Rorug06G0311400

Essential component of the vacuolar proton pump (V- ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
46259498 .. 46260785
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0311400.1

Sequence Viewer

Length: 513 bp
ATGTACAGATTACAGTTCTATGAGCATTTTGTTGTACCTTTTATGCAAGATGATGATGAAGATTATAACAATGATGAAGATGGCAGACTGAGCAAATCCGGAAACGAGTTAAAGAAGCTGCTTGGGCGCCTGAATAAGTCAGATACAGAGGATGACGATGACGCTGACAATGACAATGCCGATGGGGATGATGATATGGATGATGTTATTGACAAGGGTCCCCTAAAAGCAGTGCCTTCTGGAACTTCTCAACAACCCCATCTACCTCCAAGGGAAAGAGAAAAAGGTAAAAAACCTTCTGTCAAAGAAGAGCCTGCATCTGCTAGTCCTGTCACTGAAGAAGAAATCAGGGCTGTTTTGATGCAACAGTTACCAATCACCGAGAAGGAGGTTTTTACAGCAATCCTGAAGAGAATGCACTCTCAGAAAACAATTTCCAGGAAACCAAAAGACAAAAGAACCGGTTATTTTGTTGTACTGAGAGAAAGTGAATTGTATATGGCCTTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000325 GO:0000331 GO:0003674 GO:0003824 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006882 GO:0006885 GO:0006897 GO:0006909 GO:0006911 GO:0007035 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009536 GO:0009678 GO:0009705 GO:0009941 GO:0009987 GO:0010008 GO:0010324 GO:0012505 GO:0012506 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016469 GO:0016471 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019725 GO:0019829 GO:0019899 GO:0022607 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030003 GO:0030004 GO:0030139 GO:0030641 GO:0030659 GO:0030666 GO:0030670 GO:0031090 GO:0031164 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032009 GO:0032119 GO:0032991 GO:0033176 GO:0034220 GO:0034622 GO:0034641 GO:0034654 GO:0036442 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043181 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045335 GO:0045735 GO:0045851 GO:0046034 GO:0046390 GO:0046483 GO:0046916 GO:0046961 GO:0048878 GO:0050801 GO:0051117 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051452 GO:0051453 GO:0051641 GO:0051651 GO:0055065 GO:0055067 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0055086 GO:0061024 GO:0065003 GO:0065007 GO:0065008 GO:0070070 GO:0070071 GO:0070072 GO:0071704 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0097708 GO:0098588 GO:0098655 GO:0098657 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0098852 GO:0099024 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.48

Weight (kDa)

4.8

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 98
AcuI CTGAAG 2 cut(s) 357, 428
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 3 cut(s) 5, 36, 477
AgeI ACCGGT 1 cut(s) 461
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Aor13HI TCCGGA 1 cut(s) 98
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 1 cut(s) 118
AsiGI ACCGGT 1 cut(s) 461
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 126
BarI GAAGNNNNNNTAC 3 cut(s) 280, 312, 488
BbvI GCAGC 1 cut(s) 105
BccI CCATC 3 cut(s) 74, 176, 267
BciT130I CCWGG 1 cut(s) 439
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 130
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 3 cut(s) 128, 219, 220
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 326, 351
BoxI GACNNNNGTC 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 269
BsaWI WCCGGW 2 cut(s) 98, 461
Bse118I RCCGGY 1 cut(s) 461
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 269
BseGI GGATG 3 cut(s) 157, 193, 205
BseMII CTCAG 3 cut(s) 80, 437, 470
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 503
BshNI GGYRCC 1 cut(s) 126
BshTI ACCGGT 1 cut(s) 461
BsiSI CCGG 2 cut(s) 99, 462
BslFI GGGAC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 1 cut(s) 503
Bsp13I TCCGGA 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 3
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 3 cut(s) 81, 436, 471
BspEI TCCGGA 1 cut(s) 98
BspLI GGNNCC 3 cut(s) 128, 219, 220
BspQI GCTCTTC 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 461
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 269
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 15, 369
Bst6I CTCTTC 2 cut(s) 303, 404
BstACI GRCGYC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 89, 423, 479
BstF5I GGATG 3 cut(s) 157, 193, 205
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 90, 124
BstNI CCWGG 1 cut(s) 439
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 1 cut(s) 503
BtsCI GGATG 3 cut(s) 157, 193, 205
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 237, 333
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 170
Csp6I GTAC 3 cut(s) 4, 35, 476
CspAI ACCGGT 1 cut(s) 461
CviJI RGCY 4 cut(s) 118, 313, 353, 503
CviKI_1 RGCY 4 cut(s) 118, 313, 353, 503
CviQI GTAC 3 cut(s) 4, 35, 476
DdeI CTNAG 3 cut(s) 89, 423, 479
DinI GGCGCC 1 cut(s) 128
Eam1104I CTCTTC 2 cut(s) 303, 404
EarI CTCTTC 2 cut(s) 303, 404
Eco130I CCWWGG 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 357, 428
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 269
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 269
FaiI YATR 7 cut(s) 21, 44, 66, 197, 498, 500, 511
FaqI GGGAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 3 cut(s) 164, 200, 212
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 1 cut(s) 503
HapII CCGG 2 cut(s) 99, 462
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HpaII CCGG 2 cut(s) 99, 462
HphI GGTGA 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 142, 426
Hpy188III TCNNGA 3 cut(s) 99, 240, 406
HpyAV CCTTC 3 cut(s) 246, 306, 379
HpyCH4III ACNGT 2 cut(s) 15, 369
HpyCH4V TGCA 4 cut(s) 46, 317, 364, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 124
HpyF3I CTNAG 3 cut(s) 89, 423, 479
Hsp92I GRCGYC 1 cut(s) 127
HspAI GCGC 1 cut(s) 127
KasI GGCGCC 1 cut(s) 126
KflI GGGWCCC 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 98
LguI GCTCTTC 1 cut(s) 303
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 2 cut(s) 326, 351
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 331, 369
MboII GAAGA 6 cut(s) 71, 89, 320, 350, 353, 421
MluCI AATT 2 cut(s) 432, 491
Mly113I GGCGCC 1 cut(s) 127
MnlI CCTC 3 cut(s) 142, 276, 382
MroI TCCGGA 1 cut(s) 98
MseI TTAA 1 cut(s) 110
MspI CCGG 2 cut(s) 99, 462
MspR9I CCNGG 1 cut(s) 439
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 2 cut(s) 90, 124
NarI GGCGCC 1 cut(s) 127
NlaIV GGNNCC 3 cut(s) 128, 219, 220
NmuCI GTSAC 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 303
PctI GAATGC 1 cut(s) 420
PfoI TCCNGGA 1 cut(s) 437
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 1 cut(s) 120
PluTI GGCGCC 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 218
PshAI GACNNNNGTC 1 cut(s) 216
PsiI TTATAA 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 128, 219, 220
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
RsaI GTAC 3 cut(s) 5, 36, 477
RsaNI GTAC 3 cut(s) 4, 35, 476
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 439
SetI ASST 6 cut(s) 40, 120, 268, 289, 298, 393
SfaNI GCATC 2 cut(s) 326, 351
SfoI GGCGCC 1 cut(s) 128
SinI GGWCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 432, 491
SspDI GGCGCC 1 cut(s) 126
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 15, 369
TasI AATT 2 cut(s) 432, 491
TatI WGTACW 2 cut(s) 3, 475
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 2 cut(s) 237, 340
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 72, 90
TspRI CASTG 2 cut(s) 237, 340
VpaK11BI GGWCC 1 cut(s) 218
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.