Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008180

Physical Location & Seq

Genomic Coordinates Reverse (-)

24809090 .. 24815015

Gene Structure 5926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGTGGGTGCATGTGTCTAAAGATTATGATGTTGTGAAGATAATGAAATCGATGCTGGAGTGTGCAACAAGAAAGGTGTGCAAGTTATCACACGAGGATGTTATTAGGAATCAATTCGAAGTGGTGCTGAACAAGAAGTTTTTACTTGTATTAGATGACGTGTGGAACGAGGCTCCCCATGATTGGGATGACTTCAAGTTACTTTTCAGACTTGCGCATCCCGGGAGCAGGGTTATCGTAACCACTAGGAGTACAACTGTTTCTTCCATTGTTACGTCGAATGGTGACATTTTGTGTTTGGATATCTTGTCTCATGATCACTGTTGGGGCATCATCAAGCACGGTTTAAGAACAAACGTTGAACAGCGTCCAGATTTGAAGGAGATTGGGGTGAAATTGGCAGAAAAATGTAAAGGTGTTCCCTTGGTAGCTAAGGTGATTGGGGATTACTTGCATATCAAATCAGATCAGAGAGAATGGGATAGCCTGCTGAACTGTGACCTTTTGAACTTGGCAGCGGATGATAACAACCTCTATAATGTTCTCAAGCTGAGTTATGATCATTTGCCGGCAGATTTAAAACGTTGTTTTACCTATTGTTCTGTAATTCCTCATTGTCAGAGAGTTAAAGTGCAGGATTTGATTCAGATGTGGGCTGCACAAGGTTTCATTCAAGCTCAAGGAGCAAGAAGAATTGATGAAATAGGAATGGAGTATTTGTTAGTTTCTGCCAACTTCTGCTTATGTGTGGATGATATGTCACGCTTCTTGAATGTGTCTTCAACTGTTCGTCATGTGTGCTTACTATATCAAGTTGATGATTCAGAAGTGTTAGCAGATTTGTTCAAAAAGTGTTGCACATATAAGAAATTGAGGACATTTATGTTGGTTTCCGACTTGGTGCAACCCCCTCGGGGTCTTCTTGAGTCTGAACTCTTTGAAAAGTTTTTTCAATCATTTCATCTGTTAAGGGTTTTAGATTTAAGTGGCAGTGGTATCCGTCGTTTGTCGAACTCGGTTGGAAACAATACATGTCTTCATTATCTCAACCTTTGCGGTACTCGGATCAAAGTTTTACCAGAAGGTGTAGGTAATCTGATTGGATTAGAAACATTTAACCTCCTAGATGGTCCATCTATTGTAGAATGGCCCTCAAACTTTGAGAAGTTGACTAAGCTTCGACACCTTTACTATAATAAGCAGGGTAATGGTAATATGCCAAGAGCATTGGGAAAACTAACGAGGTTGGAAACTTTGCATACATTTGTTGTGAAAAGCGAAGAAGGATATGAAATTGAGGAGCTGAAAGACATGAATTGCCTCTGCGGATCTATTCTTATCAGAGGTCTTGAGAATGTGAAAGATTTTCATAAGGCTAAGGCTGCCTTGTTGGAAAATAAGAAATTTCTTGACAAATTAGAGTTGCAGTGGGCTCAACAAAGAGAGCCAACAGATGAGACAATGAATGTTGATAAAGAAGTACTTCGAGGCCTTAAACCTCATAATAGGTTGACTGAGTTGGAAATAAAAGCCTATCATGGTGCTAGTTTGCCGGATTTGTTGGGCAATGCCTCTTGCAAGCTTGAGAAGCTTGTCATTGATTCGTGTGTAGAATTGAGATTCAGAGCTGCCCTAAGCTTGTATCATTGCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

551

Amino Acids

62.93

Weight (kDa)

7.01

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	1 - 113	6.8e-18	NB-ARC domain
WHD_DRP	PF23559	204 - 244	2.1e-06	Disease resistance protein Winged helix domain
LRR_14	PF23598	317 - 533	3.4e-22	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	432 - 539	1.2e-24	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001
rosa_multiflora	Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200180
rosa_rugosa	Rorug06G0036900 Rorug06G0038600
rosa_samantha	Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
AciI	CCGC	3 cut(s)	518, 1056, 1326
AclI	AACGTT	2 cut(s)	357, 583
AclWI	GGATC	2 cut(s)	1073, 1336
AcsI	RAATTY	1 cut(s)	1403
AfaI	GTAC	3 cut(s)	253, 1060, 1482
AfiI	CCNNNNNNNGG	4 cut(s)	183, 184, 228, 914
AflIII	ACRYGT	2 cut(s)	159, 1031
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	9 cut(s)	431, 550, 677, 1177, 1303, 1582, 1591, 1628, 1638
AluI	AGCT	9 cut(s)	431, 550, 677, 1177, 1303, 1582, 1591, 1628, 1638
Alw26I	GTCTC	2 cut(s)	315, 1451
AlwI	GGATC	2 cut(s)	1073, 1336
Ama87I	CYCGRG	2 cut(s)	221, 912
AoxI	GGCC	2 cut(s)	1148, 1489
ApeKI	GCWGC	4 cut(s)	515, 656, 1382, 1628
ApoI	RAATTY	1 cut(s)	1403
Asp700I	GAANNNNTTC	2 cut(s)	113, 1482
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	2 cut(s)	1130, 1149
AsuC2I	CCSGG	2 cut(s)	222, 223
AsuHPI	GGTGA	3 cut(s)	296, 403, 448
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	2 cut(s)	221, 912
AvaII	GGWCC	1 cut(s)	1130
BanII	GRGCYC	1 cut(s)	1435
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	3 cut(s)	771, 911, 1028
BbvI	GCAGC	4 cut(s)	527, 643, 1369, 1615
BccI	CCATC	2 cut(s)	1121, 1141
BcgI	CGANNNNNNTGC	4 cut(s)	217, 251, 893, 927
BciVI	GTATCC	1 cut(s)	1007
BclI	TGATCA	2 cut(s)	316, 559
BcnI	CCSGG	2 cut(s)	222, 223
BcoDI	GTCTC	2 cut(s)	315, 1451
BfaI	CTAG	3 cut(s)	246, 1124, 1545
BfuI	GTATCC	1 cut(s)	1007
BisI	GCNGC	4 cut(s)	516, 657, 1383, 1629
BlsI	GCNGC	4 cut(s)	517, 658, 1384, 1630
BmcAI	AGTACT	1 cut(s)	1482
Bme1390I	CCNGG	2 cut(s)	222, 223
Bme18I	GGWCC	1 cut(s)	1130
BmeT110I	CYCGRG	2 cut(s)	221, 912
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	1130, 1149
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	222, 223
BmsI	GCATC	3 cut(s)	42, 226, 339
BpiI	GAAGAC	3 cut(s)	771, 911, 1028
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	3 cut(s)	432, 1377, 1634
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	5 cut(s)	530, 663, 944, 1370, 1604
BpuMI	CCSGG	2 cut(s)	222, 223
Bsa29I	ATCGAT	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	221, 423, 911
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 184, 228, 914
Bse118I	RCCGGY	1 cut(s)	568
Bse3DI	GCAATG	2 cut(s)	1573, 1645
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	221, 423, 911
BseGI	GGATG	5 cut(s)	103, 193, 217, 526, 757
BseLI	CCNNNNNNNGG	4 cut(s)	183, 184, 228, 914
BseMI	GCAATG	2 cut(s)	1573, 1645
BseMII	CTCAG	2 cut(s)	542, 1506
BseRI	GAGGAG	1 cut(s)	1313
BseXI	GCAGC	4 cut(s)	527, 643, 1369, 1615
BsgI	GTGCAG	2 cut(s)	642, 653
BshFI	GGCC	2 cut(s)	1150, 1491
BshVI	ATCGAT	1 cut(s)	50
BsiHKCI	CYCGRG	2 cut(s)	221, 912
BsiSI	CCGG	3 cut(s)	222, 569, 1553
BslI	CCNNNNNNNGG	4 cut(s)	183, 184, 228, 914
BsmAI	GTCTC	2 cut(s)	315, 1451
BsnI	GGCC	2 cut(s)	1150, 1491
BsoBI	CYCGRG	2 cut(s)	221, 912
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	1435
Bsp143I	GATC	5 cut(s)	316, 466, 559, 1065, 1328
BspACI	CCGC	3 cut(s)	518, 1056, 1326
BspANI	GGCC	2 cut(s)	1150, 1491
BspCNI	CTCAG	2 cut(s)	543, 1507
BspDI	ATCGAT	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	2 cut(s)	1073, 1336
BspT104I	TTCGAA	1 cut(s)	117
BsrDI	GCAATG	2 cut(s)	1573, 1645
BsrFI	RCCGGY	1 cut(s)	568
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	3 cut(s)	221, 423, 911
BssMI	GATC	5 cut(s)	316, 466, 559, 1065, 1328
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	92
Bst4CI	ACNGT	5 cut(s)	259, 323, 344, 497, 787
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	3 cut(s)	488, 570, 1580
BstDEI	CTNAG	6 cut(s)	432, 551, 1173, 1377, 1515, 1634
BstF5I	GGATG	5 cut(s)	103, 193, 217, 526, 757
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	5 cut(s)	319, 469, 562, 1068, 1331
BstMAI	GTCTC	2 cut(s)	315, 1451
BstMBI	GATC	5 cut(s)	316, 466, 559, 1065, 1328
BstMWI	GCNNNNNNNGC	3 cut(s)	683, 1382, 1588
BstNSI	RCATGY	2 cut(s)	14, 1035
BstSCI	CCNGG	2 cut(s)	220, 221
BstV1I	GCAGC	4 cut(s)	527, 643, 1369, 1615
BstV2I	GAAGAC	3 cut(s)	771, 911, 1028
BstX2I	RGATCY	1 cut(s)	1328
BstYI	RGATCY	1 cut(s)	1328
Bsu15I	ATCGAT	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1007
BsuRI	GGCC	2 cut(s)	1150, 1491
BsuTUI	ATCGAT	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	5 cut(s)	103, 193, 217, 526, 757
BtsI	GCAGTG	2 cut(s)	997, 1433
BtsIMutI	CAGTG	3 cut(s)	319, 997, 1433
Cac8I	GCNNGC	3 cut(s)	488, 570, 1580
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	1130, 1149
Cfr9I	CCCGGG	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	50
CseI	GACGC	1 cut(s)	356
Csp6I	GTAC	3 cut(s)	252, 1059, 1481
CviAII	CATG	7 cut(s)	11, 179, 314, 794, 1032, 1312, 1538
CviQI	GTAC	3 cut(s)	252, 1059, 1481
DdeI	CTNAG	6 cut(s)	432, 551, 1173, 1377, 1515, 1634
DpnI	GATC	5 cut(s)	318, 468, 561, 1067, 1330
DpnII	GATC	5 cut(s)	316, 466, 559, 1065, 1328
DraI	TTTAAA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	423
Eco147I	AGGCCT	1 cut(s)	1491
Eco24I	GRGCYC	1 cut(s)	1435
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	1130
Eco88I	CYCGRG	2 cut(s)	221, 912
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	1435
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	7 cut(s)	14, 182, 317, 797, 1035, 1315, 1541
FalI	AAGNNNNNCTT	4 cut(s)	1370, 1402, 1467, 1499
FatI	CATG	7 cut(s)	10, 178, 313, 793, 1031, 1311, 1537
FbaI	TGATCA	2 cut(s)	316, 559
Fnu4HI	GCNGC	4 cut(s)	516, 657, 1383, 1629
FokI	GGATG	5 cut(s)	110, 200, 204, 533, 764
FriOI	GRGCYC	1 cut(s)	1435
Fsp4HI	GCNGC	4 cut(s)	516, 657, 1383, 1629
FspBI	CTAG	3 cut(s)	246, 1124, 1545
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	4 cut(s)	516, 657, 1383, 1629
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	1150, 1491
HapII	CCGG	3 cut(s)	222, 569, 1553
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	7 cut(s)	14, 182, 317, 797, 1035, 1315, 1541
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	1170, 1512
HindII	GTYRAC	2 cut(s)	1170, 1512
HindIII	AAGCTT	4 cut(s)	1175, 1580, 1589, 1636
HinfI	GANTC	6 cut(s)	109, 643, 821, 926, 1601, 1620
HpaII	CCGG	3 cut(s)	222, 569, 1553
HphI	GGTGA	3 cut(s)	296, 403, 448
Hpy166II	GTNNAC	2 cut(s)	1170, 1512
Hpy188III	TCNNGA	6 cut(s)	314, 371, 769, 923, 1349, 1409
Hpy8I	GTNNAC	2 cut(s)	1170, 1512
Hpy99I	CGWCG	2 cut(s)	280, 1005
HpyAV	CCTTC	3 cut(s)	373, 1076, 1277
HpyCH4III	ACNGT	5 cut(s)	259, 323, 344, 497, 787
HpyCH4IV	ACGT	4 cut(s)	159, 275, 357, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	683, 1382, 1588
HpyF3I	CTNAG	6 cut(s)	432, 551, 1173, 1377, 1515, 1634
HpySE526I	ACGT	4 cut(s)	159, 275, 357, 583
Hsp92II	CATG	7 cut(s)	14, 182, 317, 797, 1035, 1315, 1541
HspAI	GCGC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	568
KroNI	GCCGGC	1 cut(s)	570
Ksp22I	TGATCA	2 cut(s)	316, 559
Kzo9I	GATC	5 cut(s)	316, 466, 559, 1065, 1328
LmnI	GCTCC	4 cut(s)	178, 225, 683, 1300
Lsp1109I	GCAGC	4 cut(s)	527, 643, 1369, 1615
LweI	GCATC	3 cut(s)	42, 226, 339
MaeI	CTAG	3 cut(s)	246, 1124, 1545
MaeII	ACGT	4 cut(s)	159, 275, 357, 583
MaeIII	GTNAC	6 cut(s)	198, 238, 271, 284, 497, 759
MalI	GATC	5 cut(s)	318, 468, 561, 1067, 1330
MboI	GATC	5 cut(s)	316, 466, 559, 1065, 1328
MboII	GAAGA	7 cut(s)	49, 255, 702, 771, 911, 1028, 1292
MflI	RGATCY	1 cut(s)	1328
MhlI	GDGCHC	1 cut(s)	1435
MlyI	GAGTC	1 cut(s)	935
MmeI	TCCRAC	5 cut(s)	918, 1000, 1227, 1371, 1500
MroNI	GCCGGC	1 cut(s)	568
MroXI	GAANNNNTTC	2 cut(s)	113, 1482
MseI	TTAA	7 cut(s)	347, 578, 627, 968, 983, 1116, 1494
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	3 cut(s)	222, 569, 1553
MspR9I	CCNGG	2 cut(s)	222, 223
MwoI	GCNNNNNNNGC	3 cut(s)	683, 1382, 1588
NaeI	GCCGGC	1 cut(s)	570
NciI	CCSGG	2 cut(s)	222, 223
NdeII	GATC	5 cut(s)	316, 466, 559, 1065, 1328
NgoMIV	GCCGGC	1 cut(s)	568
NlaIII	CATG	7 cut(s)	14, 182, 317, 797, 1035, 1315, 1541
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	3 cut(s)	284, 497, 759
NsbI	TGCGCA	1 cut(s)	216
NspI	RCATGY	2 cut(s)	14, 1035
NspV	TTCGAA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	1491
PciI	ACATGT	1 cut(s)	1031
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	570
PdmI	GAANNNNTTC	2 cut(s)	113, 1482
PfeI	GAWTC	5 cut(s)	109, 643, 821, 1601, 1620
PkrI	GCNGC	4 cut(s)	517, 658, 1384, 1630
PleI	GAGTC	1 cut(s)	934
PpsI	GAGTC	1 cut(s)	934
PscI	ACATGT	1 cut(s)	1031
Psp1406I	AACGTT	2 cut(s)	357, 583
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	1130, 1149
PsuI	RGATCY	1 cut(s)	1328
RsaI	GTAC	3 cut(s)	253, 1060, 1482
RsaNI	GTAC	3 cut(s)	252, 1059, 1481
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	7 cut(s)	347, 578, 627, 968, 983, 1116, 1494
SatI	GCNGC	4 cut(s)	516, 657, 1383, 1629
Sau3AI	GATC	5 cut(s)	316, 466, 559, 1065, 1328
Sau96I	GGNCC	2 cut(s)	1130, 1149
ScaI	AGTACT	1 cut(s)	1482
SchI	GAGTC	1 cut(s)	935
ScrFI	CCNGG	2 cut(s)	222, 223
SduI	GDGCHC	1 cut(s)	1435
SfaNI	GCATC	3 cut(s)	42, 226, 339
SfuI	TTCGAA	1 cut(s)	117
SinI	GGWCC	1 cut(s)	1130
SmaI	CCCGGG	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	5 cut(s)	545, 678, 923, 1349, 1583
SmoI	CTYRAG	5 cut(s)	545, 678, 923, 1349, 1583
SseBI	AGGCCT	1 cut(s)	1491
SsiI	CCGC	3 cut(s)	518, 1056, 1326
SspMI	CTAG	3 cut(s)	246, 1124, 1545
StuI	AGGCCT	1 cut(s)	1491
StyD4I	CCNGG	2 cut(s)	220, 221
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	5 cut(s)	259, 323, 344, 497, 787
TaiI	ACGT	4 cut(s)	162, 278, 360, 586
TaqI	TCGA	6 cut(s)	50, 117, 278, 1010, 1180, 1486
TatI	WGTACW	2 cut(s)	251, 1480
TfiI	GAWTC	5 cut(s)	109, 643, 821, 1601, 1620
Tru1I	TTAA	7 cut(s)	347, 578, 627, 968, 983, 1116, 1494
Tru9I	TTAA	7 cut(s)	347, 578, 627, 968, 983, 1116, 1494
TscAI	CASTG	3 cut(s)	326, 997, 1433
TseFI	GTSAC	3 cut(s)	284, 497, 759
TseI	GCWGC	4 cut(s)	515, 656, 1382, 1628
Tsp45I	GTSAC	3 cut(s)	284, 497, 759
TspDTI	ATGAA	9 cut(s)	59, 658, 714, 950, 1028, 1305, 1328, 1358, 1478
TspGWI	ACGGA	1 cut(s)	989
TspMI	CCCGGG	1 cut(s)	221
TspRI	CASTG	3 cut(s)	326, 997, 1433
VpaK11BI	GGWCC	1 cut(s)	1130
XapI	RAATTY	1 cut(s)	1403
XceI	RCATGY	2 cut(s)	14, 1035
XmaI	CCCGGG	1 cut(s)	221
XmnI	GAANNNNTTC	2 cut(s)	113, 1482
XspI	CTAG	3 cut(s)	246, 1124, 1545
ZrmI	AGTACT	1 cut(s)	1482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.