Rmu_sc0039783.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039783.1
OG0008180
Physical Location & Seq
Forward (+)
28 .. 672
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039783.1_g000001.1.cds

Sequence Viewer

Length: 645 bp
atgccaagagcattgggaaaactaacgaggttggaaactttgcatacatttgttgtgaaaagcgaagaaggatatgaaattgaggagctgaaagacatgaattgcctctgcggatctattcttatcagaggtcttgagaatgtgaaagattttcataaggctaaggctgccttgttggaaaataagaaatttcttgacaaattagagttgcagtgggctcaacaaagagagccaacagatgagacaatgaatgttgataaagaagtacttcgaggccttaaacctcataataggttgactgagttggaaataaaagcctatcattgtgctagtttgccggatttgttgggcaatgcctcttgcaagcttgagaagcttgtcattgattcgtgtgtagaattggtcggtctaccttcacttcacttaacttcactgaagaagttagagattcagagctgccctaaacttgtatcattgcccctgagcggactacctatttcgcttgaaaatctgaatattttaggaagtggcataataaagcagcagtgtgagcaagggggtagtgagtgggaaaaaataagatatattcccatagtagaaattgatggtcagcgtataccaaccctgccttctccaatgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

214

Amino Acids

24.0

Weight (kDa)

6.01

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 486
AccI GTMKAC 2 cut(s) 409, 616
AciI CCGC 2 cut(s) 111, 486
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 1 cut(s) 506
AjuI GAANNNNNNNTTGG 2 cut(s) 613, 645
AluBI AGCT 4 cut(s) 88, 367, 376, 456
AluI AGCT 4 cut(s) 88, 367, 376, 456
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 121
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 3 cut(s) 167, 456, 541
ApoI RAATTY 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 267
BanII GRGCYC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 154, 443, 553
BccI CCATC 1 cut(s) 599
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 330
BisI GCNGC 3 cut(s) 168, 457, 542
BlsI GCNGC 3 cut(s) 169, 458, 543
BmcAI AGTACT 1 cut(s) 267
Bpu10I CCTNAGC 2 cut(s) 162, 482
BpuEI CTTGAG 2 cut(s) 155, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse3DI GCAATG 2 cut(s) 358, 473
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 2 cut(s) 358, 473
BseMII CTCAG 2 cut(s) 291, 473
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 154, 443, 553
BshFI GGCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 113
BspACI CCGC 2 cut(s) 111, 486
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 292, 474
BspPI GGATC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 486
BsrDI GCAATG 2 cut(s) 358, 473
BssMI GATC 1 cut(s) 113
BssNAI GTATAC 1 cut(s) 617
Bst1107I GTATAC 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 162, 300, 482
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 3 cut(s) 167, 373, 550
BstV1I GCAGC 3 cut(s) 154, 443, 553
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 617
BsuRI GGCC 1 cut(s) 276
BtsI GCAGTG 2 cut(s) 218, 551
BtsIMutI CAGTG 3 cut(s) 218, 431, 551
Cac8I GCNNGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 266
CviAII CATG 2 cut(s) 97, 642
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 3 cut(s) 162, 300, 482
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 2 cut(s) 100, 645
FalI AAGNNNNNCTT 4 cut(s) 155, 187, 252, 284
FatI CATG 2 cut(s) 96, 641
FblI GTMKAC 2 cut(s) 409, 616
Fnu4HI GCNGC 3 cut(s) 168, 457, 542
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 168, 457, 542
FspBI CTAG 1 cut(s) 330
GluI GCNGC 3 cut(s) 168, 457, 542
HaeIII GGCC 1 cut(s) 276
HapII CCGG 1 cut(s) 338
Hin1II CATG 2 cut(s) 100, 645
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HindIII AAGCTT 2 cut(s) 365, 374
HinfI GANTC 2 cut(s) 386, 448
HpaII CCGG 1 cut(s) 338
Hpy166II GTNNAC 3 cut(s) 297, 410, 617
Hpy188I TCNGA 3 cut(s) 128, 453, 513
Hpy188III TCNNGA 2 cut(s) 134, 194
Hpy8I GTNNAC 3 cut(s) 297, 410, 617
HpyAV CCTTC 3 cut(s) 62, 423, 639
HpyCH4V TGCA 3 cut(s) 43, 211, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 373, 550
HpyF3I CTNAG 3 cut(s) 162, 300, 482
Hsp92II CATG 2 cut(s) 100, 645
Kzo9I GATC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 351, 494, 638
Lsp1109I GCAGC 3 cut(s) 154, 443, 553
MaeI CTAG 1 cut(s) 330
MalI GATC 1 cut(s) 115
MbiI CCGCTC 1 cut(s) 486
MboI GATC 1 cut(s) 113
MboII GAAGA 2 cut(s) 77, 448
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 6 cut(s) 78, 100, 188, 200, 398, 600
MmeI TCCRAC 3 cut(s) 12, 156, 285
MnlI CCTC 7 cut(s) 21, 76, 116, 122, 266, 294, 367
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 2 cut(s) 279, 425
MspI CCGG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 167, 373, 550
NdeII GATC 1 cut(s) 113
NlaIII CATG 2 cut(s) 100, 645
PceI AGGCCT 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 386, 448
PkrI GCNGC 3 cut(s) 169, 458, 543
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 2 cut(s) 279, 425
SatI GCNGC 3 cut(s) 168, 457, 542
Sau3AI GATC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 267
SduI GDGCHC 1 cut(s) 220
SmlI CTYRAG 2 cut(s) 134, 368
SmoI CTYRAG 2 cut(s) 134, 368
Sse9I AATT 6 cut(s) 78, 100, 188, 200, 398, 600
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 2 cut(s) 111, 486
SspI AATATT 1 cut(s) 517
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 276
TaqI TCGA 1 cut(s) 271
TaqII GACCGA 1 cut(s) 395
TasI AATT 6 cut(s) 78, 100, 188, 200, 398, 600
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 2 cut(s) 386, 448
Tru1I TTAA 2 cut(s) 279, 425
Tru9I TTAA 2 cut(s) 279, 425
TscAI CASTG 3 cut(s) 218, 438, 551
TseI GCWGC 3 cut(s) 167, 456, 541
TspDTI ATGAA 4 cut(s) 90, 113, 143, 263
TspRI CASTG 3 cut(s) 218, 438, 551
XapI RAATTY 1 cut(s) 188
XmiI GTMKAC 2 cut(s) 409, 616
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.