Rh6BG161900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008180
Physical Location & Seq
Forward (+)
26301539 .. 26302874
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG161900.1

Sequence Viewer

Length: 909 bp
ATGGAGGTAGCGGCTCTTATATTTTCGACGGGCATCTCGTCGTCTATGCTGCAACCGACTGCTGAAAGAATTATAGCTGCAATTTCATCTAGACTAGAGAAAGTTCTTGATTACGGCGATAAACTTCTCAAGTTGGAGGCGAAGATGCTGAAACTTCAATGTCTTGTGGATGATCTGGAAAATAAGCCCGTATCCCGTTGTTGTGGAATGTTGGTAGAGAAGGTGCGGCATAGCCTTCTGGATGCTGATGACTTGTTTAGTTACATTGAAGCGAAAGTGGGCGCGGGTGACATTAACTATATACAGATAAAGCTAAAGCAAGAGGTAACTCATATGCTTGACACTCTCAACTATTGGTGTCAAGAAATTAAAGCCCTTTTCATATCAGAGATAGCCAAGGTGAGTTCCCCACAAACTCTACGAATTAGTGGTGGTTGTTCCGTCATAGATGAGTCTACTGTAATTGGGAGGGAAGACGAGAAGGAGCAAGTGGTTAAATGGTTGTTCAGGAGTCAAAAGGGGGATGATGTTGGTGTGATAGCATTCGTGGGTATGCCCGGCATTGGCAAAACCACAGTAGCTCAATTTATTTACAATGATCCATTAGTTGTTTCTAAATTTGAATTAAGGATGTGGGTGCATGTGTCTAAAGATTATGATGTTGTGAAGATAATGAAATCAATGCTAGAGTGTGCAACAAGAAAGGTGTGCAAGTTATCACACGAGGATGTTATTAGGAATCAATTTGAAGTGGTGCTGAACAAGAAGTTTTTACTTGTATTAGATGACGTGTGGAACGAGGCTCCCCACGATTGGGATGACTTCAAGTTACTTTTTAGACTTGCGCATCCCGGGAGCAGGGTTATCGTTTCATTCAAGCTCAAGGAGCAAGAAGAATTGATGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

302

Amino Acids

34.33

Weight (kDa)

5.94

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 157 - 291 2.8e-26 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 846
AccI GTMKAC 1 cut(s) 455
AccII CGCG 1 cut(s) 284
AciI CCGC 3 cut(s) 11, 226, 284
AclWI GGATC 1 cut(s) 593
AcsI RAATTY 1 cut(s) 617
AfiI CCNNNNNNNGG 4 cut(s) 563, 813, 814, 858
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 6 cut(s) 158, 269, 623, 749, 826, 877
AjiI CACGTC 1 cut(s) 790
AluBI AGCT 4 cut(s) 77, 313, 581, 880
AluI AGCT 4 cut(s) 77, 313, 581, 880
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 851
ApeKI GCWGC 2 cut(s) 49, 77
ApoI RAATTY 1 cut(s) 617
AspLEI GCGC 2 cut(s) 284, 847
AsuC2I CCSGG 3 cut(s) 558, 852, 853
AsuHPI GGTGA 2 cut(s) 299, 412
AvaI CYCGRG 1 cut(s) 851
BauI CACGAG 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 36, 64
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 847, 881
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 3 cut(s) 558, 852, 853
BfaI CTAG 3 cut(s) 90, 95, 686
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 4 cut(s) 12, 50, 78, 227
BlsI GCNGC 4 cut(s) 13, 51, 79, 228
Bme1390I CCNGG 3 cut(s) 558, 852, 853
BmeT110I CYCGRG 1 cut(s) 851
BmgBI CACGTC 1 cut(s) 790
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 3 cut(s) 558, 852, 853
BmsI GCATC 4 cut(s) 42, 135, 232, 856
BpiI GAAGAC 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 113, 866
BpuMI CCSGG 3 cut(s) 558, 852, 853
BsaJI CCNNGG 2 cut(s) 396, 851
Bsc4I CCNNNNNNNGG 4 cut(s) 563, 813, 814, 858
BseDI CCNNGG 2 cut(s) 396, 851
BseGI GGATG 7 cut(s) 175, 247, 529, 636, 733, 823, 847
BseLI CCNNNNNNNGG 4 cut(s) 563, 813, 814, 858
BseXI GCAGC 2 cut(s) 36, 64
Bsh1236I CGCG 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 851
BsiSI CCGG 2 cut(s) 558, 852
BslI CCNNNNNNNGG 4 cut(s) 563, 813, 814, 858
BsmI GAATGC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 851
Bsp143I GATC 2 cut(s) 172, 598
BspACI CCGC 3 cut(s) 11, 226, 284
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 804
BspPI GGATC 1 cut(s) 593
BssECI CCNNGG 2 cut(s) 396, 851
BssMI GATC 2 cut(s) 172, 598
BssSI CACGAG 1 cut(s) 722
BssT1I CCWWGG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 722
Bst4CI ACNGT 2 cut(s) 460, 577
BstF5I GGATG 7 cut(s) 175, 247, 529, 636, 733, 823, 847
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 2 cut(s) 284, 847
BstKTI GATC 2 cut(s) 175, 601
BstMBI GATC 2 cut(s) 172, 598
BstMWI GCNNNNNNNGC 1 cut(s) 886
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 3 cut(s) 556, 850, 851
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 36, 64
BstV2I GAAGAC 1 cut(s) 480
BsuI GTATCC 1 cut(s) 202
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 7 cut(s) 175, 247, 529, 636, 733, 823, 847
CfoI GCGC 2 cut(s) 284, 847
Cfr9I CCCGGG 1 cut(s) 851
CviAII CATG 1 cut(s) 641
DpnI GATC 2 cut(s) 174, 600
DpnII GATC 2 cut(s) 172, 598
Eco130I CCWWGG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 851
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 644
FatI CATG 1 cut(s) 640
FauI CCCGC 1 cut(s) 277
FauNDI CATATG 1 cut(s) 333
FblI GTMKAC 1 cut(s) 455
Fnu4HI GCNGC 4 cut(s) 12, 50, 78, 227
FokI GGATG 7 cut(s) 182, 254, 536, 643, 740, 830, 834
Fsp4HI GCNGC 4 cut(s) 12, 50, 78, 227
FspBI CTAG 3 cut(s) 90, 95, 686
FspI TGCGCA 1 cut(s) 846
GlaI GCGC 2 cut(s) 283, 846
GluI GCNGC 4 cut(s) 12, 50, 78, 227
HapII CCGG 2 cut(s) 558, 852
HhaI GCGC 2 cut(s) 284, 847
Hin1II CATG 1 cut(s) 644
Hin6I GCGC 2 cut(s) 282, 845
HinP1I GCGC 2 cut(s) 282, 845
HinfI GANTC 3 cut(s) 452, 511, 739
HpaII CCGG 2 cut(s) 558, 852
HphI GGTGA 2 cut(s) 299, 412
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 6 cut(s) 90, 107, 176, 239, 362, 508
Hpy8I GTNNAC 1 cut(s) 456
Hpy99I CGWCG 2 cut(s) 31, 43
HpyAV CCTTC 3 cut(s) 214, 245, 475
HpyCH4III ACNGT 2 cut(s) 460, 577
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 5 cut(s) 52, 80, 640, 695, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 886
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 1 cut(s) 644
HspAI GCGC 2 cut(s) 282, 845
Kzo9I GATC 2 cut(s) 172, 598
LmnI GCTCC 4 cut(s) 484, 808, 855, 886
LpnPI CCDG 6 cut(s) 161, 224, 493, 571, 844, 865
Lsp1109I GCAGC 2 cut(s) 36, 64
LweI GCATC 4 cut(s) 42, 135, 232, 856
MaeI CTAG 3 cut(s) 90, 95, 686
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 4 cut(s) 260, 287, 325, 828
MalI GATC 2 cut(s) 174, 600
MboI GATC 2 cut(s) 172, 598
MboII GAAGA 4 cut(s) 154, 485, 679, 905
MlyI GAGTC 2 cut(s) 461, 520
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 5 cut(s) 130, 316, 462, 718, 793
MseI TTAA 4 cut(s) 294, 369, 495, 626
MslI CAYNNNNRTG 1 cut(s) 726
MspI CCGG 2 cut(s) 558, 852
MspR9I CCNGG 3 cut(s) 558, 852, 853
Mva1269I GAATGC 1 cut(s) 542
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 886
NciI CCSGG 3 cut(s) 558, 852, 853
NdeI CATATG 1 cut(s) 333
NdeII GATC 2 cut(s) 172, 598
NlaIII CATG 1 cut(s) 644
NlaIV GGNNCC 1 cut(s) 804
NmuCI GTSAC 1 cut(s) 287
NsbI TGCGCA 1 cut(s) 846
NspI RCATGY 1 cut(s) 644
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 795
PctI GAATGC 1 cut(s) 542
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 4 cut(s) 13, 51, 79, 228
PleI GAGTC 2 cut(s) 460, 519
PpsI GAGTC 2 cut(s) 460, 519
PspN4I GGNNCC 1 cut(s) 804
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 4 cut(s) 294, 369, 495, 626
SatI GCNGC 4 cut(s) 12, 50, 78, 227
Sau3AI GATC 2 cut(s) 172, 598
SchI GAGTC 2 cut(s) 461, 520
ScrFI CCNGG 3 cut(s) 558, 852, 853
SfaNI GCATC 4 cut(s) 42, 135, 232, 856
SmaI CCCGGG 1 cut(s) 853
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 2 cut(s) 128, 881
SmoI CTYRAG 2 cut(s) 128, 881
SsiI CCGC 3 cut(s) 11, 226, 284
SspMI CTAG 3 cut(s) 90, 95, 686
StyD4I CCNGG 3 cut(s) 556, 850, 851
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 460, 577
TaiI ACGT 1 cut(s) 792
TaqI TCGA 1 cut(s) 26
TauI GCSGC 2 cut(s) 14, 229
TfiI GAWTC 1 cut(s) 739
Tru1I TTAA 4 cut(s) 294, 369, 495, 626
Tru9I TTAA 4 cut(s) 294, 369, 495, 626
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 49, 77
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 75, 370, 689, 861
TspGWI ACGGA 1 cut(s) 430
TspMI CCCGGG 1 cut(s) 851
XapI RAATTY 1 cut(s) 617
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 1 cut(s) 644
XmaI CCCGGG 1 cut(s) 851
XmiI GTMKAC 1 cut(s) 455
XspI CTAG 3 cut(s) 90, 95, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.