Rh6BG149400

Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003618
Physical Location & Seq
Reverse (-)
24054393 .. 24065062
10670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG149400.1

Sequence Viewer

Length: 2379 bp
ATGGGAGGATGCTGTCCCCCGATGGATCTGTTCAGGTCGGAGCCTATGCAGCTCGTCCAGATCATCATCCCCATCGAGTCCGCCCACCTCACCGTCTCTTATCTCGGCGACCTCGGCCTCCTCCAATTCAAAGACCTTAATTCAGAGAAGAGCCCATTTCAGAGGACTTATGCTACTCAGATTAAAAGAGCTGGTGAGATGGCACGCAAATTACGTTTCTTCAAGGACCAAATGGTAAAGGCTGGTCTGCCTCCTACAAAGTCTAGAAGACAAGCTGACCTCAATGTAGATGATCTAGAGCGTTCATATAATGAACTCTTAGAATATAAGCTTGTCCTGCAAAAGGCTGGTGAGTTTTTTCATTCAGCTGAAAGCAGCGCCAGGTCGCAGCAGAGAGATGAATCCCGTCATACTGGTGATGACGCCCTGGATACACCGTTATTGGTGGACCAAGAATCATCAACTGATCCATCAAAGCAAGTTAAGTTGGGGTTTCTCACCGGTCTTGTTCCTAGGGGAAAGTCTTTGGCATTTGAGAGGATTCTATTTCGAGCTACTAGGGGTAATGTTTTTCTAAGGCAGGCCGTTGTTGAGAATCCTGTTACAGATCCGGTGACAGGAGAGAAGATTGAGAAAAATGTTTTTGTTGTATTCTATTCTGGAGAAAGAGCAAAGAACAAGATTCTTAAAATTTGTGATGCCTTTGGAGCCAATCGTTACCCTTTTACTGAGGACCTAAGTAAACAAGCTCAAACGATTAATGAGGTTACAGGTAAACTTTCAGAGCTAAAGATTACTATAGATATTGGAGTTTCACACCGGGAAAGTTTGTTACAGACTATTGGCGAACATTATGAGCAATGGAACCATTTGGCGAGGAAGGAGAAAGCCATACACCACACTCTTAATATGCTTAGCCTCGATGTAACCAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTATTTTTGCATCGAAGCAGATCCAGGAGGCATTGCAGCGGGCAGCTTTTGACTCCAATTCTCAAGTTGGAGCTATCTTCCAGGTTCTGCATACAAAGGAAGCACCACCAACATATTTCCGCACAAACAAGTTCACTTCTTCATTTCAAGAGATTGTTGATGCATATGGTGTGGCCAAGTATCAAGAAGCAAATCCTGCTGTATATACTATCATCACATTTCCATTTCTTTTTGCTGTCATGTTTGGTGATTGGGGACATGGACTATGTTTGCTTCTTGCGACATTATATTTGATAGTCAGGGAAAGGAAATTTTCTAATGAGAAACTTGGAGATATCATGGAGATGGCATTTGGTGGCCGTTATGTTATTCTATTGATGTCAATTTTCTCAATCTACACTGGTTTCATCTATAATGAGTTCTTCTCTGTCCCATTTGAACTGTTTGGTCGCTCAGCATATGCATGCCGTGATCTTTCTTGCAGAGATGCCACTACTGCTGGCTTGATTAAGGTGGGTCCCACATACCCATTTGGTCTGGATCCTGTGTGGCATGGATCTCGCAGTGAGCTGCCATTCTTAAACTCATTGAAGATGAAAATGTCAATTCTTATTGGGGTGGTCCAAATGAACCTTGGAATTGTGATAAGTTATTTCAATGCAAAGTTCTTTCAAAATGGTCTGAACGTTTGGTTCCAGTTTGTCCCTCAGCTGATATTCTTAAACAGTCTATTTGGCTACTTGTCTGTTCTGATTGTTATGAAGTGGTGGACTGGTTCAAAAGTTGATCTATACCATGTAATGATATATATGTTCCTCAGTCCTACTGATGAGCTAGGTGAAAATCAGCTTTTCAGTGGTCAGAAAACAGTTCAGTTAGTGCTATTAGGTTTGGCTCTTATAGCTGTACCATGGATGCTGCTTCCAAAGCCTTTCCTCATGAAGAAGCAACATGAAGCTCGTCACCAAGGCCAATCATATGCTCTACTTGAGAGCACTGAGGAGAGTTTGCAAGTGAATTCAAACCATGATGCCCATGGTCATGAGGAGTTTGAATTTAGTGAAATTTTTGTACATCAACTCATACACACAATAGAGTTTGTACTTGGAGCGGTCTCAAATACAGCTTCCTATCTTCGACTATGGGCCCTAAGTCTTGCTCATTCAGAATTATCCAGTGTGTTCTATGACAAGGTTCTCGTAATGGCGTTTGGGTTCAACAATTGGGTTATACGTATTGTGGGCATCTTGGTCTTCGTTTGCGCCACTGTTGGTGTTTTGCTACTGATGGAAACTCTCAGTGCTTTCCTTCATGCTTTGCGACTTCACTGGGTGGAATTCCAAAACAAGTTTTACGAGGGAGATGGTTACAAGTTCTATCCATTCTCATTTGTATTGCATGACGATGAAGACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000325 GO:0000331 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006882 GO:0006885 GO:0006897 GO:0006909 GO:0006911 GO:0007035 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009536 GO:0009678 GO:0009705 GO:0009941 GO:0009987 GO:0010008 GO:0010324 GO:0012505 GO:0012506 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019725 GO:0019829 GO:0019899 GO:0022607 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030139 GO:0030641 GO:0030659 GO:0030666 GO:0030670 GO:0031090 GO:0031164 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032009 GO:0032119 GO:0032991 GO:0033176 GO:0034220 GO:0034622 GO:0034641 GO:0034654 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045335 GO:0045735 GO:0045851 GO:0046034 GO:0046390 GO:0046483 GO:0046916 GO:0046961 GO:0048878 GO:0050801 GO:0051117 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051452 GO:0051453 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0055086 GO:0061024 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071704 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098657 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099024 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04142 ko04145 ko04721 ko04966 ko05110 ko05120 ko05152 ko05165 ko05323 map00190 map01100 map04142 map04145 map04721 map04966 map05110 map05120 map05152 map05165 map05323
Pfam Domains
Protein Families
V_ATPase_I

Protein Analysis

792

Amino Acids

90.05

Weight (kDa)

6.31

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
V_ATPase_I PF01496 34 - 87 5.5e-12 V-type ATPase 116kDa subunit family
V_ATPase_I PF01496 91 - 784 7.4e-276 V-type ATPase 116kDa subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 2072
AciI CCGC 4 cut(s) 81, 1000, 1081, 2072
AclI AACGTT 1 cut(s) 1647
AclWI GGATC 7 cut(s) 33, 461, 602, 976, 1496, 1509, 1525
AcoI YGGCCR 2 cut(s) 1134, 1318
AcsI RAATTY 6 cut(s) 690, 1271, 1978, 2015, 2025, 2297
AcyI GRCGYC 1 cut(s) 423
AdeI CACNNNGTG 1 cut(s) 2293
AfaI GTAC 3 cut(s) 1869, 2034, 2064
AfiI CCNNNNNNNGG 2 cut(s) 343, 617
AgeI ACCGGT 1 cut(s) 500
AjnI CCWGG 4 cut(s) 380, 426, 984, 1041
Alw21I GWGCWC 1 cut(s) 1958
Alw26I GTCTC 2 cut(s) 100, 2080
AlwI GGATC 7 cut(s) 33, 461, 602, 976, 1496, 1509, 1525
AlwNI CAGNNNCTG 1 cut(s) 1048
AoxI GGCC 6 cut(s) 115, 582, 1134, 1318, 1930, 2106
ApaI GGGCCC 1 cut(s) 2110
ApeKI GCWGC 7 cut(s) 49, 375, 388, 997, 1004, 1531, 1879
ApoI RAATTY 6 cut(s) 690, 1271, 1978, 2015, 2025, 2297
ArsI GACNNNNNNTTYG 2 cut(s) 1234, 1266
AseI ATTAAT 1 cut(s) 759
AsiGI ACCGGT 1 cut(s) 500
AspA2I CCTAGG 1 cut(s) 512
AspLEI GCGC 2 cut(s) 380, 2225
AspS9I GGNCC 7 cut(s) 226, 448, 733, 1478, 1582, 2106, 2107
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 9 cut(s) 82, 206, 362, 428, 490, 625, 1220, 1811, 1916
AvaII GGWCC 5 cut(s) 226, 448, 733, 1478, 1582
AvrII CCTAGG 1 cut(s) 512
BaeGI GKGCMC 1 cut(s) 2110
BalI TGGCCA 1 cut(s) 1136
BamHI GGATCC 1 cut(s) 1501
BanII GRGCYC 2 cut(s) 155, 2110
BbsI GAAGAC 2 cut(s) 274, 2206
Bbv12I GWGCWC 1 cut(s) 1958
BbvCI CCTCAGC 2 cut(s) 948, 1668
BbvI GCAGC 7 cut(s) 61, 387, 400, 1009, 1016, 1518, 1866
BccI CCATC 7 cut(s) 16, 80, 193, 478, 1300, 2242, 2318
BceAI ACGGC 3 cut(s) 569, 1305, 1413
BcgI CGANNNNNNTGC 2 cut(s) 1502, 1536
BciT130I CCWGG 4 cut(s) 382, 428, 986, 1043
BciVI GTATCC 1 cut(s) 424
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 2 cut(s) 100, 2080
BfaI CTAG 5 cut(s) 264, 296, 513, 558, 1796
BfmI CTRYAG 1 cut(s) 798
BfoI RGCGCY 1 cut(s) 381
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 7 cut(s) 50, 376, 389, 998, 1005, 1532, 1880
BlnI CCTAGG 1 cut(s) 512
BlpI GCTNAGC 2 cut(s) 914, 1414
BlsI GCNGC 7 cut(s) 51, 377, 390, 999, 1006, 1533, 1881
Bme1390I CCNGG 5 cut(s) 382, 428, 821, 986, 1043
Bme18I GGWCC 5 cut(s) 226, 448, 733, 1478, 1582
BmgT120I GGNCC 7 cut(s) 226, 448, 733, 1478, 1582, 2106, 2107
BmiI GGNNCC 8 cut(s) 42, 709, 866, 1479, 1480, 1503, 1655, 2108
BmrFI CCNGG 5 cut(s) 382, 428, 821, 986, 1043
BmrI ACTGGG 1 cut(s) 2299
BmsI GCATC 7 cut(s) 688, 980, 1111, 1438, 1866, 1981, 2214
BmuI ACTGGG 1 cut(s) 2299
BpiI GAAGAC 2 cut(s) 274, 2206
BplI GAGNNNNNCTC 2 cut(s) 1370, 1402
BpmI CTGGAG 1 cut(s) 681
Bpu10I CCTNAGC 2 cut(s) 948, 1668
Bpu1102I GCTNAGC 2 cut(s) 914, 1414
BpuEI CTTGAG 2 cut(s) 1008, 1970
BpuMI CCSGG 1 cut(s) 821
BsaAI YACGTR 1 cut(s) 2195
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 2080
BsaJI CCNNGG 7 cut(s) 112, 426, 512, 1594, 1871, 1927, 1996
BsaWI WCCGGW 2 cut(s) 500, 610
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 617
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 6 cut(s) 418, 1366, 1657, 1738, 2136, 2294
Bse3DI GCAATG 2 cut(s) 866, 992
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 4 cut(s) 382, 428, 986, 1043
BseDI CCNNGG 7 cut(s) 112, 426, 512, 1594, 1871, 1927, 1996
BseGI GGATG 3 cut(s) 14, 66, 1881
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 343, 617
BseMI GCAATG 2 cut(s) 866, 992
BseMII CTCAG 8 cut(s) 191, 720, 939, 1428, 1682, 1792, 1950, 2272
BseNI ACTGG 6 cut(s) 418, 1366, 1657, 1738, 2136, 2294
BseRI GAGGAG 3 cut(s) 110, 1976, 2021
BseSI GKGCMC 1 cut(s) 2110
BseXI GCAGC 7 cut(s) 61, 387, 400, 1009, 1016, 1518, 1866
BshFI GGCC 6 cut(s) 117, 584, 1136, 1320, 1932, 2108
BshTI ACCGGT 1 cut(s) 500
BsiHKAI GWGCWC 1 cut(s) 1958
BsiSI CCGG 3 cut(s) 501, 611, 820
BslFI GGGAC 4 cut(s) 1230, 1376, 1464, 1649
BslI CCNNNNNNNGG 2 cut(s) 343, 617
BsmAI GTCTC 2 cut(s) 100, 2080
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 4 cut(s) 1230, 1376, 1464, 1649
BsnI GGCC 6 cut(s) 117, 584, 1136, 1320, 1932, 2108
Bso31I GGTCTC 1 cut(s) 2080
Bsp120I GGGCCC 1 cut(s) 2106
Bsp1286I GDGCHC 3 cut(s) 155, 1958, 2110
Bsp1407I TGTACA 1 cut(s) 2032
Bsp1720I GCTNAGC 2 cut(s) 914, 1414
Bsp19I CCATGG 2 cut(s) 1871, 1996
BspACI CCGC 4 cut(s) 81, 1000, 1081, 2072
BspANI GGCC 6 cut(s) 117, 584, 1136, 1320, 1932, 2108
BspCNI CTCAG 8 cut(s) 190, 721, 940, 1427, 1681, 1791, 1951, 2271
BspHI TCATGA 2 cut(s) 1899, 2002
BspLI GGNNCC 8 cut(s) 42, 709, 866, 1479, 1480, 1503, 1655, 2108
BspPI GGATC 7 cut(s) 33, 461, 602, 976, 1496, 1509, 1525
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 2080
BsrBI CCGCTC 1 cut(s) 2072
BsrDI GCAATG 2 cut(s) 866, 992
BsrFI RCCGGY 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 2032
BsrI ACTGG 6 cut(s) 418, 1366, 1657, 1738, 2136, 2294
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 7 cut(s) 112, 426, 512, 1594, 1871, 1927, 1996
BssNI GRCGYC 1 cut(s) 423
BssT1I CCWWGG 5 cut(s) 512, 1594, 1871, 1927, 1996
Bst2UI CCWGG 4 cut(s) 382, 428, 986, 1043
Bst4CI ACNGT 6 cut(s) 94, 438, 1404, 1688, 1831, 2230
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 423
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstAUI TGTACA 1 cut(s) 2032
BstBAI YACGTR 1 cut(s) 2195
BstC8I GCNNGC 5 cut(s) 205, 582, 1002, 1426, 1462
BstDSI CCRYGG 2 cut(s) 1871, 1996
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 3 cut(s) 14, 66, 1881
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 2 cut(s) 380, 2225
BstMAI GTCTC 2 cut(s) 100, 2080
BstMWI GCNNNNNNNGC 8 cut(s) 49, 114, 337, 707, 1157, 1457, 1862, 1888
BstNI CCWGG 4 cut(s) 382, 428, 986, 1043
BstNSI RCATGY 1 cut(s) 1428
BstSCI CCNGG 5 cut(s) 380, 426, 819, 984, 1041
BstSFI CTRYAG 1 cut(s) 798
BstSLI GKGCMC 1 cut(s) 2110
BstSNI TACGTA 1 cut(s) 2195
BstV1I GCAGC 7 cut(s) 61, 387, 400, 1009, 1016, 1518, 1866
BstV2I GAAGAC 2 cut(s) 274, 2206
BstX2I RGATCY 5 cut(s) 25, 607, 981, 1501, 1517
BstYI RGATCY 5 cut(s) 25, 607, 981, 1501, 1517
BsuI GTATCC 1 cut(s) 424
BsuRI GGCC 6 cut(s) 117, 584, 1136, 1320, 1932, 2108
BtgI CCRYGG 2 cut(s) 1871, 1996
BtsCI GGATG 3 cut(s) 14, 66, 1881
BtsI GCAGTG 1 cut(s) 1531
BtsIMutI CAGTG 8 cut(s) 1359, 1531, 1822, 1956, 2143, 2226, 2266, 2287
Cac8I GCNNGC 5 cut(s) 205, 582, 1002, 1426, 1462
CaiI CAGNNNCTG 1 cut(s) 1048
CciI TCATGA 2 cut(s) 1899, 2002
CfoI GCGC 2 cut(s) 380, 2225
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 7 cut(s) 226, 448, 733, 1478, 1582, 2106, 2107
CseI GACGC 1 cut(s) 431
Csp6I GTAC 3 cut(s) 1868, 2033, 2063
CspAI ACCGGT 1 cut(s) 500
CviQI GTAC 3 cut(s) 1868, 2033, 2063
DraIII CACNNNGTG 1 cut(s) 2293
EaeI YGGCCR 2 cut(s) 1134, 1318
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 70
Eco105I TACGTA 1 cut(s) 2195
Eco130I CCWWGG 5 cut(s) 512, 1594, 1871, 1927, 1996
Eco24I GRGCYC 2 cut(s) 155, 2110
Eco31I GGTCTC 1 cut(s) 2080
Eco32I GATATC 1 cut(s) 1297
Eco47I GGWCC 5 cut(s) 226, 448, 733, 1478, 1582
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO109I RGGNCCY 3 cut(s) 733, 1478, 2107
EcoRI GAATTC 2 cut(s) 1978, 2297
EcoRII CCWGG 4 cut(s) 380, 426, 984, 1041
EcoRV GATATC 1 cut(s) 1297
EcoT14I CCWWGG 5 cut(s) 512, 1594, 1871, 1927, 1996
EcoT22I ATGCAT 2 cut(s) 1126, 1426
EcoT38I GRGCYC 2 cut(s) 155, 2110
ErhI CCWWGG 5 cut(s) 512, 1594, 1871, 1927, 1996
Esp3I CGTCTC 1 cut(s) 100
FaqI GGGAC 4 cut(s) 1230, 1376, 1464, 1649
FauI CCCGC 1 cut(s) 993
FauNDI CATATG 3 cut(s) 1126, 1420, 1939
Fnu4HI GCNGC 7 cut(s) 50, 376, 389, 998, 1005, 1532, 1880
FokI GGATG 3 cut(s) 21, 53, 1888
FriOI GRGCYC 2 cut(s) 155, 2110
Fsp4HI GCNGC 7 cut(s) 50, 376, 389, 998, 1005, 1532, 1880
FspBI CTAG 5 cut(s) 264, 296, 513, 558, 1796
GlaI GCGC 2 cut(s) 379, 2224
GluI GCNGC 7 cut(s) 50, 376, 389, 998, 1005, 1532, 1880
GsuI CTGGAG 1 cut(s) 681
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 6 cut(s) 117, 584, 1136, 1320, 1932, 2108
HapII CCGG 3 cut(s) 501, 611, 820
HgaI GACGC 1 cut(s) 431
HhaI GCGC 2 cut(s) 380, 2225
Hin1I GRCGYC 1 cut(s) 423
Hin6I GCGC 2 cut(s) 378, 2223
HinP1I GCGC 2 cut(s) 378, 2223
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 8 cut(s) 77, 401, 455, 541, 595, 682, 958, 1013
HpaII CCGG 3 cut(s) 501, 611, 820
HphI GGTGA 9 cut(s) 82, 206, 362, 428, 490, 625, 1220, 1811, 1916
Hpy166II GTNNAC 5 cut(s) 448, 743, 776, 1095, 1731
Hpy188I TCNGA 9 cut(s) 40, 145, 162, 180, 784, 1644, 1713, 1824, 2128
Hpy188III TCNNGA 9 cut(s) 58, 264, 296, 660, 1109, 1145, 1499, 1900, 2003
Hpy8I GTNNAC 5 cut(s) 448, 743, 776, 1095, 1731
HpyAV CCTTC 2 cut(s) 874, 2279
HpyCH4III ACNGT 6 cut(s) 94, 438, 1404, 1688, 1831, 2230
HpyCH4IV ACGT 3 cut(s) 214, 1647, 2194
HpyF10VI GCNNNNNNNGC 8 cut(s) 49, 114, 337, 707, 1157, 1457, 1862, 1888
HpySE526I ACGT 3 cut(s) 214, 1647, 2194
Hsp92I GRCGYC 1 cut(s) 423
HspAI GCGC 2 cut(s) 378, 2223
KflI GGGWCCC 1 cut(s) 1478
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 4 cut(s) 40, 707, 1031, 2069
Lsp1109I GCAGC 7 cut(s) 61, 387, 400, 1009, 1016, 1518, 1866
LweI GCATC 7 cut(s) 688, 980, 1111, 1438, 1866, 1981, 2214
MaeI CTAG 5 cut(s) 264, 296, 513, 558, 1796
MaeII ACGT 3 cut(s) 214, 1647, 2194
MaeIII GTNAC 8 cut(s) 601, 613, 716, 766, 831, 925, 1922, 2327
MbiI CCGCTC 1 cut(s) 2072
MfeI CAATTG 1 cut(s) 2182
MflI RGATCY 5 cut(s) 25, 607, 981, 1501, 1517
MhlI GDGCHC 3 cut(s) 155, 1958, 2110
MlsI TGGCCA 1 cut(s) 1136
MluNI TGGCCA 1 cut(s) 1136
MlyI GAGTC 3 cut(s) 86, 967, 1007
MmeI TCCRAC 2 cut(s) 18, 1009
Mox20I TGGCCA 1 cut(s) 1136
Mph1103I ATGCAT 2 cut(s) 1126, 1426
MscI TGGCCA 1 cut(s) 1136
MseI TTAA 9 cut(s) 138, 183, 483, 687, 759, 906, 1470, 1541, 1682
MslI CAYNNNNRTG 5 cut(s) 414, 1304, 1423, 2001, 2364
Msp20I TGGCCA 1 cut(s) 1136
MspA1I CMGCKG 3 cut(s) 368, 1000, 1672
MspI CCGG 3 cut(s) 501, 611, 820
MspR9I CCNGG 5 cut(s) 382, 428, 821, 986, 1043
MunI CAATTG 1 cut(s) 2182
MvaI CCWGG 4 cut(s) 382, 428, 986, 1043
MwoI GCNNNNNNNGC 8 cut(s) 49, 114, 337, 707, 1157, 1457, 1862, 1888
NciI CCSGG 1 cut(s) 821
NcoI CCATGG 2 cut(s) 1871, 1996
NdeI CATATG 3 cut(s) 1126, 1420, 1939
NlaIV GGNNCC 8 cut(s) 42, 709, 866, 1479, 1480, 1503, 1655, 2108
NmeAIII GCCGAG 2 cut(s) 84, 93
NmuCI GTSAC 2 cut(s) 613, 1922
NsiI ATGCAT 2 cut(s) 1126, 1426
NspI RCATGY 1 cut(s) 1428
PaeI GCATGC 1 cut(s) 1428
PagI TCATGA 2 cut(s) 1899, 2002
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 211, 2370
PfeI GAWTC 5 cut(s) 401, 455, 541, 595, 682
PfoI TCCNGGA 1 cut(s) 984
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 7 cut(s) 51, 377, 390, 999, 1006, 1533, 1881
PleI GAGTC 3 cut(s) 85, 966, 1007
PpsI GAGTC 3 cut(s) 85, 966, 1007
Ppu21I YACGTR 1 cut(s) 2195
PpuMI RGGWCCY 2 cut(s) 733, 1478
PshBI ATTAAT 1 cut(s) 759
Psp1406I AACGTT 1 cut(s) 1647
Psp5II RGGWCCY 2 cut(s) 733, 1478
Psp6I CCWGG 4 cut(s) 380, 426, 984, 1041
PspGI CCWGG 4 cut(s) 380, 426, 984, 1041
PspN4I GGNNCC 8 cut(s) 42, 709, 866, 1479, 1480, 1503, 1655, 2108
PspOMI GGGCCC 1 cut(s) 2106
PspPI GGNCC 7 cut(s) 226, 448, 733, 1478, 1582, 2106, 2107
PspPPI RGGWCCY 2 cut(s) 733, 1478
PstNI CAGNNNCTG 1 cut(s) 1048
PsuI RGATCY 5 cut(s) 25, 607, 981, 1501, 1517
PvuII CAGCTG 2 cut(s) 368, 1672
RsaI GTAC 3 cut(s) 1869, 2034, 2064
RsaNI GTAC 3 cut(s) 1868, 2033, 2063
RseI CAYNNNNRTG 5 cut(s) 414, 1304, 1423, 2001, 2364
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 9 cut(s) 138, 183, 483, 687, 759, 906, 1470, 1541, 1682
SatI GCNGC 7 cut(s) 50, 376, 389, 998, 1005, 1532, 1880
Sau96I GGNCC 7 cut(s) 226, 448, 733, 1478, 1582, 2106, 2107
SchI GAGTC 3 cut(s) 86, 967, 1007
ScrFI CCNGG 5 cut(s) 382, 428, 821, 986, 1043
SduI GDGCHC 3 cut(s) 155, 1958, 2110
SfaNI GCATC 7 cut(s) 688, 980, 1111, 1438, 1866, 1981, 2214
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 5 cut(s) 226, 448, 733, 1478, 1582
SmiMI CAYNNNNRTG 5 cut(s) 414, 1304, 1423, 2001, 2364
SmlI CTYRAG 2 cut(s) 1023, 1949
SmoI CTYRAG 2 cut(s) 1023, 1949
SnaBI TACGTA 1 cut(s) 2195
SphI GCATGC 1 cut(s) 1428
SsiI CCGC 4 cut(s) 81, 1000, 1081, 2072
SspMI CTAG 5 cut(s) 264, 296, 513, 558, 1796
StyD4I CCNGG 5 cut(s) 380, 426, 819, 984, 1041
StyI CCWWGG 5 cut(s) 512, 1594, 1871, 1927, 1996
TaaI ACNGT 6 cut(s) 94, 438, 1404, 1688, 1831, 2230
TaiI ACGT 3 cut(s) 217, 1650, 2197
TaqI TCGA 5 cut(s) 75, 550, 921, 974, 2098
TatI WGTACW 2 cut(s) 2032, 2062
TfiI GAWTC 5 cut(s) 401, 455, 541, 595, 682
Tru1I TTAA 9 cut(s) 138, 183, 483, 687, 759, 906, 1470, 1541, 1682
Tru9I TTAA 9 cut(s) 138, 183, 483, 687, 759, 906, 1470, 1541, 1682
TscAI CASTG 8 cut(s) 1366, 1531, 1822, 1963, 2143, 2233, 2266, 2294
TseFI GTSAC 2 cut(s) 613, 1922
TseI GCWGC 7 cut(s) 49, 375, 388, 997, 1004, 1531, 1879
Tsp45I GTSAC 2 cut(s) 613, 1922
TspRI CASTG 8 cut(s) 1366, 1531, 1822, 1963, 2143, 2233, 2266, 2294
VpaK11BI GGWCC 5 cut(s) 226, 448, 733, 1478, 1582
VspI ATTAAT 1 cut(s) 759
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 6 cut(s) 690, 1271, 1978, 2015, 2025, 2297
XbaI TCTAGA 2 cut(s) 263, 295
XceI RCATGY 1 cut(s) 1428
XcmI CCANNNNNNNNNTGG 2 cut(s) 1592, 1994
XmaJI CCTAGG 1 cut(s) 512
XspI CTAG 5 cut(s) 264, 296, 513, 558, 1796
Zsp2I ATGCAT 2 cut(s) 1126, 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.