Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008180

Physical Location & Seq

Genomic Coordinates Reverse (-)

74353106 .. 74354236

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG532000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCCTGCAAGATCTACCAGCTTCTCTTCTCAAAATGTGCGTTATTTGTCATTGCTTTGTCAAAATGATGAATCAGATGTGTGTGCAGCTAAGCTCGAAGAACTTCACTGGTATCAGAAATTGAGAACATTTATGTTGTTTTCCCAACCCCCTTCCAAGCTTTCTATGTCAGATAGCTTTCAAAAGTTGTTTGAGATATTCAAATGGTTAAGGGTTTTGAAGTTAACTGGTATCGGCATCCATAAGTTGTCTGGCCCCATCGACAAATTGAAACGCCTCCGCTACCTCGATCTAAGTGATACTAAGATTGCAAAGTTGCCACAGGAGATAGTAAATCTACTTGAGTTAGAAACACTTCAGCTCCAGAATTGTATTGAACTTAAAGATTGGCCTGAGAACTTTGAGAAGTTGGTTAAGCTGCGACACCTTCATAATGATAGACAGGGTCAAATGAGTTCCATGCCAAAAAACATCGGGAAATTAACTAGTCTCGAAATCCTGACAACTTTTGCAGTTGGAGGTGAAGAAGGATTTAAAATTGTGGAGCTTAAGAAGATGAACTGCCTTAGTGGATCCATTGAGATTACAAATCTCCAGAATGTGCCAGATGACATGAAGGCTGAAGATGTTATGTTATGCGAAAAGCAATACCTACACAAGGTGAAGTTGCATTGGGATGGAACAAGAGATATAGTTGAGCCTACAAGAATTCGTGATCAAGAAGTAATGAAGGGCCTTGAACCTAATTATAGGTTGAAAGAGTTGGAAATGAAAGGCTATTATGGTTCAAGATTGTCAGATTGGATTTACAACGACTTACCGTCTGTCAACACACCCACTCGTCAGATCGAGAAGCTTGTCCTTAGTTCTTGTCCAGAATTGTTAGAATTATCTTCACTTTCTCACCTGACTTCGCTTACAACATTAGAGATCCTCGAGTGCCCCAAGCTTACATCATTGCCAGTGAGAGGACTACTACCTAGCTCACTTGTGACTTTGAACATTTCAGAAAGTGGCATCTCAAGAGAGCAATGTGAGGACGGAGGCAGCATGCGGGAAACTGTCACATTTATTCTCGATGTACATATTAATGGTCACAAAATTCCAACGGAACGTTTGCCACGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

376

Amino Acids

43.1

Weight (kDa)

6.53

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	62 - 287	4.1e-24	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	180 - 314	2.2e-27	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001
rosa_multiflora	Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200180
rosa_rugosa	Rorug06G0036900 Rorug06G0038600
rosa_samantha	Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	280, 1054
AclI	AACGTT	1 cut(s)	1114
AclWI	GGATC	3 cut(s)	567, 580, 925
AcsI	RAATTY	2 cut(s)	708, 1101
AcuI	CTGAAG	2 cut(s)	341, 642
AdeI	CACNNNGTG	1 cut(s)	661
AfaI	GTAC	1 cut(s)	1083
AfiI	CCNNNNNNNGG	2 cut(s)	658, 968
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	9 cut(s)	182, 202, 220, 271, 377, 740, 757, 789, 1000
AhdI	GACNNNNNGTC	1 cut(s)	820
AhlI	ACTAGT	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	3 cut(s)	567, 580, 925
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	3 cut(s)	253, 389, 733
ApeKI	GCWGC	3 cut(s)	86, 418, 1047
ApoI	RAATTY	2 cut(s)	708, 1101
AseI	ATTAAT	1 cut(s)	1089
Asp700I	GAANNNNTTC	2 cut(s)	102, 354
AspS9I	GGNCC	2 cut(s)	254, 733
AsuHPI	GGTGA	3 cut(s)	533, 673, 896
AvaI	CYCGRG	1 cut(s)	935
BaeGI	GKGCMC	1 cut(s)	944
BamHI	GGATCC	1 cut(s)	572
BbvI	GCAGC	3 cut(s)	98, 405, 1059
BccI	CCATC	2 cut(s)	266, 671
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	494
BcuI	ACTAGT	1 cut(s)	485
BfaI	CTAG	2 cut(s)	486, 981
BfrI	CTTAAG	1 cut(s)	548
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	3 cut(s)	87, 419, 1048
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	3 cut(s)	88, 420, 1049
BmeRI	GACNNNNNGTC	1 cut(s)	820
BmeT110I	CYCGRG	1 cut(s)	935
BmgT120I	GGNCC	2 cut(s)	254, 733
BmiI	GGNNCC	2 cut(s)	256, 574
BmsI	GCATC	2 cut(s)	246, 1026
BpmI	CTGGAG	2 cut(s)	347, 578
Bpu1102I	GCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	362, 1006
BsaJI	CCNNGG	1 cut(s)	1121
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	658, 968
Bse1I	ACTGG	3 cut(s)	113, 232, 962
Bse3DI	GCAATG	3 cut(s)	50, 956, 1037
BseDI	CCNNGG	1 cut(s)	1121
BseGI	GGATG	2 cut(s)	237, 682
BseLI	CCNNNNNNNGG	2 cut(s)	658, 968
BseMI	GCAATG	3 cut(s)	50, 956, 1037
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	113, 232, 962
BseSI	GKGCMC	1 cut(s)	944
BseXI	GCAGC	3 cut(s)	98, 405, 1059
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	255, 391, 735
BsiHKCI	CYCGRG	1 cut(s)	935
BslI	CCNNNNNNNGG	2 cut(s)	658, 968
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	255, 391, 735
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	1 cut(s)	944
Bsp1407I	TGTACA	1 cut(s)	1081
Bsp143I	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	280, 1054
BspANI	GGCC	3 cut(s)	255, 391, 735
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	256, 574
BspPI	GGATC	3 cut(s)	567, 580, 925
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	3 cut(s)	50, 956, 1037
BsrGI	TGTACA	1 cut(s)	1081
BsrI	ACTGG	3 cut(s)	113, 232, 962
BssECI	CCNNGG	1 cut(s)	1121
BssMI	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
Bst4CI	ACNGT	2 cut(s)	822, 1063
Bst6I	CTCTTC	1 cut(s)	31
BstAFI	CTTAAG	1 cut(s)	548
BstAUI	TGTACA	1 cut(s)	1081
BstC8I	GCNNGC	2 cut(s)	6, 1052
BstDEI	CTNAG	6 cut(s)	90, 293, 303, 393, 566, 863
BstDSI	CCRYGG	1 cut(s)	1121
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	237, 682
BstKTI	GATC	6 cut(s)	14, 292, 575, 718, 849, 933
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
BstNSI	RCATGY	1 cut(s)	1054
BstSLI	GKGCMC	1 cut(s)	944
BstV1I	GCAGC	3 cut(s)	98, 405, 1059
BstX2I	RGATCY	3 cut(s)	11, 572, 930
BstYI	RGATCY	3 cut(s)	11, 572, 930
BsuRI	GGCC	3 cut(s)	255, 391, 735
BtgI	CCRYGG	1 cut(s)	1121
BtsCI	GGATG	2 cut(s)	237, 682
BtsIMutI	CAGTG	2 cut(s)	106, 969
Cac8I	GCNNGC	2 cut(s)	6, 1052
Cfr13I	GGNCC	2 cut(s)	254, 733
Csp6I	GTAC	1 cut(s)	1082
CviAII	CATG	3 cut(s)	460, 613, 1051
CviQI	GTAC	1 cut(s)	1082
DdeI	CTNAG	6 cut(s)	90, 293, 303, 393, 566, 863
DpnI	GATC	6 cut(s)	13, 291, 574, 717, 848, 932
DpnII	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
DraI	TTTAAA	1 cut(s)	535
DraIII	CACNNNGTG	1 cut(s)	661
DriI	GACNNNNNGTC	1 cut(s)	820
Eam1104I	CTCTTC	1 cut(s)	31
Eam1105I	GACNNNNNGTC	1 cut(s)	820
EarI	CTCTTC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	341, 642
Eco88I	CYCGRG	1 cut(s)	935
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoO109I	RGGNCCY	1 cut(s)	733
EcoRI	GAATTC	1 cut(s)	708
FaeI	CATG	3 cut(s)	463, 616, 1054
FatI	CATG	3 cut(s)	459, 612, 1050
FauI	CCCGC	1 cut(s)	1047
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	87, 419, 1048
FokI	GGATG	2 cut(s)	224, 689
Fsp4HI	GCNGC	3 cut(s)	87, 419, 1048
FspBI	CTAG	2 cut(s)	486, 981
GluI	GCNGC	3 cut(s)	87, 419, 1048
GsuI	CTGGAG	2 cut(s)	347, 578
HaeIII	GGCC	3 cut(s)	255, 391, 735
Hin1II	CATG	3 cut(s)	463, 616, 1054
HincII	GTYRAC	2 cut(s)	225, 829
HindII	GTYRAC	2 cut(s)	225, 829
HindIII	AAGCTT	3 cut(s)	158, 854, 947
HinfI	GANTC	1 cut(s)	71
HpaI	GTTAAC	1 cut(s)	225
HphI	GGTGA	3 cut(s)	533, 673, 896
Hpy166II	GTNNAC	2 cut(s)	225, 829
Hpy188I	TCNGA	6 cut(s)	76, 117, 172, 799, 846, 1009
Hpy8I	GTNNAC	2 cut(s)	225, 829
HpyAV	CCTTC	5 cut(s)	162, 437, 521, 610, 724
HpyCH4III	ACNGT	2 cut(s)	822, 1063
HpyCH4IV	ACGT	1 cut(s)	1114
HpyCH4V	TGCA	5 cut(s)	8, 86, 311, 512, 670
HpyF3I	CTNAG	6 cut(s)	90, 293, 303, 393, 566, 863
HpySE526I	ACGT	1 cut(s)	1114
Hsp92II	CATG	3 cut(s)	463, 616, 1054
Ksp22I	TGATCA	1 cut(s)	715
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
LmnI	GCTCC	2 cut(s)	366, 544
Lsp1109I	GCAGC	3 cut(s)	98, 405, 1059
LweI	GCATC	2 cut(s)	246, 1026
MaeI	CTAG	2 cut(s)	486, 981
MaeII	ACGT	1 cut(s)	1114
MaeIII	GTNAC	3 cut(s)	991, 1063, 1094
MalI	GATC	6 cut(s)	13, 291, 574, 717, 848, 932
MboI	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
MboII	GAAGA	6 cut(s)	18, 110, 536, 565, 635, 885
MflI	RGATCY	3 cut(s)	11, 572, 930
MhlI	GDGCHC	1 cut(s)	944
MmeI	TCCRAC	3 cut(s)	496, 744, 1130
MnlI	CCTC	7 cut(s)	287, 296, 512, 944, 962, 1030, 1037
MroXI	GAANNNNTTC	2 cut(s)	102, 354
MseI	TTAA	8 cut(s)	209, 224, 381, 414, 482, 534, 549, 1089
MslI	CAYNNNNRTG	3 cut(s)	675, 1089, 1126
MspCI	CTTAAG	1 cut(s)	548
NdeII	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
NlaIII	CATG	3 cut(s)	463, 616, 1054
NlaIV	GGNNCC	2 cut(s)	256, 574
NmuCI	GTSAC	3 cut(s)	991, 1063, 1094
NspI	RCATGY	1 cut(s)	1054
PaeI	GCATGC	1 cut(s)	1054
PaeR7I	CTCGAG	1 cut(s)	935
PdmI	GAANNNNTTC	2 cut(s)	102, 354
PfeI	GAWTC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	88, 420, 1049
PshBI	ATTAAT	1 cut(s)	1089
Psp1406I	AACGTT	1 cut(s)	1114
PspN4I	GGNNCC	2 cut(s)	256, 574
PspPI	GGNCC	2 cut(s)	254, 733
PspXI	VCTCGAGB	1 cut(s)	935
PsuI	RGATCY	3 cut(s)	11, 572, 930
PsyI	GACNNNGTC	1 cut(s)	444
RsaI	GTAC	1 cut(s)	1083
RsaNI	GTAC	1 cut(s)	1082
RseI	CAYNNNNRTG	3 cut(s)	675, 1089, 1126
SaqAI	TTAA	8 cut(s)	209, 224, 381, 414, 482, 534, 549, 1089
SatI	GCNGC	3 cut(s)	87, 419, 1048
Sau3AI	GATC	6 cut(s)	11, 289, 572, 715, 846, 930
Sau96I	GGNCC	2 cut(s)	254, 733
SduI	GDGCHC	1 cut(s)	944
SfaNI	GCATC	2 cut(s)	246, 1026
Sfr274I	CTCGAG	1 cut(s)	935
SlaI	CTCGAG	1 cut(s)	935
SmiMI	CAYNNNNRTG	3 cut(s)	675, 1089, 1126
SmlI	CTYRAG	4 cut(s)	341, 548, 935, 1021
SmoI	CTYRAG	4 cut(s)	341, 548, 935, 1021
SpeI	ACTAGT	1 cut(s)	485
SphI	GCATGC	1 cut(s)	1054
SsiI	CCGC	2 cut(s)	280, 1054
SspMI	CTAG	2 cut(s)	486, 981
TaaI	ACNGT	2 cut(s)	822, 1063
TaiI	ACGT	1 cut(s)	1117
TaqI	TCGA	7 cut(s)	96, 261, 288, 492, 849, 936, 1077
TatI	WGTACW	1 cut(s)	1081
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	8 cut(s)	209, 224, 381, 414, 482, 534, 549, 1089
Tru9I	TTAA	8 cut(s)	209, 224, 381, 414, 482, 534, 549, 1089
TscAI	CASTG	2 cut(s)	113, 969
TseFI	GTSAC	3 cut(s)	991, 1063, 1094
TseI	GCWGC	3 cut(s)	86, 418, 1047
Tsp45I	GTSAC	3 cut(s)	991, 1063, 1094
TspDTI	ATGAA	6 cut(s)	84, 419, 572, 629, 743, 785
TspGWI	ACGGA	2 cut(s)	1056, 1124
TspRI	CASTG	2 cut(s)	113, 969
Tth111I	GACNNNGTC	1 cut(s)	444
Vha464I	CTTAAG	1 cut(s)	548
VspI	ATTAAT	1 cut(s)	1089
XagI	CCTNNNNNAGG	1 cut(s)	656
XapI	RAATTY	2 cut(s)	708, 1101
XceI	RCATGY	1 cut(s)	1054
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	935
XmnI	GAANNNNTTC	2 cut(s)	102, 354
XspI	CTAG	2 cut(s)	486, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.