Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008180

Physical Location & Seq

Genomic Coordinates Reverse (-)

80645811 .. 80647260

Gene Structure 1450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG508300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTTGTTTTCCCAACCCCCTTCCAAGCTTTCTATGTCAGATAGCTTTCAAAAGTTGTTTGAGATATTCAAATGGTTAAGGGTTTTGAAGTTAACTGGTATCGGCATCCATAAGTTGTCTGGCCCCATCGACAAATTGAAACGCCTCCGCTACCTCGATCTAAGTGATACTAAGATTGCAAAGTTGCCACAGGAGATAGTAAATCTACTTGAGTTAGAAACACTTCAGCTCCAGAATTGTATTGAACTTAAAGATTGGCCTGAGAACTTTGAGAAGTTGGTTAAGCTGCGACACCTTCATAATGATAGACAGGGTCAAATGAGTTCCATGCCAAAAAACATCGGGAAATTAACTAGTCTCGAAATCCTGACAACTTTTGCAGTTGGAGGTGAAGAAGGATTTAAAATTGTGGAGCTTAAGAAGATGAACTGCCTTAGTGGATCCATTGAGATTACAAATCTCCAGAATGTGCCAGATGACATGAAGGCTGAAGATGTTATGTTATGCGAAAAGCAATACCTACACAAGGTGAAGTTGCATTGGGATGGAACAAGAGATATAGTTGAGCCTACAAGAATTCGTGATCAAGAAGTAATGAAGGGCCTTGAACCTAATTATAGGTTGAAAGAGTTGGAAATGAAAGGCTATTATGGTTCAAGATTGTCAGATTGGATTTACAACGACTTACCGTCTGTCAACACACCCACTCGTCAGATCGAGAAGCTTGTCCTTAGTTCTTGTCCAGAATTGTTAGAATTATCTTCACTTTCTCACCTGACTTCGCTTACAACATTAGAGATCCTCGAGTGCCCCAAGCTTACATCATTGCCAGTGAGAGGACTACTACCTAGCTCACTTGTGACTTTGAACATTTCAGAAAGTGGCATCTCAAGAGAGCAATGTGAGGACGGAGGCAGCATGCGGGAAACTGTCACATTTATTCTCGATAACAGTTCTGAGTTTGATAACAGAAAATCCTCTTATGTTGTGGCCTCTCTACTTGAAGCAGCTTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

339

Amino Acids

38.67

Weight (kDa)

5.97

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	20 - 226	2.1e-25	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	136 - 270	1.9e-27	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001
rosa_multiflora	Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200180
rosa_rugosa	Rorug06G0036900 Rorug06G0038600
rosa_samantha	Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	148, 922
AclWI	GGATC	3 cut(s)	435, 448, 793
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	2 cut(s)	209, 510
AdeI	CACNNNGTG	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	526, 836
AflII	CTTAAG	1 cut(s)	416
AhdI	GACNNNNNGTC	1 cut(s)	688
AhlI	ACTAGT	1 cut(s)	353
AluBI	AGCT	9 cut(s)	28, 45, 229, 286, 415, 724, 817, 852, 1010
AluI	AGCT	9 cut(s)	28, 45, 229, 286, 415, 724, 817, 852, 1010
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	3 cut(s)	435, 448, 793
Ama87I	CYCGRG	1 cut(s)	803
AoxI	GGCC	4 cut(s)	121, 257, 601, 990
ApeKI	GCWGC	3 cut(s)	286, 915, 1007
ApoI	RAATTY	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	122, 601
AsuHPI	GGTGA	3 cut(s)	401, 541, 764
AvaI	CYCGRG	1 cut(s)	803
BaeGI	GKGCMC	1 cut(s)	812
BamHI	GGATCC	1 cut(s)	440
BbvI	GCAGC	2 cut(s)	273, 927
BccI	CCATC	2 cut(s)	134, 539
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	362
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	2 cut(s)	354, 849
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	3 cut(s)	287, 916, 1008
BlsI	GCNGC	3 cut(s)	288, 917, 1009
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmeT110I	CYCGRG	1 cut(s)	803
BmgT120I	GGNCC	2 cut(s)	122, 601
BmiI	GGNNCC	2 cut(s)	124, 442
BmsI	GCATC	2 cut(s)	114, 894
BpmI	CTGGAG	2 cut(s)	215, 446
BpuEI	CTTGAG	2 cut(s)	230, 874
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 836
Bse1I	ACTGG	2 cut(s)	100, 830
Bse3DI	GCAATG	2 cut(s)	824, 905
BseGI	GGATG	2 cut(s)	105, 550
BseLI	CCNNNNNNNGG	2 cut(s)	526, 836
BseMI	GCAATG	2 cut(s)	824, 905
BseMII	CTCAG	2 cut(s)	252, 948
BseNI	ACTGG	2 cut(s)	100, 830
BseSI	GKGCMC	1 cut(s)	812
BseXI	GCAGC	2 cut(s)	273, 927
BshFI	GGCC	4 cut(s)	123, 259, 603, 992
BsiHKCI	CYCGRG	1 cut(s)	803
BslI	CCNNNNNNNGG	2 cut(s)	526, 836
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	4 cut(s)	123, 259, 603, 992
BsoBI	CYCGRG	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp143I	GATC	5 cut(s)	157, 440, 583, 714, 798
BspACI	CCGC	2 cut(s)	148, 922
BspANI	GGCC	4 cut(s)	123, 259, 603, 992
BspCNI	CTCAG	2 cut(s)	253, 949
BspLI	GGNNCC	2 cut(s)	124, 442
BspPI	GGATC	3 cut(s)	435, 448, 793
BspTI	CTTAAG	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	824, 905
BsrI	ACTGG	2 cut(s)	100, 830
BssMI	GATC	5 cut(s)	157, 440, 583, 714, 798
Bst4CI	ACNGT	3 cut(s)	690, 931, 953
BstAFI	CTTAAG	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	920
BstDEI	CTNAG	6 cut(s)	161, 171, 261, 434, 731, 957
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	105, 550
BstKTI	GATC	5 cut(s)	160, 443, 586, 717, 801
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	5 cut(s)	157, 440, 583, 714, 798
BstNSI	RCATGY	1 cut(s)	922
BstSLI	GKGCMC	1 cut(s)	812
BstV1I	GCAGC	2 cut(s)	273, 927
BstX2I	RGATCY	2 cut(s)	440, 798
BstYI	RGATCY	2 cut(s)	440, 798
BsuRI	GGCC	4 cut(s)	123, 259, 603, 992
BtsCI	GGATG	2 cut(s)	105, 550
BtsIMutI	CAGTG	1 cut(s)	837
Cac8I	GCNNGC	1 cut(s)	920
Cfr13I	GGNCC	2 cut(s)	122, 601
CviAII	CATG	3 cut(s)	328, 481, 919
DdeI	CTNAG	6 cut(s)	161, 171, 261, 434, 731, 957
DpnI	GATC	5 cut(s)	159, 442, 585, 716, 800
DpnII	GATC	5 cut(s)	157, 440, 583, 714, 798
DraI	TTTAAA	1 cut(s)	403
DraIII	CACNNNGTG	1 cut(s)	529
DriI	GACNNNNNGTC	1 cut(s)	688
Eam1105I	GACNNNNNGTC	1 cut(s)	688
Eco57I	CTGAAG	2 cut(s)	209, 510
Eco88I	CYCGRG	1 cut(s)	803
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	576
FaeI	CATG	3 cut(s)	331, 484, 922
FatI	CATG	3 cut(s)	327, 480, 918
FauI	CCCGC	1 cut(s)	915
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	3 cut(s)	287, 916, 1008
FokI	GGATG	2 cut(s)	92, 557
Fsp4HI	GCNGC	3 cut(s)	287, 916, 1008
FspBI	CTAG	2 cut(s)	354, 849
GluI	GCNGC	3 cut(s)	287, 916, 1008
GsuI	CTGGAG	2 cut(s)	215, 446
HaeIII	GGCC	4 cut(s)	123, 259, 603, 992
Hin1II	CATG	3 cut(s)	331, 484, 922
HincII	GTYRAC	2 cut(s)	93, 697
HindII	GTYRAC	2 cut(s)	93, 697
HindIII	AAGCTT	3 cut(s)	26, 722, 815
HpaI	GTTAAC	1 cut(s)	93
HphI	GGTGA	3 cut(s)	401, 541, 764
Hpy166II	GTNNAC	2 cut(s)	93, 697
Hpy188I	TCNGA	5 cut(s)	40, 667, 714, 877, 958
Hpy8I	GTNNAC	2 cut(s)	93, 697
HpyAV	CCTTC	5 cut(s)	30, 305, 389, 478, 592
HpyCH4III	ACNGT	3 cut(s)	690, 931, 953
HpyCH4V	TGCA	3 cut(s)	179, 380, 538
HpyF3I	CTNAG	6 cut(s)	161, 171, 261, 434, 731, 957
Hsp92II	CATG	3 cut(s)	331, 484, 922
Ksp22I	TGATCA	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	157, 440, 583, 714, 798
LmnI	GCTCC	2 cut(s)	234, 412
Lsp1109I	GCAGC	2 cut(s)	273, 927
LweI	GCATC	2 cut(s)	114, 894
MaeI	CTAG	2 cut(s)	354, 849
MaeIII	GTNAC	2 cut(s)	859, 931
MalI	GATC	5 cut(s)	159, 442, 585, 716, 800
MboI	GATC	5 cut(s)	157, 440, 583, 714, 798
MboII	GAAGA	4 cut(s)	404, 433, 503, 753
MflI	RGATCY	2 cut(s)	440, 798
MhlI	GDGCHC	1 cut(s)	812
MluCI	AATT	8 cut(s)	134, 235, 347, 405, 576, 613, 746, 755
MmeI	TCCRAC	2 cut(s)	364, 612
MnlI	CCTC	9 cut(s)	155, 164, 380, 812, 830, 898, 905, 988, 1003
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	7 cut(s)	77, 92, 249, 282, 350, 402, 417
MslI	CAYNNNNRTG	1 cut(s)	543
MspCI	CTTAAG	1 cut(s)	416
NdeII	GATC	5 cut(s)	157, 440, 583, 714, 798
NlaIII	CATG	3 cut(s)	331, 484, 922
NlaIV	GGNNCC	2 cut(s)	124, 442
NmuCI	GTSAC	2 cut(s)	859, 931
NspI	RCATGY	1 cut(s)	922
PaeI	GCATGC	1 cut(s)	922
PaeR7I	CTCGAG	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	222
PflFI	GACNNNGTC	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	288, 917, 1009
PspN4I	GGNNCC	2 cut(s)	124, 442
PspPI	GGNCC	2 cut(s)	122, 601
PspXI	VCTCGAGB	1 cut(s)	803
PsuI	RGATCY	2 cut(s)	440, 798
PsyI	GACNNNGTC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	7 cut(s)	77, 92, 249, 282, 350, 402, 417
SatI	GCNGC	3 cut(s)	287, 916, 1008
Sau3AI	GATC	5 cut(s)	157, 440, 583, 714, 798
Sau96I	GGNCC	2 cut(s)	122, 601
SduI	GDGCHC	1 cut(s)	812
SfaNI	GCATC	2 cut(s)	114, 894
Sfr274I	CTCGAG	1 cut(s)	803
SlaI	CTCGAG	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	4 cut(s)	209, 416, 803, 889
SmoI	CTYRAG	4 cut(s)	209, 416, 803, 889
SpeI	ACTAGT	1 cut(s)	353
SphI	GCATGC	1 cut(s)	922
Sse9I	AATT	8 cut(s)	134, 235, 347, 405, 576, 613, 746, 755
SsiI	CCGC	2 cut(s)	148, 922
SspMI	CTAG	2 cut(s)	354, 849
TaaI	ACNGT	3 cut(s)	690, 931, 953
TaqI	TCGA	6 cut(s)	129, 156, 360, 717, 804, 945
TasI	AATT	8 cut(s)	134, 235, 347, 405, 576, 613, 746, 755
Tru1I	TTAA	7 cut(s)	77, 92, 249, 282, 350, 402, 417
Tru9I	TTAA	7 cut(s)	77, 92, 249, 282, 350, 402, 417
TscAI	CASTG	1 cut(s)	837
TseFI	GTSAC	2 cut(s)	859, 931
TseI	GCWGC	3 cut(s)	286, 915, 1007
Tsp45I	GTSAC	2 cut(s)	859, 931
TspDTI	ATGAA	5 cut(s)	287, 440, 497, 611, 653
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	1 cut(s)	837
Tth111I	GACNNNGTC	1 cut(s)	312
Vha464I	CTTAAG	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	1 cut(s)	576
XceI	RCATGY	1 cut(s)	922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	2 cut(s)	354, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.