disease resistance
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001 |
| rosa_multiflora | Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00200180 |
| rosa_rugosa | Rorug06G0036900 Rorug06G0038600 |
| rosa_samantha | Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 846 |
| AccBSI | CCGCTC | 1 cut(s) | 1695 |
| AccI | GTMKAC | 3 cut(s) | 455, 1624, 1825 |
| AccII | CGCG | 1 cut(s) | 284 |
| AciI | CCGC | 6 cut(s) | 11, 226, 284, 1056, 1326, 1695 |
| AclWI | GGATC | 3 cut(s) | 593, 1073, 1336 |
| AcsI | RAATTY | 2 cut(s) | 617, 1403 |
| AdeI | CACNNNGTG | 1 cut(s) | 901 |
| AfaI | GTAC | 2 cut(s) | 1060, 1482 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 563, 813, 814, 858, 914, 1694 |
| AflIII | ACRYGT | 2 cut(s) | 789, 1031 |
| AgsI | TTSAA | 8 cut(s) | 158, 269, 623, 749, 826, 941, 953, 1715 |
| AjiI | CACGTC | 1 cut(s) | 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1822, 1854 |
| AluBI | AGCT | 8 cut(s) | 77, 313, 581, 1177, 1303, 1582, 1591, 1671 |
| AluI | AGCT | 8 cut(s) | 77, 313, 581, 1177, 1303, 1582, 1591, 1671 |
| Alw26I | GTCTC | 1 cut(s) | 1451 |
| AlwI | GGATC | 3 cut(s) | 593, 1073, 1336 |
| Ama87I | CYCGRG | 2 cut(s) | 851, 912 |
| AoxI | GGCC | 2 cut(s) | 1148, 1489 |
| ApeKI | GCWGC | 5 cut(s) | 49, 77, 1382, 1671, 1750 |
| ApoI | RAATTY | 2 cut(s) | 617, 1403 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1482 |
| AspLEI | GCGC | 2 cut(s) | 284, 847 |
| AspS9I | GGNCC | 2 cut(s) | 1130, 1149 |
| AsuC2I | CCSGG | 3 cut(s) | 558, 852, 853 |
| AsuHPI | GGTGA | 2 cut(s) | 299, 412 |
| AvaI | CYCGRG | 2 cut(s) | 851, 912 |
| AvaII | GGWCC | 1 cut(s) | 1130 |
| BanII | GRGCYC | 1 cut(s) | 1435 |
| BauI | CACGAG | 1 cut(s) | 722 |
| BbsI | GAAGAC | 3 cut(s) | 480, 911, 1028 |
| BbvI | GCAGC | 5 cut(s) | 36, 64, 1369, 1658, 1762 |
| BccI | CCATC | 2 cut(s) | 1121, 1141 |
| BceAI | ACGGC | 1 cut(s) | 130 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 893, 927 |
| BciVI | GTATCC | 1 cut(s) | 202 |
| BcnI | CCSGG | 3 cut(s) | 558, 852, 853 |
| BcoDI | GTCTC | 1 cut(s) | 1451 |
| BfaI | CTAG | 5 cut(s) | 90, 95, 686, 1124, 1545 |
| BfuI | GTATCC | 1 cut(s) | 202 |
| BisI | GCNGC | 7 cut(s) | 12, 50, 78, 227, 1383, 1672, 1751 |
| BlsI | GCNGC | 7 cut(s) | 13, 51, 79, 228, 1384, 1673, 1752 |
| BmcAI | AGTACT | 1 cut(s) | 1482 |
| Bme1390I | CCNGG | 3 cut(s) | 558, 852, 853 |
| Bme18I | GGWCC | 1 cut(s) | 1130 |
| BmeT110I | CYCGRG | 2 cut(s) | 851, 912 |
| BmgBI | CACGTC | 1 cut(s) | 790 |
| BmgT120I | GGNCC | 2 cut(s) | 1130, 1149 |
| BmiI | GGNNCC | 1 cut(s) | 804 |
| BmrFI | CCNGG | 3 cut(s) | 558, 852, 853 |
| BmsI | GCATC | 5 cut(s) | 42, 135, 232, 856, 1005 |
| BpiI | GAAGAC | 3 cut(s) | 480, 911, 1028 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1052, 1377, 1691 |
| BpuEI | CTTGAG | 5 cut(s) | 113, 944, 1370, 1604, 1634 |
| BpuMI | CCSGG | 3 cut(s) | 558, 852, 853 |
| BsaJI | CCNNGG | 3 cut(s) | 396, 851, 911 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 563, 813, 814, 858, 914, 1694 |
| Bse3DI | GCAATG | 2 cut(s) | 1573, 1682 |
| BseDI | CCNNGG | 3 cut(s) | 396, 851, 911 |
| BseGI | GGATG | 8 cut(s) | 175, 247, 529, 636, 733, 823, 847, 996 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 563, 813, 814, 858, 914, 1694 |
| BseMI | GCAATG | 2 cut(s) | 1573, 1682 |
| BseMII | CTCAG | 2 cut(s) | 1506, 1682 |
| BseRI | GAGGAG | 1 cut(s) | 1313 |
| BseXI | GCAGC | 5 cut(s) | 36, 64, 1369, 1658, 1762 |
| Bsh1236I | CGCG | 1 cut(s) | 284 |
| BshFI | GGCC | 2 cut(s) | 1150, 1491 |
| BsiHKCI | CYCGRG | 2 cut(s) | 851, 912 |
| BsiSI | CCGG | 3 cut(s) | 558, 852, 1553 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 563, 813, 814, 858, 914, 1694 |
| BsmAI | GTCTC | 1 cut(s) | 1451 |
| BsmI | GAATGC | 1 cut(s) | 542 |
| BsnI | GGCC | 2 cut(s) | 1150, 1491 |
| BsoBI | CYCGRG | 2 cut(s) | 851, 912 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1435 |
| Bsp143I | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| BspACI | CCGC | 6 cut(s) | 11, 226, 284, 1056, 1326, 1695 |
| BspANI | GGCC | 2 cut(s) | 1150, 1491 |
| BspCNI | CTCAG | 2 cut(s) | 1507, 1683 |
| BspFNI | CGCG | 1 cut(s) | 284 |
| BspLI | GGNNCC | 1 cut(s) | 804 |
| BspPI | GGATC | 3 cut(s) | 593, 1073, 1336 |
| BsrBI | CCGCTC | 1 cut(s) | 1695 |
| BsrDI | GCAATG | 2 cut(s) | 1573, 1682 |
| BssECI | CCNNGG | 3 cut(s) | 396, 851, 911 |
| BssMI | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| BssNAI | GTATAC | 1 cut(s) | 1826 |
| BssSI | CACGAG | 1 cut(s) | 722 |
| BssT1I | CCWWGG | 1 cut(s) | 396 |
| Bst1107I | GTATAC | 1 cut(s) | 1826 |
| Bst2BI | CACGAG | 1 cut(s) | 722 |
| Bst4CI | ACNGT | 2 cut(s) | 460, 577 |
| BstDEI | CTNAG | 5 cut(s) | 1052, 1173, 1377, 1515, 1691 |
| BstF5I | GGATG | 8 cut(s) | 175, 247, 529, 636, 733, 823, 847, 996 |
| BstFNI | CGCG | 1 cut(s) | 284 |
| BstHHI | GCGC | 2 cut(s) | 284, 847 |
| BstKTI | GATC | 4 cut(s) | 175, 601, 1068, 1331 |
| BstMAI | GTCTC | 1 cut(s) | 1451 |
| BstMBI | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1382, 1588, 1759 |
| BstNSI | RCATGY | 2 cut(s) | 644, 1035 |
| BstSCI | CCNGG | 3 cut(s) | 556, 850, 851 |
| BstUI | CGCG | 1 cut(s) | 284 |
| BstV1I | GCAGC | 5 cut(s) | 36, 64, 1369, 1658, 1762 |
| BstV2I | GAAGAC | 3 cut(s) | 480, 911, 1028 |
| BstX2I | RGATCY | 1 cut(s) | 1328 |
| BstYI | RGATCY | 1 cut(s) | 1328 |
| BstZ17I | GTATAC | 1 cut(s) | 1826 |
| BsuI | GTATCC | 1 cut(s) | 202 |
| BsuRI | GGCC | 2 cut(s) | 1150, 1491 |
| BtrI | CACGTC | 1 cut(s) | 790 |
| BtsCI | GGATG | 8 cut(s) | 175, 247, 529, 636, 733, 823, 847, 996 |
| BtsI | GCAGTG | 3 cut(s) | 997, 1433, 1760 |
| BtsIMutI | CAGTG | 3 cut(s) | 997, 1433, 1760 |
| CfoI | GCGC | 2 cut(s) | 284, 847 |
| Cfr13I | GGNCC | 2 cut(s) | 1130, 1149 |
| Cfr9I | CCCGGG | 1 cut(s) | 851 |
| Csp6I | GTAC | 2 cut(s) | 1059, 1481 |
| CviAII | CATG | 6 cut(s) | 641, 1032, 1312, 1387, 1538, 1851 |
| CviQI | GTAC | 2 cut(s) | 1059, 1481 |
| DdeI | CTNAG | 5 cut(s) | 1052, 1173, 1377, 1515, 1691 |
| DpnI | GATC | 4 cut(s) | 174, 600, 1067, 1330 |
| DpnII | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| DraIII | CACNNNGTG | 1 cut(s) | 901 |
| Eco130I | CCWWGG | 1 cut(s) | 396 |
| Eco147I | AGGCCT | 1 cut(s) | 1491 |
| Eco24I | GRGCYC | 1 cut(s) | 1435 |
| Eco47I | GGWCC | 1 cut(s) | 1130 |
| Eco88I | CYCGRG | 2 cut(s) | 851, 912 |
| EcoT14I | CCWWGG | 1 cut(s) | 396 |
| EcoT38I | GRGCYC | 1 cut(s) | 1435 |
| ErhI | CCWWGG | 1 cut(s) | 396 |
| FaeI | CATG | 6 cut(s) | 644, 1035, 1315, 1390, 1541, 1854 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1467, 1499 |
| FatI | CATG | 6 cut(s) | 640, 1031, 1311, 1386, 1537, 1850 |
| FauI | CCCGC | 1 cut(s) | 277 |
| FauNDI | CATATG | 1 cut(s) | 333 |
| FblI | GTMKAC | 3 cut(s) | 455, 1624, 1825 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 50, 78, 227, 1383, 1672, 1751 |
| FokI | GGATG | 8 cut(s) | 182, 254, 536, 643, 740, 830, 834, 983 |
| FriOI | GRGCYC | 1 cut(s) | 1435 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 50, 78, 227, 1383, 1672, 1751 |
| FspBI | CTAG | 5 cut(s) | 90, 95, 686, 1124, 1545 |
| FspI | TGCGCA | 1 cut(s) | 846 |
| GlaI | GCGC | 2 cut(s) | 283, 846 |
| GluI | GCNGC | 7 cut(s) | 12, 50, 78, 227, 1383, 1672, 1751 |
| HaeIII | GGCC | 2 cut(s) | 1150, 1491 |
| HapII | CCGG | 3 cut(s) | 558, 852, 1553 |
| HhaI | GCGC | 2 cut(s) | 284, 847 |
| Hin1II | CATG | 6 cut(s) | 644, 1035, 1315, 1390, 1541, 1854 |
| Hin6I | GCGC | 2 cut(s) | 282, 845 |
| HinP1I | GCGC | 2 cut(s) | 282, 845 |
| HincII | GTYRAC | 2 cut(s) | 1170, 1512 |
| HindII | GTYRAC | 2 cut(s) | 1170, 1512 |
| HindIII | AAGCTT | 3 cut(s) | 1175, 1580, 1589 |
| HinfI | GANTC | 5 cut(s) | 452, 511, 739, 926, 1663 |
| HpaII | CCGG | 3 cut(s) | 558, 852, 1553 |
| HphI | GGTGA | 2 cut(s) | 299, 412 |
| Hpy166II | GTNNAC | 5 cut(s) | 456, 1170, 1512, 1625, 1826 |
| Hpy188I | TCNGA | 7 cut(s) | 388, 931, 1065, 1098, 1343, 1668, 1722 |
| Hpy8I | GTNNAC | 5 cut(s) | 456, 1170, 1512, 1625, 1826 |
| Hpy99I | CGWCG | 3 cut(s) | 31, 43, 1005 |
| HpyAV | CCTTC | 7 cut(s) | 214, 245, 475, 1076, 1277, 1638, 1848 |
| HpyCH4III | ACNGT | 2 cut(s) | 460, 577 |
| HpyCH4IV | ACGT | 1 cut(s) | 789 |
| HpyCH4V | TGCA | 8 cut(s) | 52, 80, 640, 695, 711, 904, 1258, 1426 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1382, 1588, 1759 |
| HpyF3I | CTNAG | 5 cut(s) | 1052, 1173, 1377, 1515, 1691 |
| HpySE526I | ACGT | 1 cut(s) | 789 |
| Hsp92II | CATG | 6 cut(s) | 644, 1035, 1315, 1390, 1541, 1854 |
| HspAI | GCGC | 2 cut(s) | 282, 845 |
| Kzo9I | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| LmnI | GCTCC | 4 cut(s) | 484, 808, 855, 1300 |
| Lsp1109I | GCAGC | 5 cut(s) | 36, 64, 1369, 1658, 1762 |
| LweI | GCATC | 5 cut(s) | 42, 135, 232, 856, 1005 |
| MaeI | CTAG | 5 cut(s) | 90, 95, 686, 1124, 1545 |
| MaeII | ACGT | 1 cut(s) | 789 |
| MaeIII | GTNAC | 4 cut(s) | 260, 287, 325, 828 |
| MalI | GATC | 4 cut(s) | 174, 600, 1067, 1330 |
| MbiI | CCGCTC | 1 cut(s) | 1695 |
| MboI | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| MboII | GAAGA | 6 cut(s) | 154, 485, 679, 911, 1028, 1292 |
| MflI | RGATCY | 1 cut(s) | 1328 |
| MhlI | GDGCHC | 1 cut(s) | 1435 |
| MlyI | GAGTC | 3 cut(s) | 461, 520, 935 |
| MmeI | TCCRAC | 5 cut(s) | 114, 1000, 1227, 1371, 1500 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1482 |
| MseI | TTAA | 9 cut(s) | 294, 369, 495, 626, 968, 983, 1116, 1494, 1640 |
| MslI | CAYNNNNRTG | 1 cut(s) | 726 |
| MspI | CCGG | 3 cut(s) | 558, 852, 1553 |
| MspR9I | CCNGG | 3 cut(s) | 558, 852, 853 |
| Mva1269I | GAATGC | 1 cut(s) | 542 |
| MvnI | CGCG | 1 cut(s) | 284 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1382, 1588, 1759 |
| NciI | CCSGG | 3 cut(s) | 558, 852, 853 |
| NdeI | CATATG | 1 cut(s) | 333 |
| NdeII | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| NlaIII | CATG | 6 cut(s) | 644, 1035, 1315, 1390, 1541, 1854 |
| NlaIV | GGNNCC | 1 cut(s) | 804 |
| NmuCI | GTSAC | 1 cut(s) | 287 |
| NsbI | TGCGCA | 1 cut(s) | 846 |
| NspI | RCATGY | 2 cut(s) | 644, 1035 |
| PceI | AGGCCT | 1 cut(s) | 1491 |
| PciI | ACATGT | 1 cut(s) | 1031 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 35, 795 |
| PctI | GAATGC | 1 cut(s) | 542 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1482 |
| PfeI | GAWTC | 2 cut(s) | 739, 1663 |
| PkrI | GCNGC | 7 cut(s) | 13, 51, 79, 228, 1384, 1673, 1752 |
| PleI | GAGTC | 3 cut(s) | 460, 519, 934 |
| PpsI | GAGTC | 3 cut(s) | 460, 519, 934 |
| PscI | ACATGT | 1 cut(s) | 1031 |
| PspN4I | GGNNCC | 1 cut(s) | 804 |
| PspPI | GGNCC | 2 cut(s) | 1130, 1149 |
| PsuI | RGATCY | 1 cut(s) | 1328 |
| RsaI | GTAC | 2 cut(s) | 1060, 1482 |
| RsaNI | GTAC | 2 cut(s) | 1059, 1481 |
| RseI | CAYNNNNRTG | 1 cut(s) | 726 |
| SaqAI | TTAA | 9 cut(s) | 294, 369, 495, 626, 968, 983, 1116, 1494, 1640 |
| SatI | GCNGC | 7 cut(s) | 12, 50, 78, 227, 1383, 1672, 1751 |
| Sau3AI | GATC | 4 cut(s) | 172, 598, 1065, 1328 |
| Sau96I | GGNCC | 2 cut(s) | 1130, 1149 |
| ScaI | AGTACT | 1 cut(s) | 1482 |
| SchI | GAGTC | 3 cut(s) | 461, 520, 935 |
| ScrFI | CCNGG | 3 cut(s) | 558, 852, 853 |
| SduI | GDGCHC | 1 cut(s) | 1435 |
| SfaNI | GCATC | 5 cut(s) | 42, 135, 232, 856, 1005 |
| SinI | GGWCC | 1 cut(s) | 1130 |
| SmaI | CCCGGG | 1 cut(s) | 853 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 726 |
| SmlI | CTYRAG | 5 cut(s) | 128, 923, 1349, 1583, 1649 |
| SmoI | CTYRAG | 5 cut(s) | 128, 923, 1349, 1583, 1649 |
| SseBI | AGGCCT | 1 cut(s) | 1491 |
| SsiI | CCGC | 6 cut(s) | 11, 226, 284, 1056, 1326, 1695 |
| SspI | AATATT | 1 cut(s) | 1726 |
| SspMI | CTAG | 5 cut(s) | 90, 95, 686, 1124, 1545 |
| StuI | AGGCCT | 1 cut(s) | 1491 |
| StyD4I | CCNGG | 3 cut(s) | 556, 850, 851 |
| StyI | CCWWGG | 1 cut(s) | 396 |
| TaaI | ACNGT | 2 cut(s) | 460, 577 |
| TaiI | ACGT | 1 cut(s) | 792 |
| TaqI | TCGA | 4 cut(s) | 26, 1010, 1180, 1486 |
| TaqII | GACCGA | 1 cut(s) | 1610 |
| TatI | WGTACW | 1 cut(s) | 1480 |
| TauI | GCSGC | 2 cut(s) | 14, 229 |
| TfiI | GAWTC | 2 cut(s) | 739, 1663 |
| Tru1I | TTAA | 9 cut(s) | 294, 369, 495, 626, 968, 983, 1116, 1494, 1640 |
| Tru9I | TTAA | 9 cut(s) | 294, 369, 495, 626, 968, 983, 1116, 1494, 1640 |
| TscAI | CASTG | 3 cut(s) | 997, 1433, 1760 |
| TseFI | GTSAC | 1 cut(s) | 287 |
| TseI | GCWGC | 5 cut(s) | 49, 77, 1382, 1671, 1750 |
| Tsp45I | GTSAC | 1 cut(s) | 287 |
| TspDTI | ATGAA | 9 cut(s) | 75, 370, 689, 950, 1028, 1305, 1328, 1358, 1478 |
| TspGWI | ACGGA | 2 cut(s) | 430, 989 |
| TspMI | CCCGGG | 1 cut(s) | 851 |
| TspRI | CASTG | 3 cut(s) | 997, 1433, 1760 |
| VpaK11BI | GGWCC | 1 cut(s) | 1130 |
| XapI | RAATTY | 2 cut(s) | 617, 1403 |
| XbaI | TCTAGA | 1 cut(s) | 89 |
| XceI | RCATGY | 2 cut(s) | 644, 1035 |
| XmaI | CCCGGG | 1 cut(s) | 851 |
| XmiI | GTMKAC | 3 cut(s) | 455, 1624, 1825 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1482 |
| XspI | CTAG | 5 cut(s) | 90, 95, 686, 1124, 1545 |
| ZrmI | AGTACT | 1 cut(s) | 1482 |