Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008180

Physical Location & Seq

Genomic Coordinates Forward (+)

26309867 .. 26311096

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGTATTTTAATGAGTTGTGCTCGAGGTGTCTTCTTCAAATTTCGTCCACAAGTGAGGTTAAACTGCATGACTTTATTCATGATTTTGCAAGGTTAGTTTCTGCCAACTTCTGCTTATGTGTGGATGATATGTCACGCTTCTTGAATGTGTCTTCAACTGTTCGTCATGTGTGCTTACTATATCAAGTTGATGATTCAGAAGTGTTAGCAGATCTGTTCAAAAAGTGTTGCACATATAAGAAATTGAGGACATTTATGTTGGTTTCCCACTTGGTGCAACCCCCTCGGGGTCTTCTTGAGTCTGAACTCTTTGAAAAGTTTTTTCAATCATTTCATCTGTTAAGGGTTTTAGATTTAAGTGGCAGTGGCATCCGTCGTTTGTCGAACTCGGTTGGAAACAATACATGTCTTCATTATCTCAACCTTAGCGGTACTCGGATCAAAGTTTTACCAGAAGGTGTAGGTAATCAGATTGGATTAGAAACATTTAACCTCCTAGATGGTCCATCTATTGTAGAATGGCCCTCAAACTTTGAGAAGTTGACTAAGCTTCGACACCTTTACTATAATAAGCAGGGTAATGGTAATATGCCAAGAGCATTGGGAAAACTAACGAGGTTGGAAACTTTGCATACATTTGTTGTGAAAAGCGAAGAAGGATATGAAATTGAGGAGCTGAAAGACATGAATTGCCTCTGCGGATCTATTCTTATCAGAGGTCTTGAGAATGTGAAAGATTTTCATAAGGCTAAGGCTGCCATGTTGGAAAATAAGAAATTTCTTGACAAATTAGAGTTGCAGTGGGCTCAACAAAGAGAGCCAACAGATGAGACAATGAATGTTGATAAAGAAGTACTTCGAGGCCTTAAACCTCATAATAGGTTGACTGAGTTGGAAATAAAAGCCTATCATGGTGCTAGTTTGCCGGATTGGTTGGGCAATGCCTCTTACAAGCTTGAGAAGCTTGTCATTGATTTGTGTGTAGAATTGGTCGGTCTACCTTCACTTCACTTAACTTCACTCAAGAAGTTAGAGATTCAGAGCTGCCCTGTATCATTGCCCCTGAGCGGACTACCTATCTCGCTTGAAAATCTGAATATTTTAGGAAGTGGCATAATAAAGCAGCAGTGTGAGCAAGGGGGTAGTGAGTGGGAAAAAATAAGATATATTCCCATAGTAGAAATTGATTGTCAGCGTATACCAACCCTGCCTTCTCCAATGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

409

Amino Acids

46.48

Weight (kDa)

6.47

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	109 - 327	4.5e-23	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	224 - 350	7.3e-31	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001
rosa_multiflora	Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200180
rosa_rugosa	Rorug06G0036900 Rorug06G0038600
rosa_samantha	Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1071
AccI	GTMKAC	2 cut(s)	1000, 1201
AciI	CCGC	3 cut(s)	432, 702, 1071
AclWI	GGATC	2 cut(s)	449, 712
AcsI	RAATTY	2 cut(s)	42, 779
AdeI	CACNNNGTG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	436, 858
AfiI	CCNNNNNNNGG	2 cut(s)	290, 1070
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	7 cut(s)	41, 148, 159, 223, 317, 329, 1091
AjuI	GAANNNNNNNTTGG	2 cut(s)	1198, 1230
AluBI	AGCT	5 cut(s)	553, 679, 958, 967, 1047
AluI	AGCT	5 cut(s)	553, 679, 958, 967, 1047
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	827
AlwI	GGATC	2 cut(s)	449, 712
Ama87I	CYCGRG	2 cut(s)	25, 288
AoxI	GGCC	2 cut(s)	524, 865
ApeKI	GCWGC	3 cut(s)	758, 1047, 1126
ApoI	RAATTY	2 cut(s)	42, 779
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	506, 525
AvaI	CYCGRG	2 cut(s)	25, 288
AvaII	GGWCC	1 cut(s)	506
BanII	GRGCYC	1 cut(s)	811
BbsI	GAAGAC	4 cut(s)	26, 147, 287, 404
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	745, 1034, 1138
BccI	CCATC	2 cut(s)	497, 517
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BcoDI	GTCTC	1 cut(s)	827
BfaI	CTAG	2 cut(s)	500, 921
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	3 cut(s)	759, 1048, 1127
BlsI	GCNGC	3 cut(s)	760, 1049, 1128
BmcAI	AGTACT	1 cut(s)	858
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	2 cut(s)	25, 288
BmgT120I	GGNCC	2 cut(s)	506, 525
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	4 cut(s)	26, 147, 287, 404
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
Bpu10I	CCTNAGC	3 cut(s)	428, 753, 1067
BpuEI	CTTGAG	4 cut(s)	320, 746, 980, 1010
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 1070
Bse3DI	GCAATG	2 cut(s)	949, 1058
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	133, 372
BseLI	CCNNNNNNNGG	2 cut(s)	290, 1070
BseMI	GCAATG	2 cut(s)	949, 1058
BseMII	CTCAG	2 cut(s)	882, 1058
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	3 cut(s)	745, 1034, 1138
BshFI	GGCC	2 cut(s)	526, 867
BsiHKAI	GWGCWC	1 cut(s)	26
BsiHKCI	CYCGRG	2 cut(s)	25, 288
BsiSI	CCGG	1 cut(s)	929
BslI	CCNNNNNNNGG	2 cut(s)	290, 1070
BsmAI	GTCTC	1 cut(s)	827
BsnI	GGCC	2 cut(s)	526, 867
BsoBI	CYCGRG	2 cut(s)	25, 288
Bsp1286I	GDGCHC	2 cut(s)	26, 811
Bsp143I	GATC	3 cut(s)	214, 441, 704
BspACI	CCGC	3 cut(s)	432, 702, 1071
BspANI	GGCC	2 cut(s)	526, 867
BspCNI	CTCAG	2 cut(s)	883, 1059
BspHI	TCATGA	1 cut(s)	82
BspPI	GGATC	2 cut(s)	449, 712
BsrBI	CCGCTC	1 cut(s)	1071
BsrDI	GCAATG	2 cut(s)	949, 1058
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	214, 441, 704
BssNAI	GTATAC	1 cut(s)	1202
Bst1107I	GTATAC	1 cut(s)	1202
Bst4CI	ACNGT	1 cut(s)	163
BstDEI	CTNAG	5 cut(s)	428, 549, 753, 891, 1067
BstF5I	GGATG	2 cut(s)	133, 372
BstKTI	GATC	3 cut(s)	217, 444, 707
BstMAI	GTCTC	1 cut(s)	827
BstMBI	GATC	3 cut(s)	214, 441, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	758, 964, 1135
BstNSI	RCATGY	1 cut(s)	411
BstV1I	GCAGC	3 cut(s)	745, 1034, 1138
BstV2I	GAAGAC	4 cut(s)	26, 147, 287, 404
BstX2I	RGATCY	2 cut(s)	214, 704
BstYI	RGATCY	2 cut(s)	214, 704
BstZ17I	GTATAC	1 cut(s)	1202
BsuRI	GGCC	2 cut(s)	526, 867
BtsCI	GGATG	2 cut(s)	133, 372
BtsI	GCAGTG	3 cut(s)	373, 809, 1136
BtsIMutI	CAGTG	3 cut(s)	373, 809, 1136
CciI	TCATGA	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	506, 525
Csp6I	GTAC	2 cut(s)	435, 857
CviAII	CATG	8 cut(s)	71, 83, 170, 408, 688, 763, 914, 1227
CviQI	GTAC	2 cut(s)	435, 857
DdeI	CTNAG	5 cut(s)	428, 549, 753, 891, 1067
DpnI	GATC	3 cut(s)	216, 443, 706
DpnII	GATC	3 cut(s)	214, 441, 704
DraIII	CACNNNGTG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	867
Eco24I	GRGCYC	1 cut(s)	811
Eco47I	GGWCC	1 cut(s)	506
Eco88I	CYCGRG	2 cut(s)	25, 288
EcoT38I	GRGCYC	1 cut(s)	811
FaeI	CATG	8 cut(s)	74, 86, 173, 411, 691, 766, 917, 1230
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FatI	CATG	8 cut(s)	70, 82, 169, 407, 687, 762, 913, 1226
FblI	GTMKAC	2 cut(s)	1000, 1201
Fnu4HI	GCNGC	3 cut(s)	759, 1048, 1127
FokI	GGATG	2 cut(s)	140, 359
FriOI	GRGCYC	1 cut(s)	811
Fsp4HI	GCNGC	3 cut(s)	759, 1048, 1127
FspBI	CTAG	2 cut(s)	500, 921
GluI	GCNGC	3 cut(s)	759, 1048, 1127
HaeIII	GGCC	2 cut(s)	526, 867
HapII	CCGG	1 cut(s)	929
Hin1II	CATG	8 cut(s)	74, 86, 173, 411, 691, 766, 917, 1230
HincII	GTYRAC	2 cut(s)	546, 888
HindII	GTYRAC	2 cut(s)	546, 888
HindIII	AAGCTT	3 cut(s)	551, 956, 965
HinfI	GANTC	3 cut(s)	197, 302, 1039
HpaII	CCGG	1 cut(s)	929
Hpy166II	GTNNAC	5 cut(s)	51, 546, 888, 1001, 1202
Hpy188I	TCNGA	7 cut(s)	202, 307, 441, 474, 719, 1044, 1098
Hpy188III	TCNNGA	6 cut(s)	83, 145, 299, 725, 785, 1027
Hpy8I	GTNNAC	5 cut(s)	51, 546, 888, 1001, 1202
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	4 cut(s)	452, 653, 1014, 1224
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	70, 92, 234, 280, 634, 802
HpyF10VI	GCNNNNNNNGC	3 cut(s)	758, 964, 1135
HpyF3I	CTNAG	5 cut(s)	428, 549, 753, 891, 1067
Hsp92II	CATG	8 cut(s)	74, 86, 173, 411, 691, 766, 917, 1230
Kzo9I	GATC	3 cut(s)	214, 441, 704
LmnI	GCTCC	1 cut(s)	676
LpnPI	CCDG	6 cut(s)	468, 563, 942, 1065, 1079, 1223
Lsp1109I	GCAGC	3 cut(s)	745, 1034, 1138
LweI	GCATC	1 cut(s)	381
MaeI	CTAG	2 cut(s)	500, 921
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	3 cut(s)	216, 443, 706
MbiI	CCGCTC	1 cut(s)	1071
MboI	GATC	3 cut(s)	214, 441, 704
MboII	GAAGA	6 cut(s)	26, 29, 147, 287, 404, 668
MflI	RGATCY	2 cut(s)	214, 704
MhlI	GDGCHC	2 cut(s)	26, 811
MluCI	AATT	8 cut(s)	42, 245, 669, 691, 779, 791, 989, 1185
MlyI	GAGTC	1 cut(s)	311
MmeI	TCCRAC	4 cut(s)	376, 603, 747, 876
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	7 cut(s)	12, 63, 344, 359, 492, 870, 1016
MspI	CCGG	1 cut(s)	929
MwoI	GCNNNNNNNGC	3 cut(s)	758, 964, 1135
NdeII	GATC	3 cut(s)	214, 441, 704
NlaIII	CATG	8 cut(s)	74, 86, 173, 411, 691, 766, 917, 1230
NmuCI	GTSAC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	411
PaeR7I	CTCGAG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	867
PciI	ACATGT	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	2 cut(s)	197, 1039
PkrI	GCNGC	3 cut(s)	760, 1049, 1128
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PscI	ACATGT	1 cut(s)	407
PspPI	GGNCC	2 cut(s)	506, 525
PspXI	VCTCGAGB	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	214, 704
RsaI	GTAC	2 cut(s)	436, 858
RsaNI	GTAC	2 cut(s)	435, 857
SaqAI	TTAA	7 cut(s)	12, 63, 344, 359, 492, 870, 1016
SatI	GCNGC	3 cut(s)	759, 1048, 1127
Sau3AI	GATC	3 cut(s)	214, 441, 704
Sau96I	GGNCC	2 cut(s)	506, 525
ScaI	AGTACT	1 cut(s)	858
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	26, 811
SfaNI	GCATC	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	25
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	25
SmlI	CTYRAG	5 cut(s)	25, 299, 725, 959, 1025
SmoI	CTYRAG	5 cut(s)	25, 299, 725, 959, 1025
Sse9I	AATT	8 cut(s)	42, 245, 669, 691, 779, 791, 989, 1185
SseBI	AGGCCT	1 cut(s)	867
SsiI	CCGC	3 cut(s)	432, 702, 1071
SspI	AATATT	1 cut(s)	1102
SspMI	CTAG	2 cut(s)	500, 921
StuI	AGGCCT	1 cut(s)	867
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	4 cut(s)	26, 386, 556, 862
TaqII	GACCGA	1 cut(s)	986
TasI	AATT	8 cut(s)	42, 245, 669, 691, 779, 791, 989, 1185
TatI	WGTACW	1 cut(s)	856
TfiI	GAWTC	2 cut(s)	197, 1039
Tru1I	TTAA	7 cut(s)	12, 63, 344, 359, 492, 870, 1016
Tru9I	TTAA	7 cut(s)	12, 63, 344, 359, 492, 870, 1016
TscAI	CASTG	3 cut(s)	373, 809, 1136
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	3 cut(s)	758, 1047, 1126
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	7 cut(s)	71, 326, 404, 681, 704, 734, 854
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	3 cut(s)	373, 809, 1136
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	2 cut(s)	42, 779
XceI	RCATGY	1 cut(s)	411
XhoI	CTCGAG	1 cut(s)	25
XmiI	GTMKAC	2 cut(s)	1000, 1201
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	2 cut(s)	500, 921
ZrmI	AGTACT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.