Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004590.1

Orthogroup ID

OG0008180

Physical Location & Seq

Genomic Coordinates Forward (+)

30467 .. 34349

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004590.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atggttgttgggacgtttaacatgagaatgtggtgggtatgtgtttccttggagtatgatctgattcagatcactaaagcaatcctcgaggataccacaagcaaagtttgcacactgtcacatctcgactctattaaaaggcaattgaaaaagatgatggagaagtttttgctcgtactggacgatatgtggaatgagagtccaagtgattggaatgccatgaaattgttttttagctttgcagcacctgggagtagggttctgttagcagagaagtgtaatggccttcctttggcagccacagtgattagagatgccttgcatctcaaatcaaacgagcggaaggcttcattaaagcccaaggagcaagaagaattgaagactttggaagggagtacttggaggaattgtgttcgaggtactaaatcaaatgtgtctggagccaagcttgaagaatcttacagtggcatccgtaagttgtctggtgccatcgaagaattgaaacaccttcgctacctcgatttgagtacaactgctattgtatatttgccagaaggcatagtagatctacttgagttagaaacacgtcagcttgggaattgtactgaacttaaacagtggccagagaaccatgagaatttggttaagctgcgacaccttcattttaatagaccacgtcaaatgagttccatgccaaaaaaaaacttggggaaattgactagtcttgaaagcctaacagcttttgctgtcaaaggtgaagcaggatatgaaatcgaggagcttcaaaacatgaactgccttcgtggatccattagcattaaagatcttgagaatgtagcaaattcccaaaaggctcgggacgctgagttacaagacaagaaattcctagagacattggtgttgcaatggaagaaaaatgctgcaattgaagcagaagttctggagcatcttgaacctcattataggttgaaaaagttggaagtaaaaggctatcatggttcaaaattgccaaattggatctgtaggccagcctctgtcaacatgccctctcgtcagatcgagaagtttgtccttcgtacttgtccagaattggtaaccttaccttcaatatgtcacctaacttcacttaaaaagttagagattgacggttgcggcaagcttgcatcattgccagtggagggactacctagctcactcgaaagtttgaagatttcacagactcgcatatctcaaagcagatgtgcgaggagggtggcactgagcgggaaaatgtcagatctattcctgaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

430

Amino Acids

48.78

Weight (kDa)

9.02

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001
rosa_multiflora	Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200180
rosa_rugosa	Rorug06G0036900 Rorug06G0038600
rosa_samantha	Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	485
AccBSI	CCGCTC	2 cut(s)	340, 1263
AciI	CCGC	3 cut(s)	340, 1152, 1263
AclWI	GGATC	3 cut(s)	801, 814, 1025
AcoI	YGGCCR	1 cut(s)	620
AcsI	RAATTY	3 cut(s)	637, 841, 881
AfaI	GTAC	6 cut(s)	177, 397, 421, 529, 604, 1078
AfiI	CCNNNNNNNGG	2 cut(s)	292, 1178
AflIII	ACRYGT	1 cut(s)	584
AhlI	ACTAGT	1 cut(s)	719
AjiI	CACGTC	2 cut(s)	587, 677
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	8 cut(s)	237, 448, 592, 649, 740, 781, 1159, 1191
AluI	AGCT	8 cut(s)	237, 448, 592, 649, 740, 781, 1159, 1191
Alw26I	GTCTC	1 cut(s)	884
AlwI	GGATC	3 cut(s)	801, 814, 1025
AlwNI	CAGNNNCTG	2 cut(s)	248, 1034
Ama87I	CYCGRG	2 cut(s)	86, 855
AoxI	GGCC	3 cut(s)	283, 620, 1025
ApeKI	GCWGC	4 cut(s)	242, 296, 649, 920
ApoI	RAATTY	3 cut(s)	637, 841, 881
AsuHPI	GGTGA	2 cut(s)	767, 1106
AvaI	CYCGRG	2 cut(s)	86, 855
AxyI	CCTNAGG	1 cut(s)	1286
BalI	TGGCCA	1 cut(s)	622
BamHI	GGATCC	1 cut(s)	806
BanI	GGYRCC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	4 cut(s)	254, 308, 636, 907
BccI	CCATC	2 cut(s)	151, 497
BciT130I	CCWGG	1 cut(s)	249
BciVI	GTATCC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	884
BcuI	ACTAGT	1 cut(s)	719
BfaI	CTAG	3 cut(s)	720, 887, 1188
BfmI	CTRYAG	1 cut(s)	1021
BfuI	GTATCC	1 cut(s)	85
BglII	AGATCT	3 cut(s)	565, 823, 1276
BisI	GCNGC	5 cut(s)	243, 297, 650, 921, 1153
BlsI	GCNGC	5 cut(s)	244, 298, 651, 922, 1154
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	249
BmeT110I	CYCGRG	2 cut(s)	86, 855
BmgBI	CACGTC	2 cut(s)	587, 677
BmiI	GGNNCC	3 cut(s)	442, 487, 808
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	5 cut(s)	304, 331, 477, 955, 1172
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	2 cut(s)	459, 962
BpuEI	CTTGAG	2 cut(s)	593, 848
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	48, 248, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 1178
Bse1I	ACTGG	2 cut(s)	183, 1172
Bse21I	CCTNAGG	1 cut(s)	1286
Bse3DI	GCAATG	2 cut(s)	911, 1166
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	3 cut(s)	48, 248, 360
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	292, 1178
BseMI	GCAATG	2 cut(s)	911, 1166
BseMII	CTCAG	3 cut(s)	855, 1250, 1277
BseNI	ACTGG	2 cut(s)	183, 1172
BseRI	GAGGAG	2 cut(s)	791, 1261
BseXI	GCAGC	4 cut(s)	254, 308, 636, 907
BshFI	GGCC	3 cut(s)	285, 622, 1027
BshNI	GGYRCC	1 cut(s)	485
BsiHKCI	CYCGRG	2 cut(s)	86, 855
BslFI	GGGAC	3 cut(s)	25, 872, 1194
BslI	CCNNNNNNNGG	2 cut(s)	292, 1178
BsmAI	GTCTC	1 cut(s)	884
BsmFI	GGGAC	3 cut(s)	25, 872, 1194
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	285, 622, 1027
BsoBI	CYCGRG	2 cut(s)	86, 855
Bsp143I	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
BspACI	CCGC	3 cut(s)	340, 1152, 1263
BspANI	GGCC	3 cut(s)	285, 622, 1027
BspCNI	CTCAG	3 cut(s)	856, 1251, 1278
BspLI	GGNNCC	3 cut(s)	442, 487, 808
BspPI	GGATC	3 cut(s)	801, 814, 1025
BspT107I	GGYRCC	1 cut(s)	485
BsrBI	CCGCTC	2 cut(s)	340, 1263
BsrDI	GCAATG	2 cut(s)	911, 1166
BsrI	ACTGG	2 cut(s)	183, 1172
BssECI	CCNNGG	3 cut(s)	48, 248, 360
BssMI	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
BssT1I	CCWWGG	2 cut(s)	48, 360
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	5 cut(s)	117, 304, 464, 618, 1148
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	1029, 1157, 1161
BstDEI	CTNAG	3 cut(s)	864, 1259, 1286
BstEII	GGTNACC	1 cut(s)	1093
BstF5I	GGATG	1 cut(s)	468
BstKTI	GATC	8 cut(s)	61, 72, 568, 809, 826, 1020, 1059, 1279
BstMAI	GTCTC	1 cut(s)	884
BstMBI	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 364, 860, 929
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	1045
BstPI	GGTNACC	1 cut(s)	1093
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	1021
BstV1I	GCAGC	4 cut(s)	254, 308, 636, 907
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	5 cut(s)	565, 806, 823, 1017, 1276
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	5 cut(s)	565, 806, 823, 1017, 1276
Bsu36I	CCTNAGG	1 cut(s)	1286
BsuI	GTATCC	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	285, 622, 1027
BtrI	CACGTC	2 cut(s)	587, 677
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	6 cut(s)	113, 309, 469, 623, 1179, 1256
Cac8I	GCNNGC	3 cut(s)	1029, 1157, 1161
CaiI	CAGNNNCTG	2 cut(s)	248, 1034
CseI	GACGC	1 cut(s)	869
Csp6I	GTAC	6 cut(s)	176, 396, 420, 528, 603, 1077
CviAII	CATG	7 cut(s)	22, 220, 632, 691, 790, 995, 1042
CviQI	GTAC	6 cut(s)	176, 396, 420, 528, 603, 1077
DdeI	CTNAG	3 cut(s)	864, 1259, 1286
DpnI	GATC	8 cut(s)	60, 71, 567, 808, 825, 1019, 1058, 1278
DpnII	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
EaeI	YGGCCR	1 cut(s)	620
Eco130I	CCWWGG	2 cut(s)	48, 360
Eco81I	CCTNAGG	1 cut(s)	1286
Eco88I	CYCGRG	2 cut(s)	86, 855
Eco91I	GGTNACC	1 cut(s)	1093
EcoO65I	GGTNACC	1 cut(s)	1093
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	48, 360
ErhI	CCWWGG	2 cut(s)	48, 360
FaeI	CATG	7 cut(s)	25, 223, 635, 694, 793, 998, 1045
FaqI	GGGAC	3 cut(s)	25, 872, 1194
FatI	CATG	7 cut(s)	21, 219, 631, 690, 789, 994, 1041
FauI	CCCGC	1 cut(s)	1256
Fnu4HI	GCNGC	5 cut(s)	243, 297, 650, 921, 1153
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	5 cut(s)	243, 297, 650, 921, 1153
FspBI	CTAG	3 cut(s)	720, 887, 1188
GluI	GCNGC	5 cut(s)	243, 297, 650, 921, 1153
GsuI	CTGGAG	2 cut(s)	459, 962
HaeIII	GGCC	3 cut(s)	285, 622, 1027
HgaI	GACGC	1 cut(s)	869
Hin1II	CATG	7 cut(s)	25, 223, 635, 694, 793, 998, 1045
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HindIII	AAGCTT	2 cut(s)	446, 1157
HinfI	GANTC	5 cut(s)	64, 128, 199, 455, 1219
HphI	GGTGA	2 cut(s)	767, 1106
Hpy166II	GTNNAC	1 cut(s)	1039
Hpy188I	TCNGA	4 cut(s)	63, 69, 1056, 1276
Hpy8I	GTNNAC	1 cut(s)	1039
HpyAV	CCTTC	9 cut(s)	296, 337, 383, 518, 548, 668, 809, 1082, 1113
HpyCH4III	ACNGT	5 cut(s)	117, 304, 464, 618, 1148
HpyCH4IV	ACGT	3 cut(s)	14, 586, 676
HpyCH4V	TGCA	6 cut(s)	111, 242, 322, 904, 923, 1163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 364, 860, 929
HpyF3I	CTNAG	3 cut(s)	864, 1259, 1286
HpySE526I	ACGT	3 cut(s)	14, 586, 676
Hsp92II	CATG	7 cut(s)	25, 223, 635, 694, 793, 998, 1045
Kzo9I	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
LmnI	GCTCC	4 cut(s)	364, 440, 778, 943
Lsp1109I	GCAGC	4 cut(s)	254, 308, 636, 907
LweI	GCATC	5 cut(s)	304, 331, 477, 955, 1172
MaeI	CTAG	3 cut(s)	720, 887, 1188
MaeII	ACGT	3 cut(s)	14, 586, 676
MaeIII	GTNAC	4 cut(s)	117, 867, 1093, 1112
MalI	GATC	8 cut(s)	60, 71, 567, 808, 825, 1019, 1058, 1278
MbiI	CCGCTC	2 cut(s)	340, 1263
MboI	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
MboII	GAAGA	6 cut(s)	383, 391, 464, 506, 922, 1219
MfeI	CAATTG	2 cut(s)	143, 924
MflI	RGATCY	5 cut(s)	565, 806, 823, 1017, 1276
MlsI	TGGCCA	1 cut(s)	622
MluNI	TGGCCA	1 cut(s)	622
MlyI	GAGTC	3 cut(s)	122, 208, 1213
MmeI	TCCRAC	1 cut(s)	957
Mox20I	TGGCCA	1 cut(s)	622
MscI	TGGCCA	1 cut(s)	622
MseI	TTAA	8 cut(s)	18, 135, 353, 612, 645, 666, 819, 1128
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	622
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	2 cut(s)	143, 924
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	108, 364, 860, 929
NdeII	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
NlaIII	CATG	7 cut(s)	25, 223, 635, 694, 793, 998, 1045
NlaIV	GGNNCC	3 cut(s)	442, 487, 808
NmuCI	GTSAC	2 cut(s)	117, 1112
NspI	RCATGY	1 cut(s)	1045
PaeR7I	CTCGAG	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	64, 455
PflFI	GACNNNGTC	1 cut(s)	675
PkrI	GCNGC	5 cut(s)	244, 298, 651, 922, 1154
PleI	GAGTC	3 cut(s)	122, 207, 1213
PpsI	GAGTC	3 cut(s)	122, 207, 1213
Psp6I	CCWGG	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	1093
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	3 cut(s)	442, 487, 808
PspXI	VCTCGAGB	1 cut(s)	86
PstNI	CAGNNNCTG	2 cut(s)	248, 1034
PsuI	RGATCY	5 cut(s)	565, 806, 823, 1017, 1276
PsyI	GACNNNGTC	1 cut(s)	675
RsaI	GTAC	6 cut(s)	177, 397, 421, 529, 604, 1078
RsaNI	GTAC	6 cut(s)	176, 396, 420, 528, 603, 1077
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	8 cut(s)	18, 135, 353, 612, 645, 666, 819, 1128
SatI	GCNGC	5 cut(s)	243, 297, 650, 921, 1153
Sau3AI	GATC	8 cut(s)	58, 69, 565, 806, 823, 1017, 1056, 1276
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	3 cut(s)	122, 208, 1213
ScrFI	CCNGG	1 cut(s)	249
SfaNI	GCATC	5 cut(s)	304, 331, 477, 955, 1172
SfcI	CTRYAG	1 cut(s)	1021
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	3 cut(s)	86, 572, 827
SmoI	CTYRAG	3 cut(s)	86, 572, 827
SpeI	ACTAGT	1 cut(s)	719
SsiI	CCGC	3 cut(s)	340, 1152, 1263
SspMI	CTAG	3 cut(s)	720, 887, 1188
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	48, 360
TaaI	ACNGT	5 cut(s)	117, 304, 464, 618, 1148
TaiI	ACGT	3 cut(s)	17, 589, 679
TaqI	TCGA	8 cut(s)	87, 126, 415, 492, 519, 774, 1059, 1197
TatI	WGTACW	3 cut(s)	395, 527, 602
TauI	GCSGC	1 cut(s)	1155
TfiI	GAWTC	2 cut(s)	64, 455
Tru1I	TTAA	8 cut(s)	18, 135, 353, 612, 645, 666, 819, 1128
Tru9I	TTAA	8 cut(s)	18, 135, 353, 612, 645, 666, 819, 1128
TscAI	CASTG	6 cut(s)	120, 309, 469, 623, 1179, 1263
TseFI	GTSAC	2 cut(s)	117, 1112
TseI	GCWGC	4 cut(s)	242, 296, 649, 920
Tsp45I	GTSAC	2 cut(s)	117, 1112
TspDTI	ATGAA	5 cut(s)	236, 339, 650, 783, 806
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	6 cut(s)	120, 309, 469, 623, 1179, 1263
Tth111I	GACNNNGTC	1 cut(s)	675
XapI	RAATTY	3 cut(s)	637, 841, 881
XceI	RCATGY	1 cut(s)	1045
XhoI	CTCGAG	1 cut(s)	86
XspI	CTAG	3 cut(s)	720, 887, 1188
ZrmI	AGTACT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.