Rorug06G0038600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008180
Physical Location & Seq
Reverse (-)
4806075 .. 4806773
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0038600.1

Sequence Viewer

Length: 699 bp
ATGATGATGAAGAAGACCAACAAATCTAGCCAAGGTCGCCAAAAGATTCCTATTGCTAAAATAGCCAAGAGAGCCAATTTACAAGTCACATTCTCCAAGCGGCGATCGGGGCTCTTCAAGAAGGCCAGCGAGCTCTGCACACTTTGCGGTGTTGAGGTTGCAATCGTAGTCTTCTCTCCGGCCAACAAGCCCTACTCCTTCGGCCACCCGGAGGTTGACTCCCTCATTGACCGGTTTCTTGCTCGAAGCCCTAATTTTAATATTTCCCTAGCAGACCCTTGTCAGCAGCTTGGTGAGGCTCACAAGAATGCTAGTGCTAATGAGCTCAACATGCACCTAACAAGGATTTCGAACCAAATCGAGACTGAGAGAAAACGTGGTGAATCGCTTGATAAATTGAGCAAAACCAGCGAGTGTTGGTGGGAAAACCCAGTTGATGAACTTGGACTGGATGAGCTTCGAATACTTAAGGCTGCAATGGAGGAGCTCAAGAAGAATGTGAATGAACAAGCCAATAGGATTTGGATGGAGTCTAGTAATACTACTAGTATTGCTAATAATTCTTCATCATTCTTTATGATGAATAATGCCCATCATAAATTTGAGACCAGTCGCAGTAGTGATCAGGTTGGATCTGAGTCCATTAATATTCCTAGAGCATATGATTTTGGTTTTGCTGGGAATATTGGTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

232

Amino Acids

26.08

Weight (kDa)

9.03

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 20 - 67 1.5e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 100, 147
AclWI GGATC 1 cut(s) 640
AcoI YGGCCR 2 cut(s) 180, 202
AcsI RAATTY 1 cut(s) 599
AfiI CCNNNNNNNGG 1 cut(s) 211
AflII CTTAAG 1 cut(s) 467
AgeI ACCGGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 118
AhlI ACTAGT 1 cut(s) 545
AluBI AGCT 5 cut(s) 133, 289, 325, 457, 487
AluI AGCT 5 cut(s) 133, 289, 325, 457, 487
Alw21I GWGCWC 3 cut(s) 135, 327, 489
Alw26I GTCTC 2 cut(s) 356, 599
AlwI GGATC 1 cut(s) 640
AoxI GGCC 3 cut(s) 123, 180, 202
ApeKI GCWGC 2 cut(s) 286, 473
ApoI RAATTY 1 cut(s) 599
AseI ATTAAT 1 cut(s) 645
AsiGI ACCGGT 1 cut(s) 231
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 305, 392
AsuII TTCGAA 2 cut(s) 350, 460
BanII GRGCYC 4 cut(s) 114, 135, 327, 489
BbsI GAAGAC 2 cut(s) 20, 163
Bbv12I GWGCWC 3 cut(s) 135, 327, 489
BbvI GCAGC 2 cut(s) 298, 460
BccI CCATC 2 cut(s) 520, 600
BclI TGATCA 1 cut(s) 622
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 356, 599
BcuI ACTAGT 1 cut(s) 545
BfaI CTAG 6 cut(s) 27, 269, 312, 534, 546, 654
BfrI CTTAAG 1 cut(s) 467
BisI GCNGC 3 cut(s) 101, 287, 474
BlsI GCNGC 3 cut(s) 102, 288, 475
Bme1390I CCNGG 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 209
BmrI ACTGGG 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 425
BoxI GACNNNNGTC 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 20, 163
BplI GAGNNNNNCTC 2 cut(s) 203, 235
Bpu14I TTCGAA 2 cut(s) 350, 460
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 1 cut(s) 31
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 3 cut(s) 431, 453, 609
Bse3DI GCAATG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 457, 531
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 357, 627
BseNI ACTGG 3 cut(s) 431, 453, 609
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 2 cut(s) 298, 460
BseYI CCCAGC 1 cut(s) 677
BsgI GTGCAG 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 3 cut(s) 125, 182, 204
BshTI ACCGGT 1 cut(s) 231
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 3 cut(s) 135, 327, 489
BsiSI CCGG 3 cut(s) 179, 209, 232
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 356, 599
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 3 cut(s) 125, 182, 204
Bso31I GGTCTC 1 cut(s) 599
Bsp119I TTCGAA 2 cut(s) 350, 460
Bsp1286I GDGCHC 4 cut(s) 114, 135, 327, 489
Bsp143I GATC 3 cut(s) 104, 622, 632
BspACI CCGC 2 cut(s) 100, 147
BspANI GGCC 3 cut(s) 125, 182, 204
BspCNI CTCAG 2 cut(s) 358, 628
BspPI GGATC 1 cut(s) 640
BspQI GCTCTTC 1 cut(s) 119
BspT104I TTCGAA 2 cut(s) 350, 460
BspTI CTTAAG 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 3 cut(s) 431, 453, 609
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 3 cut(s) 104, 622, 632
BssT1I CCWWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 119
BstAFI CTTAAG 1 cut(s) 467
BstAPI GCANNNNNTGC 1 cut(s) 144
BstBI TTCGAA 2 cut(s) 350, 460
BstC8I GCNNGC 2 cut(s) 127, 131
BstDEI CTNAG 2 cut(s) 366, 636
BstF5I GGATG 2 cut(s) 457, 531
BstKTI GATC 3 cut(s) 107, 625, 635
BstMAI GTCTC 2 cut(s) 356, 599
BstMBI GATC 3 cut(s) 104, 622, 632
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 8 cut(s) 36, 62, 71, 109, 135, 144, 331, 408
BstNSI RCATGY 1 cut(s) 334
BstPAI GACNNNNGTC 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 298, 460
BstV2I GAAGAC 2 cut(s) 20, 163
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 3 cut(s) 125, 182, 204
BtsCI GGATG 2 cut(s) 457, 531
Cac8I GCNNGC 2 cut(s) 127, 131
Cfr10I RCCGGY 1 cut(s) 231
CspAI ACCGGT 1 cut(s) 231
CviAII CATG 1 cut(s) 331
DdeI CTNAG 2 cut(s) 366, 636
DpnI GATC 3 cut(s) 106, 624, 634
DpnII GATC 3 cut(s) 104, 622, 632
EaeI YGGCCR 2 cut(s) 180, 202
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Ecl136II GAGCTC 3 cut(s) 133, 325, 487
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 4 cut(s) 114, 135, 327, 489
Eco31I GGTCTC 1 cut(s) 599
Eco53kI GAGCTC 3 cut(s) 133, 325, 487
EcoICRI GAGCTC 3 cut(s) 133, 325, 487
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 4 cut(s) 114, 135, 327, 489
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 334
FaiI YATR 5 cut(s) 332, 578, 597, 661, 663
FatI CATG 1 cut(s) 330
FauNDI CATATG 1 cut(s) 661
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 3 cut(s) 101, 287, 474
FokI GGATG 2 cut(s) 464, 538
FriOI GRGCYC 4 cut(s) 114, 135, 327, 489
Fsp4HI GCNGC 3 cut(s) 101, 287, 474
FspBI CTAG 6 cut(s) 27, 269, 312, 534, 546, 654
GluI GCNGC 3 cut(s) 101, 287, 474
GsaI CCCAGC 1 cut(s) 681
HaeIII GGCC 3 cut(s) 125, 182, 204
HapII CCGG 3 cut(s) 179, 209, 232
Hin1II CATG 1 cut(s) 334
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 5 cut(s) 46, 218, 383, 530, 638
HpaII CCGG 3 cut(s) 179, 209, 232
HphI GGTGA 2 cut(s) 305, 392
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 637, 698
Hpy188III TCNNGA 3 cut(s) 118, 361, 490
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 115, 208
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 4 cut(s) 138, 161, 334, 476
HpyF10VI GCNNNNNNNGC 8 cut(s) 36, 62, 71, 109, 135, 144, 331, 408
HpyF3I CTNAG 2 cut(s) 366, 636
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 3 cut(s) 104, 622, 632
LguI GCTCTTC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 2 cut(s) 298, 460
MaeI CTAG 6 cut(s) 27, 269, 312, 534, 546, 654
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 106, 624, 634
MboI GATC 3 cut(s) 104, 622, 632
MboII GAAGA 6 cut(s) 22, 25, 106, 163, 505, 555
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 4 cut(s) 114, 135, 327, 489
MluCI AATT 5 cut(s) 76, 253, 395, 559, 599
MlyI GAGTC 3 cut(s) 212, 539, 647
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 5 cut(s) 148, 205, 233, 289, 475
MseI TTAA 3 cut(s) 258, 468, 645
MslI CAYNNNNRTG 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 3 cut(s) 179, 209, 232
MspR9I CCNGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 8 cut(s) 36, 62, 71, 109, 135, 144, 331, 408
NciI CCSGG 1 cut(s) 209
NdeI CATATG 1 cut(s) 661
NdeII GATC 3 cut(s) 104, 622, 632
NlaIII CATG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 334
NspV TTCGAA 2 cut(s) 350, 460
PciSI GCTCTTC 1 cut(s) 119
PctI GAATGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 46, 383
PinAI ACCGGT 1 cut(s) 231
PkrI GCNGC 3 cut(s) 102, 288, 475
Ple19I CGATCG 1 cut(s) 107
PleI GAGTC 3 cut(s) 212, 538, 646
PpsI GAGTC 3 cut(s) 212, 538, 646
PshAI GACNNNNGTC 1 cut(s) 279
PshBI ATTAAT 1 cut(s) 645
Psp124BI GAGCTC 3 cut(s) 135, 327, 489
PspFI CCCAGC 1 cut(s) 677
PsuI RGATCY 1 cut(s) 632
PvuI CGATCG 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 3 cut(s) 135, 327, 489
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 3 cut(s) 258, 468, 645
SatI GCNGC 3 cut(s) 101, 287, 474
Sau3AI GATC 3 cut(s) 104, 622, 632
SchI GAGTC 3 cut(s) 212, 539, 647
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 4 cut(s) 114, 135, 327, 489
SfuI TTCGAA 2 cut(s) 350, 460
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 467, 488
SmoI CTYRAG 2 cut(s) 467, 488
SpeI ACTAGT 1 cut(s) 545
Sse9I AATT 5 cut(s) 76, 253, 395, 559, 599
SsiI CCGC 2 cut(s) 100, 147
SspI AATATT 3 cut(s) 262, 649, 685
SspMI CTAG 6 cut(s) 27, 269, 312, 534, 546, 654
SstI GAGCTC 3 cut(s) 135, 327, 489
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 244, 350, 360, 460
TasI AATT 5 cut(s) 76, 253, 395, 559, 599
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 2 cut(s) 46, 383
Tru1I TTAA 3 cut(s) 258, 468, 645
Tru9I TTAA 3 cut(s) 258, 468, 645
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 286, 473
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 5 cut(s) 23, 453, 519, 555, 596
Vha464I CTTAAG 1 cut(s) 467
VspI ATTAAT 1 cut(s) 645
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 334
XspI CTAG 6 cut(s) 27, 269, 312, 534, 546, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.