Rh6CG156400

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008180
Physical Location & Seq
Forward (+)
20227095 .. 20227718
624 bp
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UTR
Exon/CDS
Intron
Rh6CG156400.1

Sequence Viewer

Length: 624 bp
ATGAATTGCCTCTGCGGATCTATTCTTATCAGAGGTCTTGAGAATGTGAAAGATTTTCATAAGGCTAAGGCTGCCTTGTTGGAAAATAAGAAATTTCTTGACAAATTAGAGTTGCAGTGGGCTCAACAAAGAGAGCCAACAGATGAGACAATGAATGTTGATAAAGAAGTACTTCGAGGCCTTAAACCTCATAATAGGTTGACTGAGTTGGAAATAAAAGCCTATCATGGTGCTAGTTTGCCGGATTTGTTGGGCAATGCCTCTTGCAAGCTTGAGAAGCTTGTCATTGATTCGTGTGTAGAATTGGTCGGTCTACCTTCACTTCACTTAACTTCACTGAAGAAGTTAGAGATTCAGAGCTGCCCTAAGCTTGTATCATTGCCCCTGAGCGGACTACCTATTTCGCTTGAAAATCTGAATATTTTAGGAAGTGGCATAATAAAGCAGCAGTGTGAGCAAGGGGGTAGTGAGTGGGAAAAAATAAGATATATCTTCATCAACTGTGGGAATAAGATATCTTCATCAGCAAGGGAAAAAGCAGCAGTGTCAGCGTATACCAACCCTGCCTTCTCCAATGCCATGAACAACTTTGTATCTTCATCAACTGTGGTACCAACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

207

Amino Acids

22.73

Weight (kDa)

8.13

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_R13L1-DRL21 PF25019 1 - 121 8.2e-27 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 610
AccBSI CCGCTC 1 cut(s) 390
AccI GTMKAC 2 cut(s) 313, 554
AciI CCGC 2 cut(s) 15, 390
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 2 cut(s) 171, 612
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 4 cut(s) 271, 280, 360, 370
AluI AGCT 4 cut(s) 271, 280, 360, 370
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 4 cut(s) 71, 360, 445, 539
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 171
Asp718I GGTACC 1 cut(s) 610
BaeI ACNNNNGTAYC 1 cut(s) 594
BanI GGYRCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 124
BbvI GCAGC 4 cut(s) 58, 347, 457, 551
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 234
BisI GCNGC 4 cut(s) 72, 361, 446, 540
BlsI GCNGC 4 cut(s) 73, 362, 447, 541
BmcAI AGTACT 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 612
Bpu10I CCTNAGC 3 cut(s) 66, 366, 386
BpuEI CTTGAG 2 cut(s) 59, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse3DI GCAATG 2 cut(s) 262, 377
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 2 cut(s) 262, 377
BseMII CTCAG 2 cut(s) 195, 377
BseXI GCAGC 4 cut(s) 58, 347, 457, 551
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 610
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 2 cut(s) 15, 390
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 196, 378
BspLI GGNNCC 1 cut(s) 612
BspPI GGATC 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 390
BsrDI GCAATG 2 cut(s) 262, 377
BssMI GATC 1 cut(s) 17
BssNAI GTATAC 1 cut(s) 555
Bst1107I GTATAC 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 503, 607
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 4 cut(s) 66, 204, 366, 386
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 4 cut(s) 71, 277, 454, 548
BstV1I GCAGC 4 cut(s) 58, 347, 457, 551
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BstZ17I GTATAC 1 cut(s) 555
BsuRI GGCC 1 cut(s) 180
BtsI GCAGTG 3 cut(s) 122, 455, 549
BtsIMutI CAGTG 4 cut(s) 122, 335, 455, 549
Cac8I GCNNGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 170, 611
CviAII CATG 3 cut(s) 227, 580, 621
CviQI GTAC 2 cut(s) 170, 611
DdeI CTNAG 4 cut(s) 66, 204, 366, 386
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eco147I AGGCCT 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 124
Eco32I GATATC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 3 cut(s) 230, 583, 624
FaiI YATR 8 cut(s) 60, 192, 228, 437, 489, 555, 581, 622
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 156, 188
FatI CATG 3 cut(s) 226, 579, 620
FblI GTMKAC 2 cut(s) 313, 554
Fnu4HI GCNGC 4 cut(s) 72, 361, 446, 540
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 4 cut(s) 72, 361, 446, 540
FspBI CTAG 1 cut(s) 234
GluI GCNGC 4 cut(s) 72, 361, 446, 540
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 242
Hin1II CATG 3 cut(s) 230, 583, 624
HincII GTYRAC 1 cut(s) 201
HindII GTYRAC 1 cut(s) 201
HindIII AAGCTT 3 cut(s) 269, 278, 368
HinfI GANTC 2 cut(s) 290, 352
HpaII CCGG 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 201, 314, 555
Hpy188I TCNGA 3 cut(s) 32, 357, 417
Hpy188III TCNNGA 2 cut(s) 38, 98
Hpy8I GTNNAC 3 cut(s) 201, 314, 555
HpyAV CCTTC 2 cut(s) 327, 577
HpyCH4III ACNGT 2 cut(s) 503, 607
HpyCH4V TGCA 3 cut(s) 115, 267, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 277, 454, 548
HpyF3I CTNAG 4 cut(s) 66, 204, 366, 386
Hsp92II CATG 3 cut(s) 230, 583, 624
KpnI GGTACC 1 cut(s) 614
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 255, 398, 576
Lsp1109I GCAGC 4 cut(s) 58, 347, 457, 551
MaeI CTAG 1 cut(s) 234
MalI GATC 1 cut(s) 19
MbiI CCGCTC 1 cut(s) 390
MboI GATC 1 cut(s) 17
MboII GAAGA 4 cut(s) 352, 484, 510, 588
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 4 cut(s) 4, 92, 104, 302
MmeI TCCRAC 2 cut(s) 60, 189
MnlI CCTC 5 cut(s) 20, 26, 170, 198, 271
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 2 cut(s) 183, 329
MspI CCGG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 71, 277, 454, 548
NdeII GATC 1 cut(s) 17
NlaIII CATG 3 cut(s) 230, 583, 624
NlaIV GGNNCC 1 cut(s) 612
PceI AGGCCT 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 290, 352
PkrI GCNGC 4 cut(s) 73, 362, 447, 541
PspN4I GGNNCC 1 cut(s) 612
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 171, 612
RsaNI GTAC 2 cut(s) 170, 611
SaqAI TTAA 2 cut(s) 183, 329
SatI GCNGC 4 cut(s) 72, 361, 446, 540
Sau3AI GATC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 171
SduI GDGCHC 1 cut(s) 124
SetI ASST 9 cut(s) 37, 190, 200, 273, 282, 319, 362, 372, 400
SmlI CTYRAG 2 cut(s) 38, 272
SmoI CTYRAG 2 cut(s) 38, 272
Sse9I AATT 4 cut(s) 4, 92, 104, 302
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 2 cut(s) 15, 390
SspI AATATT 1 cut(s) 421
SspMI CTAG 1 cut(s) 234
StuI AGGCCT 1 cut(s) 180
TaaI ACNGT 2 cut(s) 503, 607
TaqI TCGA 1 cut(s) 175
TaqII GACCGA 1 cut(s) 299
TasI AATT 4 cut(s) 4, 92, 104, 302
TatI WGTACW 1 cut(s) 169
TfiI GAWTC 2 cut(s) 290, 352
Tru1I TTAA 2 cut(s) 183, 329
Tru9I TTAA 2 cut(s) 183, 329
TscAI CASTG 4 cut(s) 122, 342, 455, 549
TseI GCWGC 4 cut(s) 71, 360, 445, 539
TspDTI ATGAA 7 cut(s) 17, 47, 167, 484, 510, 588, 596
TspRI CASTG 4 cut(s) 122, 342, 455, 549
XapI RAATTY 1 cut(s) 92
XmiI GTMKAC 2 cut(s) 313, 554
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.