Rh6DG147400

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
21356247 .. 21365804
9558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG147400.1

Sequence Viewer

Length: 1854 bp
ATGGAGGTAGCGGCTCTTATATTTTCGACGGGCATCTCGTCGTCTATGCTGCAACCGACTGCTGAAAGAATTATAGCTGCAATTTCATCTAGACTAGAGAAAGTTCTTGATTACGGCGATAAACTTCTCAAGTTGGAGGCGAAGATGCTGAAACTTCAATGTCTTGTGGATGATCTGGAAAATAAGCCCGTATCCCGTTGTTGTGGAATGTTGGTAGAGAAGGTGCGGCATAGCCTTCTGGATGCTGATGACTTGTTTAGTTACATTGAAGCGAAAGTGGGCGCGGGTGACATTAACTATATACAGATAAAGCTAAAGCAAGAGGTAACTCATATGCTTGACACTCTCAACTATTGGTGTCAAGAAATTAAAGCCCTTTTCATATCAGAGATAGCCAAGGTGAGTTCCCCACAAACTCTACGAATTAGTGGTGGTTGTTCCGTCATAGATGAGTCTACTGTAATTGGGAGGGAAGACGAGAAGGAGCAAGTGGTTAAATGGTTGTTCAGGAGTCAAAAGGGGGATGATGTTGGTGTGATAGCATTCGTGGGTATGCCCGGCATTGGCAAAACCACAGTAGCTCAATTTATTTACAATGATCCATTAGTTGTTTCTAAATTTGAATTAAGGATGTGGGTGCATGTGTCTAAAGATTATGATGTTGTGAAGATAATGAAATCAATGCTAGAGTGTGCAACAAGAAAGGTGTGCAAGTTATCACACGAGGATGTTATTAGGAATCAATTTGAAGTGGTGCTGAACAAGAAGTTTTTACTTGTATTAGATGACGTGTGGAACGAGGCTCCCCACGATTGGGATGACTTCAAGTTACTTTTTAGACTTGCGCATCCCGGGAGCAGGGTTATCAAATTGAGGACATTTATGTTGGTTTCCCACTTGGTGCAACCCCCTCGGGGTCTTCTTGAGTCTGAACTCTTTGAAAAGTTTTTTCAATCATTTCATCTGTTAAGGGTTTTAGATTTAAGTGGCAGTGGCATCCGTCGTTTGTCGAACTCGGTTGGAAACAATACATGTCTTCATTATCTCAACCTTAGCGGTACTCGGATCAAAGTTTTACCAGAAGGTGTAGGTAATCAGATTGGATTAGAAACATTTAACCTCCTAGATGGTCCATCTATTGTAGAATGGCCCTCAAACTTTGAGAAGTTGACTAAGCTTCGACACCTTTACTATAATAAGCAGGGTAATGGTAATATGCCAAGAGCATTGGGAAAACTAACGAGGTTGGAAACTTTGCATACATTTGTTGTGAAAAGCGAAGAAGGATATGAAATTGAGGAGCTGAAAGACATGAATTGCCTCTGCGGATCTATTCTTATCAGAGGTCTTGAGAATGTGAAAGATTTTCATAAGGCTAAGGCTGCCATGTTGGAAAATAAGAAATTTCTTGACAAATTAGAGTTGCAGTGGGCTCAACAAAGAGAGCCAACAGATGAGACAATGAATGTTGATAAAGAAGTACTTCGAGGCCTTAAACCTCATAATAGGTTGACTGAGTTGGAAATAAAAGCCTATCATGGTGCTAGTTTGCCGGATTGGTTGGGCAATGCCTCTTACAAGCTTGAGAAGCTTGTCATTGATTTGTGTGTAGAATTGGTCGGTCTACCTTCACTTCACTTAACTTCACTCAAGAAGTTAGAGATTCAGAGCTGCCCTGTATCATTGCCCCTGAGCGGACTACCTATCTCGCTTGAAAATCTGAATATTTTAGGAAGTGGCATAATAAAGCAGCAGTGTGAGCAAGGGGGTAGTGAGTGGGAAAAAATAAGATATATTCCCATAGTAGAAATTGATTGTCAGCGTATACCAACCCTGCCTTCTCCAATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

617

Amino Acids

69.81

Weight (kDa)

6.46

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 158 - 289 2.2e-25 NB-ARC domain
LRR_14 PF23598 317 - 535 1.2e-22 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 432 - 558 1.5e-30 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 846
AccBSI CCGCTC 1 cut(s) 1695
AccI GTMKAC 3 cut(s) 455, 1624, 1825
AccII CGCG 1 cut(s) 284
AciI CCGC 6 cut(s) 11, 226, 284, 1056, 1326, 1695
AclWI GGATC 3 cut(s) 593, 1073, 1336
AcsI RAATTY 2 cut(s) 617, 1403
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 2 cut(s) 1060, 1482
AfiI CCNNNNNNNGG 6 cut(s) 563, 813, 814, 858, 914, 1694
AflIII ACRYGT 2 cut(s) 789, 1031
AgsI TTSAA 8 cut(s) 158, 269, 623, 749, 826, 941, 953, 1715
AjiI CACGTC 1 cut(s) 790
AjuI GAANNNNNNNTTGG 2 cut(s) 1822, 1854
AluBI AGCT 8 cut(s) 77, 313, 581, 1177, 1303, 1582, 1591, 1671
AluI AGCT 8 cut(s) 77, 313, 581, 1177, 1303, 1582, 1591, 1671
Alw26I GTCTC 1 cut(s) 1451
AlwI GGATC 3 cut(s) 593, 1073, 1336
Ama87I CYCGRG 2 cut(s) 851, 912
AoxI GGCC 2 cut(s) 1148, 1489
ApeKI GCWGC 5 cut(s) 49, 77, 1382, 1671, 1750
ApoI RAATTY 2 cut(s) 617, 1403
Asp700I GAANNNNTTC 1 cut(s) 1482
AspLEI GCGC 2 cut(s) 284, 847
AspS9I GGNCC 2 cut(s) 1130, 1149
AsuC2I CCSGG 3 cut(s) 558, 852, 853
AsuHPI GGTGA 2 cut(s) 299, 412
AvaI CYCGRG 2 cut(s) 851, 912
AvaII GGWCC 1 cut(s) 1130
BanII GRGCYC 1 cut(s) 1435
BauI CACGAG 1 cut(s) 722
BbsI GAAGAC 3 cut(s) 480, 911, 1028
BbvI GCAGC 5 cut(s) 36, 64, 1369, 1658, 1762
BccI CCATC 2 cut(s) 1121, 1141
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 893, 927
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 3 cut(s) 558, 852, 853
BcoDI GTCTC 1 cut(s) 1451
BfaI CTAG 5 cut(s) 90, 95, 686, 1124, 1545
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 7 cut(s) 12, 50, 78, 227, 1383, 1672, 1751
BlsI GCNGC 7 cut(s) 13, 51, 79, 228, 1384, 1673, 1752
BmcAI AGTACT 1 cut(s) 1482
Bme1390I CCNGG 3 cut(s) 558, 852, 853
Bme18I GGWCC 1 cut(s) 1130
BmeT110I CYCGRG 2 cut(s) 851, 912
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 1130, 1149
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 3 cut(s) 558, 852, 853
BmsI GCATC 5 cut(s) 42, 135, 232, 856, 1005
BpiI GAAGAC 3 cut(s) 480, 911, 1028
Bpu10I CCTNAGC 3 cut(s) 1052, 1377, 1691
BpuEI CTTGAG 5 cut(s) 113, 944, 1370, 1604, 1634
BpuMI CCSGG 3 cut(s) 558, 852, 853
BsaJI CCNNGG 3 cut(s) 396, 851, 911
Bsc4I CCNNNNNNNGG 6 cut(s) 563, 813, 814, 858, 914, 1694
Bse3DI GCAATG 2 cut(s) 1573, 1682
BseDI CCNNGG 3 cut(s) 396, 851, 911
BseGI GGATG 8 cut(s) 175, 247, 529, 636, 733, 823, 847, 996
BseLI CCNNNNNNNGG 6 cut(s) 563, 813, 814, 858, 914, 1694
BseMI GCAATG 2 cut(s) 1573, 1682
BseMII CTCAG 2 cut(s) 1506, 1682
BseRI GAGGAG 1 cut(s) 1313
BseXI GCAGC 5 cut(s) 36, 64, 1369, 1658, 1762
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 2 cut(s) 1150, 1491
BsiHKCI CYCGRG 2 cut(s) 851, 912
BsiSI CCGG 3 cut(s) 558, 852, 1553
BslI CCNNNNNNNGG 6 cut(s) 563, 813, 814, 858, 914, 1694
BsmAI GTCTC 1 cut(s) 1451
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 2 cut(s) 1150, 1491
BsoBI CYCGRG 2 cut(s) 851, 912
Bsp1286I GDGCHC 1 cut(s) 1435
Bsp143I GATC 4 cut(s) 172, 598, 1065, 1328
BspACI CCGC 6 cut(s) 11, 226, 284, 1056, 1326, 1695
BspANI GGCC 2 cut(s) 1150, 1491
BspCNI CTCAG 2 cut(s) 1507, 1683
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 804
BspPI GGATC 3 cut(s) 593, 1073, 1336
BsrBI CCGCTC 1 cut(s) 1695
BsrDI GCAATG 2 cut(s) 1573, 1682
BssECI CCNNGG 3 cut(s) 396, 851, 911
BssMI GATC 4 cut(s) 172, 598, 1065, 1328
BssNAI GTATAC 1 cut(s) 1826
BssSI CACGAG 1 cut(s) 722
BssT1I CCWWGG 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 1826
Bst2BI CACGAG 1 cut(s) 722
Bst4CI ACNGT 2 cut(s) 460, 577
BstDEI CTNAG 5 cut(s) 1052, 1173, 1377, 1515, 1691
BstF5I GGATG 8 cut(s) 175, 247, 529, 636, 733, 823, 847, 996
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 2 cut(s) 284, 847
BstKTI GATC 4 cut(s) 175, 601, 1068, 1331
BstMAI GTCTC 1 cut(s) 1451
BstMBI GATC 4 cut(s) 172, 598, 1065, 1328
BstMWI GCNNNNNNNGC 3 cut(s) 1382, 1588, 1759
BstNSI RCATGY 2 cut(s) 644, 1035
BstSCI CCNGG 3 cut(s) 556, 850, 851
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 5 cut(s) 36, 64, 1369, 1658, 1762
BstV2I GAAGAC 3 cut(s) 480, 911, 1028
BstX2I RGATCY 1 cut(s) 1328
BstYI RGATCY 1 cut(s) 1328
BstZ17I GTATAC 1 cut(s) 1826
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 1150, 1491
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 8 cut(s) 175, 247, 529, 636, 733, 823, 847, 996
BtsI GCAGTG 3 cut(s) 997, 1433, 1760
BtsIMutI CAGTG 3 cut(s) 997, 1433, 1760
CfoI GCGC 2 cut(s) 284, 847
Cfr13I GGNCC 2 cut(s) 1130, 1149
Cfr9I CCCGGG 1 cut(s) 851
Csp6I GTAC 2 cut(s) 1059, 1481
CviAII CATG 6 cut(s) 641, 1032, 1312, 1387, 1538, 1851
CviQI GTAC 2 cut(s) 1059, 1481
DdeI CTNAG 5 cut(s) 1052, 1173, 1377, 1515, 1691
DpnI GATC 4 cut(s) 174, 600, 1067, 1330
DpnII GATC 4 cut(s) 172, 598, 1065, 1328
DraIII CACNNNGTG 1 cut(s) 901
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 1491
Eco24I GRGCYC 1 cut(s) 1435
Eco47I GGWCC 1 cut(s) 1130
Eco88I CYCGRG 2 cut(s) 851, 912
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 1435
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 6 cut(s) 644, 1035, 1315, 1390, 1541, 1854
FalI AAGNNNNNCTT 2 cut(s) 1467, 1499
FatI CATG 6 cut(s) 640, 1031, 1311, 1386, 1537, 1850
FauI CCCGC 1 cut(s) 277
FauNDI CATATG 1 cut(s) 333
FblI GTMKAC 3 cut(s) 455, 1624, 1825
Fnu4HI GCNGC 7 cut(s) 12, 50, 78, 227, 1383, 1672, 1751
FokI GGATG 8 cut(s) 182, 254, 536, 643, 740, 830, 834, 983
FriOI GRGCYC 1 cut(s) 1435
Fsp4HI GCNGC 7 cut(s) 12, 50, 78, 227, 1383, 1672, 1751
FspBI CTAG 5 cut(s) 90, 95, 686, 1124, 1545
FspI TGCGCA 1 cut(s) 846
GlaI GCGC 2 cut(s) 283, 846
GluI GCNGC 7 cut(s) 12, 50, 78, 227, 1383, 1672, 1751
HaeIII GGCC 2 cut(s) 1150, 1491
HapII CCGG 3 cut(s) 558, 852, 1553
HhaI GCGC 2 cut(s) 284, 847
Hin1II CATG 6 cut(s) 644, 1035, 1315, 1390, 1541, 1854
Hin6I GCGC 2 cut(s) 282, 845
HinP1I GCGC 2 cut(s) 282, 845
HincII GTYRAC 2 cut(s) 1170, 1512
HindII GTYRAC 2 cut(s) 1170, 1512
HindIII AAGCTT 3 cut(s) 1175, 1580, 1589
HinfI GANTC 5 cut(s) 452, 511, 739, 926, 1663
HpaII CCGG 3 cut(s) 558, 852, 1553
HphI GGTGA 2 cut(s) 299, 412
Hpy166II GTNNAC 5 cut(s) 456, 1170, 1512, 1625, 1826
Hpy188I TCNGA 7 cut(s) 388, 931, 1065, 1098, 1343, 1668, 1722
Hpy8I GTNNAC 5 cut(s) 456, 1170, 1512, 1625, 1826
Hpy99I CGWCG 3 cut(s) 31, 43, 1005
HpyAV CCTTC 7 cut(s) 214, 245, 475, 1076, 1277, 1638, 1848
HpyCH4III ACNGT 2 cut(s) 460, 577
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 8 cut(s) 52, 80, 640, 695, 711, 904, 1258, 1426
HpyF10VI GCNNNNNNNGC 3 cut(s) 1382, 1588, 1759
HpyF3I CTNAG 5 cut(s) 1052, 1173, 1377, 1515, 1691
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 6 cut(s) 644, 1035, 1315, 1390, 1541, 1854
HspAI GCGC 2 cut(s) 282, 845
Kzo9I GATC 4 cut(s) 172, 598, 1065, 1328
LmnI GCTCC 4 cut(s) 484, 808, 855, 1300
Lsp1109I GCAGC 5 cut(s) 36, 64, 1369, 1658, 1762
LweI GCATC 5 cut(s) 42, 135, 232, 856, 1005
MaeI CTAG 5 cut(s) 90, 95, 686, 1124, 1545
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 4 cut(s) 260, 287, 325, 828
MalI GATC 4 cut(s) 174, 600, 1067, 1330
MbiI CCGCTC 1 cut(s) 1695
MboI GATC 4 cut(s) 172, 598, 1065, 1328
MboII GAAGA 6 cut(s) 154, 485, 679, 911, 1028, 1292
MflI RGATCY 1 cut(s) 1328
MhlI GDGCHC 1 cut(s) 1435
MlyI GAGTC 3 cut(s) 461, 520, 935
MmeI TCCRAC 5 cut(s) 114, 1000, 1227, 1371, 1500
MroXI GAANNNNTTC 1 cut(s) 1482
MseI TTAA 9 cut(s) 294, 369, 495, 626, 968, 983, 1116, 1494, 1640
MslI CAYNNNNRTG 1 cut(s) 726
MspI CCGG 3 cut(s) 558, 852, 1553
MspR9I CCNGG 3 cut(s) 558, 852, 853
Mva1269I GAATGC 1 cut(s) 542
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 3 cut(s) 1382, 1588, 1759
NciI CCSGG 3 cut(s) 558, 852, 853
NdeI CATATG 1 cut(s) 333
NdeII GATC 4 cut(s) 172, 598, 1065, 1328
NlaIII CATG 6 cut(s) 644, 1035, 1315, 1390, 1541, 1854
NlaIV GGNNCC 1 cut(s) 804
NmuCI GTSAC 1 cut(s) 287
NsbI TGCGCA 1 cut(s) 846
NspI RCATGY 2 cut(s) 644, 1035
PceI AGGCCT 1 cut(s) 1491
PciI ACATGT 1 cut(s) 1031
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 795
PctI GAATGC 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 1482
PfeI GAWTC 2 cut(s) 739, 1663
PkrI GCNGC 7 cut(s) 13, 51, 79, 228, 1384, 1673, 1752
PleI GAGTC 3 cut(s) 460, 519, 934
PpsI GAGTC 3 cut(s) 460, 519, 934
PscI ACATGT 1 cut(s) 1031
PspN4I GGNNCC 1 cut(s) 804
PspPI GGNCC 2 cut(s) 1130, 1149
PsuI RGATCY 1 cut(s) 1328
RsaI GTAC 2 cut(s) 1060, 1482
RsaNI GTAC 2 cut(s) 1059, 1481
RseI CAYNNNNRTG 1 cut(s) 726
SaqAI TTAA 9 cut(s) 294, 369, 495, 626, 968, 983, 1116, 1494, 1640
SatI GCNGC 7 cut(s) 12, 50, 78, 227, 1383, 1672, 1751
Sau3AI GATC 4 cut(s) 172, 598, 1065, 1328
Sau96I GGNCC 2 cut(s) 1130, 1149
ScaI AGTACT 1 cut(s) 1482
SchI GAGTC 3 cut(s) 461, 520, 935
ScrFI CCNGG 3 cut(s) 558, 852, 853
SduI GDGCHC 1 cut(s) 1435
SfaNI GCATC 5 cut(s) 42, 135, 232, 856, 1005
SinI GGWCC 1 cut(s) 1130
SmaI CCCGGG 1 cut(s) 853
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 5 cut(s) 128, 923, 1349, 1583, 1649
SmoI CTYRAG 5 cut(s) 128, 923, 1349, 1583, 1649
SseBI AGGCCT 1 cut(s) 1491
SsiI CCGC 6 cut(s) 11, 226, 284, 1056, 1326, 1695
SspI AATATT 1 cut(s) 1726
SspMI CTAG 5 cut(s) 90, 95, 686, 1124, 1545
StuI AGGCCT 1 cut(s) 1491
StyD4I CCNGG 3 cut(s) 556, 850, 851
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 460, 577
TaiI ACGT 1 cut(s) 792
TaqI TCGA 4 cut(s) 26, 1010, 1180, 1486
TaqII GACCGA 1 cut(s) 1610
TatI WGTACW 1 cut(s) 1480
TauI GCSGC 2 cut(s) 14, 229
TfiI GAWTC 2 cut(s) 739, 1663
Tru1I TTAA 9 cut(s) 294, 369, 495, 626, 968, 983, 1116, 1494, 1640
Tru9I TTAA 9 cut(s) 294, 369, 495, 626, 968, 983, 1116, 1494, 1640
TscAI CASTG 3 cut(s) 997, 1433, 1760
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 5 cut(s) 49, 77, 1382, 1671, 1750
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 9 cut(s) 75, 370, 689, 950, 1028, 1305, 1328, 1358, 1478
TspGWI ACGGA 2 cut(s) 430, 989
TspMI CCCGGG 1 cut(s) 851
TspRI CASTG 3 cut(s) 997, 1433, 1760
VpaK11BI GGWCC 1 cut(s) 1130
XapI RAATTY 2 cut(s) 617, 1403
XbaI TCTAGA 1 cut(s) 89
XceI RCATGY 2 cut(s) 644, 1035
XmaI CCCGGG 1 cut(s) 851
XmiI GTMKAC 3 cut(s) 455, 1624, 1825
XmnI GAANNNNTTC 1 cut(s) 1482
XspI CTAG 5 cut(s) 90, 95, 686, 1124, 1545
ZrmI AGTACT 1 cut(s) 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.