Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001839.1

Orthogroup ID

OG0008180

Physical Location & Seq

Genomic Coordinates Forward (+)

159279 .. 160016

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001839.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgaaatcgatgctggagtgtgcaacaagaaaggtgtgcaagttatcacacgaggatgttattaggaatcaattcgaagtggtgctgaacaagaagtttttacttgtattagatgacgtgtggaacgaggctccccatgattgggatgacttcaagttacttttcagacttgcgcatcccgggagcagggttatcgtaaccactaggagtacaactgtttcttccattgttacgtcgaatggtgacattttgtgtttggatatcttgtctcatgatcactgttggggcatcatcaagcatggtttaagaacaaacgttgaacagcgtccagatttgaaggagattggggtgaaattggcagaaaaatgtaaaggtgttcccttggtagctaaggtgattggggattacttgcgtatcaaatcagatcagagagaatgggatagcctgctgaactgtgaccttttgaacttggcagcggatgataacaacctctataatgttctcaagctgagttatgatcatttgccagcagatttaaaacgttgttttacctattgttctgtaattcctcaatgtcagagagttaaagtgcaggatttgattcagatgtgggctgcacaaggtttcattcaagctcaaggagcaagaagaattgatgaaataggaatggagtatttgttggaaaaattgaaaagaaatattgctgcaattatactctatatcaaatcacatagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

245

Amino Acids

28.14

Weight (kDa)

8.32

Isoelectric Point (pI)

26.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001
rosa_multiflora	Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200180
rosa_rugosa	Rorug06G0036900 Rorug06G0038600
rosa_samantha	Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
AciI	CCGC	1 cut(s)	476
AclI	AACGTT	2 cut(s)	315, 541
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	3 cut(s)	141, 142, 186
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	6 cut(s)	154, 320, 337, 466, 632, 691
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	3 cut(s)	389, 508, 635
AluI	AGCT	3 cut(s)	389, 508, 635
Alw26I	GTCTC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	179
ApeKI	GCWGC	3 cut(s)	473, 614, 704
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	175
AsuC2I	CCSGG	2 cut(s)	180, 181
AsuHPI	GGTGA	3 cut(s)	254, 361, 406
AsuII	TTCGAA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	179
BaeI	ACNNNNGTAYC	2 cut(s)	397, 430
BauI	CACGAG	1 cut(s)	50
BbvI	GCAGC	3 cut(s)	485, 601, 691
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BclI	TGATCA	2 cut(s)	274, 517
BcnI	CCSGG	2 cut(s)	180, 181
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	204
BisI	GCNGC	3 cut(s)	474, 615, 705
BlsI	GCNGC	3 cut(s)	475, 616, 706
Bme1390I	CCNGG	2 cut(s)	180, 181
BmeT110I	CYCGRG	1 cut(s)	179
BmgBI	CACGTC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	180, 181
BmsI	GCATC	2 cut(s)	184, 297
BpmI	CTGGAG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	488, 621
BpuMI	CCSGG	2 cut(s)	180, 181
Bsa29I	ATCGAT	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	179, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	662, 692
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 142, 186
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	179, 381
BseGI	GGATG	4 cut(s)	61, 151, 175, 484
BseLI	CCNNNNNNNGG	3 cut(s)	141, 142, 186
BseMII	CTCAG	1 cut(s)	500
BseXI	GCAGC	3 cut(s)	485, 601, 691
BsgI	GTGCAG	2 cut(s)	600, 611
BshVI	ATCGAT	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	141, 142, 186
BsmAI	GTCTC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	274, 424, 517
BspACI	CCGC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	501
BspDI	ATCGAT	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	179, 381
BssMI	GATC	3 cut(s)	274, 424, 517
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	50
Bst4CI	ACNGT	3 cut(s)	217, 281, 455
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	446, 528
BstDEI	CTNAG	2 cut(s)	390, 509
BstF5I	GGATG	4 cut(s)	61, 151, 175, 484
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	277, 427, 520
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	274, 424, 517
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	178, 179
BstV1I	GCAGC	3 cut(s)	485, 601, 691
Bsu15I	ATCGAT	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	4 cut(s)	61, 151, 175, 484
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	446, 528
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	175
Cfr9I	CCCGGG	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	8
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	137, 272, 299
CviJI	RGCY	6 cut(s)	131, 389, 444, 508, 614, 635
CviKI_1	RGCY	6 cut(s)	131, 389, 444, 508, 614, 635
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	390, 509
DpnI	GATC	3 cut(s)	276, 426, 519
DpnII	GATC	3 cut(s)	274, 424, 517
DraI	TTTAAA	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	179
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	140, 275, 302
FaiI	YATR	8 cut(s)	138, 273, 300, 495, 516, 713, 720, 732
FatI	CATG	3 cut(s)	136, 271, 298
FbaI	TGATCA	2 cut(s)	274, 517
Fnu4HI	GCNGC	3 cut(s)	474, 615, 705
FokI	GGATG	4 cut(s)	68, 158, 162, 491
Fsp4HI	GCNGC	3 cut(s)	474, 615, 705
FspBI	CTAG	1 cut(s)	204
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	474, 615, 705
GsuI	CTGGAG	1 cut(s)	35
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	140, 275, 302
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	67, 601
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	3 cut(s)	254, 361, 406
Hpy188I	TCNGA	5 cut(s)	167, 424, 429, 579, 606
Hpy188III	TCNNGA	2 cut(s)	272, 329
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	3 cut(s)	217, 281, 455
HpyCH4IV	ACGT	4 cut(s)	117, 233, 315, 541
HpyCH4V	TGCA	5 cut(s)	23, 39, 592, 617, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	2 cut(s)	390, 509
HpySE526I	ACGT	4 cut(s)	117, 233, 315, 541
Hsp92II	CATG	3 cut(s)	140, 275, 302
HspAI	GCGC	1 cut(s)	173
Ksp22I	TGATCA	2 cut(s)	274, 517
Kzo9I	GATC	3 cut(s)	274, 424, 517
LmnI	GCTCC	3 cut(s)	136, 183, 641
LpnPI	CCDG	6 cut(s)	172, 193, 342, 458, 540, 578
Lsp1109I	GCAGC	3 cut(s)	485, 601, 691
LweI	GCATC	2 cut(s)	184, 297
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	4 cut(s)	117, 233, 315, 541
MaeIII	GTNAC	5 cut(s)	156, 196, 229, 242, 455
MalI	GATC	3 cut(s)	276, 426, 519
MboI	GATC	3 cut(s)	274, 424, 517
MboII	GAAGA	2 cut(s)	213, 660
MluCI	AATT	6 cut(s)	71, 353, 564, 651, 686, 708
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	4 cut(s)	46, 121, 500, 579
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	305, 536, 585
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	180, 181
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	2 cut(s)	180, 181
NdeII	GATC	3 cut(s)	274, 424, 517
NlaIII	CATG	3 cut(s)	140, 275, 302
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	242, 455
NsbI	TGCGCA	1 cut(s)	174
NspV	TTCGAA	1 cut(s)	75
PagI	TCATGA	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	67, 601
PkrI	GCNGC	3 cut(s)	475, 616, 706
Psp1406I	AACGTT	2 cut(s)	315, 541
PspN4I	GGNNCC	1 cut(s)	132
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	305, 536, 585
SatI	GCNGC	3 cut(s)	474, 615, 705
Sau3AI	GATC	3 cut(s)	274, 424, 517
ScrFI	CCNGG	2 cut(s)	180, 181
SfaNI	GCATC	2 cut(s)	184, 297
SfuI	TTCGAA	1 cut(s)	75
SmaI	CCCGGG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	503, 636
SmoI	CTYRAG	2 cut(s)	503, 636
Sse9I	AATT	6 cut(s)	71, 353, 564, 651, 686, 708
SsiI	CCGC	1 cut(s)	476
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	178, 179
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	217, 281, 455
TaiI	ACGT	4 cut(s)	120, 236, 318, 544
TaqI	TCGA	3 cut(s)	8, 75, 236
TasI	AATT	6 cut(s)	71, 353, 564, 651, 686, 708
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	67, 601
Tru1I	TTAA	3 cut(s)	305, 536, 585
Tru9I	TTAA	3 cut(s)	305, 536, 585
TscAI	CASTG	1 cut(s)	284
TseFI	GTSAC	2 cut(s)	242, 455
TseI	GCWGC	3 cut(s)	473, 614, 704
Tsp45I	GTSAC	2 cut(s)	242, 455
TspDTI	ATGAA	3 cut(s)	17, 616, 672
TspMI	CCCGGG	1 cut(s)	179
TspRI	CASTG	1 cut(s)	284
XmaI	CCCGGG	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.