 1943
Sau96I GGNCC 7 cut(s) 226, 511, 796, 1541, 1645, 2169, 2170
SchI GAGTC 3 cut(s) 86, 1030, 1070
ScrFI CCNGG 4 cut(s) 445, 884, 1049, 1106
SduI GDGCHC 4 cut(s) 155, 318, 2021, 2173
SfaNI GCATC 7 cut(s) 751, 1043, 1174, 1501, 1929, 2044, 2277
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 5 cut(s) 226, 511, 796, 1541, 1645
SlaI CTCGAG 1 cut(s) 317
SmiMI CAYNNNNRTG 5 cut(s) 477, 1367, 1486, 2064, 2427
SmlI CTYRAG 3 cut(s) 317, 1086, 2012
SmoI CTYRAG 3 cut(s) 317, 1086, 2012
SnaBI TACGTA 1 cut(s) 2258
SphI GCATGC 1 cut(s) 1491
SsiI CCGC 4 cut(s) 81, 1063, 1144, 2135
SspMI CTAG 6 cut(s) 264, 296, 576, 621, 1859, 1983
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 4 cut(s) 443, 882, 1047, 1104
StyI CCWWGG 6 cut(s) 489, 575, 1657, 1934, 1990, 2059
TaaI ACNGT 6 cut(s) 94, 501, 1467, 1751, 1894, 2293
TaiI ACGT 2 cut(s) 217, 2260
TaqI TCGA 6 cut(s) 75, 318, 613, 984, 1037, 2161
TatI WGTACW 2 cut(s) 2095, 2125
TfiI GAWTC 6 cut(s) 464, 518, 604, 658, 745, 775
TscAI CASTG 9 cut(s) 681, 1429, 1594, 1885, 2026, 2206, 2296, 2329, 2357
TseFI GTSAC 2 cut(s) 676, 1985
TseI GCWGC 8 cut(s) 49, 361, 438, 451, 1060, 1067, 1594, 1942
Tsp45I GTSAC 2 cut(s) 676, 1985
TspRI CASTG 9 cut(s) 681, 1429, 1594, 1885, 2026, 2206, 2296, 2329, 2357
VpaK11BI GGWCC 5 cut(s) 226, 511, 796, 1541, 1645
VspI ATTAAT 2 cut(s) 339, 822
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 6 cut(s) 753, 1334, 2041, 2078, 2088, 2360
XbaI TCTAGA 2 cut(s) 263, 295
XceI RCATGY 1 cut(s) 1491
XcmI CCANNNNNNNNNTGG 2 cut(s) 1655, 2057
XhoI CTCGAG 1 cut(s) 317
XmaJI CCTAGG 1 cut(s) 575
XspI CTAG 6 cut(s) 264, 296, 576, 621, 1859, 1983
Zsp2I ATGCAT 2 cut(s) 1189, 1489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.