Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012430.1

Orthogroup ID

OG0008180

Physical Location & Seq

Genomic Coordinates Reverse (-)

28886 .. 29803

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012430.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgtcacgcttcttgaatgtgtcttcaactgttcgtcatgtgtgcttactatatcaagttgatgattcagaagtgttagcagatttgttcaaaaagtgttgcacatataagaaattgaggacatttatgttggtttccgacttagttcaaccccctcggggtcttcttgagtctgaactctttgaaaagttttttcaatcatttcatctattaagggttttagatttaagtggcagtggtatccgtcgtttgtcgaactcggttggaaacaatacatgtcttcattatctcaacctttgcggtactcggatcaaagttttaccagaaggtgtaggtaatctgattggattagaaacatttaacctcctagatgttccatctattgtagaatggccctcaaactttgagaagttgactaagcttcgacacctttactataataagcagggtaatggtaatatgccaagagcattgggaaaactaacgaggttggaaactttgcatacatttgttgtgaaaagcgaagaaggatatgaaattgaggagctgaaagacatgaattgcctctgcggatctattcttatcagaggtcttgagaatgtgaaagattttcataaggctaaggctgccttgttggaaaataagaaatttcttgacaaattagagttgcagtgggctcaacaaagagagccaacagatgagacaatgaatgttgataaagaagtacttcgaggccttaaacctcataataggttgactgagttggaaataaaagcctatcattgtgctagtttgccggatttgttgggcaatgcctcttgcaagcttgagaagcttgtcattgattcgtgtgtagaattggtcggtctaccttcacttaacttcactgaagaagttagagattcagagctgccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

305

Amino Acids

34.76

Weight (kDa)

6.47

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0255171 RchiOBHm_Chr6g0268001
rosa_multiflora	Rmu_sc0001839.1_g000033 Rmu_sc0003304.1_g000007 Rmu_sc0004590.1_g000004 Rmu_sc0011027.1_g000014 Rmu_sc0012430.1_g000009 Rmu_sc0018524.1_g000001 Rmu_sc0039783.1_g000001
rosa_roxburghii	Rroxscaffold_7G00200180
rosa_rugosa	Rorug06G0036900 Rorug06G0038600
rosa_samantha	Rh5BG508000 Rh5BG508300 Rh5CG531800 Rh5CG532000 Rh6AG074300 Rh6BG067600 Rh6BG161900 Rh6BG162000 Rh6CG066800 Rh6CG156400 Rh6DG063800 Rh6DG147400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	868
AciI	CCGC	2 cut(s)	300, 570
AclWI	GGATC	2 cut(s)	317, 580
AcsI	RAATTY	1 cut(s)	647
AcuI	CTGAAG	1 cut(s)	909
AfaI	GTAC	2 cut(s)	304, 726
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	6 cut(s)	16, 27, 91, 149, 185, 197
AluBI	AGCT	5 cut(s)	421, 547, 826, 835, 910
AluI	AGCT	5 cut(s)	421, 547, 826, 835, 910
Alw26I	GTCTC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	317, 580
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	2 cut(s)	392, 733
ApeKI	GCWGC	2 cut(s)	626, 910
ApoI	RAATTY	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	393
AvaI	CYCGRG	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	679
BbsI	GAAGAC	3 cut(s)	15, 155, 272
BbvI	GCAGC	2 cut(s)	613, 897
BccI	CCATC	1 cut(s)	385
BciVI	GTATCC	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	695
BfaI	CTAG	2 cut(s)	368, 789
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	627, 911
BlsI	GCNGC	2 cut(s)	628, 912
BmcAI	AGTACT	1 cut(s)	726
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	393
BpiI	GAAGAC	3 cut(s)	15, 155, 272
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	3 cut(s)	188, 614, 848
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	817
BseDI	CCNNGG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	817
BseMII	CTCAG	1 cut(s)	750
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	613, 897
BshFI	GGCC	2 cut(s)	394, 735
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	797
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	695
BsnI	GGCC	2 cut(s)	394, 735
BsoBI	CYCGRG	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	2 cut(s)	309, 572
BspACI	CCGC	2 cut(s)	300, 570
BspANI	GGCC	2 cut(s)	394, 735
BspCNI	CTCAG	1 cut(s)	751
BspPI	GGATC	2 cut(s)	317, 580
BsrDI	GCAATG	1 cut(s)	817
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	309, 572
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	824
BstDEI	CTNAG	4 cut(s)	142, 417, 621, 759
BstKTI	GATC	2 cut(s)	312, 575
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	2 cut(s)	309, 572
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 832
BstNSI	RCATGY	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	613, 897
BstV2I	GAAGAC	3 cut(s)	15, 155, 272
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	394, 735
BtsI	GCAGTG	2 cut(s)	241, 677
BtsIMutI	CAGTG	3 cut(s)	241, 677, 885
Cac8I	GCNNGC	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	303, 725
CviAII	CATG	3 cut(s)	38, 276, 556
CviQI	GTAC	2 cut(s)	303, 725
DdeI	CTNAG	4 cut(s)	142, 417, 621, 759
DpnI	GATC	2 cut(s)	311, 574
DpnII	GATC	2 cut(s)	309, 572
Eco147I	AGGCCT	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	909
Eco88I	CYCGRG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	679
FaeI	CATG	3 cut(s)	41, 279, 559
FalI	AAGNNNNNCTT	4 cut(s)	614, 646, 711, 743
FatI	CATG	3 cut(s)	37, 275, 555
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	2 cut(s)	627, 911
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	2 cut(s)	627, 911
FspBI	CTAG	2 cut(s)	368, 789
GluI	GCNGC	2 cut(s)	627, 911
HaeIII	GGCC	2 cut(s)	394, 735
HapII	CCGG	1 cut(s)	797
Hin1II	CATG	3 cut(s)	41, 279, 559
HincII	GTYRAC	2 cut(s)	414, 756
HindII	GTYRAC	2 cut(s)	414, 756
HindIII	AAGCTT	3 cut(s)	419, 824, 833
HinfI	GANTC	4 cut(s)	65, 170, 845, 902
HpaII	CCGG	1 cut(s)	797
Hpy166II	GTNNAC	3 cut(s)	414, 756, 869
Hpy188I	TCNGA	7 cut(s)	70, 139, 175, 309, 342, 587, 907
Hpy188III	TCNNGA	4 cut(s)	13, 167, 593, 653
Hpy8I	GTNNAC	3 cut(s)	414, 756, 869
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	3 cut(s)	320, 521, 882
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	102, 502, 670, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 832
HpyF3I	CTNAG	4 cut(s)	142, 417, 621, 759
Hsp92II	CATG	3 cut(s)	41, 279, 559
Kzo9I	GATC	2 cut(s)	309, 572
LmnI	GCTCC	1 cut(s)	544
LpnPI	CCDG	3 cut(s)	336, 431, 810
Lsp1109I	GCAGC	2 cut(s)	613, 897
MaeI	CTAG	2 cut(s)	368, 789
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	2 cut(s)	311, 574
MboI	GATC	2 cut(s)	309, 572
MboII	GAAGA	5 cut(s)	15, 155, 272, 536, 902
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	6 cut(s)	113, 537, 559, 647, 659, 857
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	5 cut(s)	162, 244, 471, 615, 744
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	5 cut(s)	212, 227, 360, 738, 879
MspI	CCGG	1 cut(s)	797
MwoI	GCNNNNNNNGC	2 cut(s)	626, 832
NdeII	GATC	2 cut(s)	309, 572
NlaIII	CATG	3 cut(s)	41, 279, 559
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	279
PceI	AGGCCT	1 cut(s)	735
PciI	ACATGT	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	65, 845, 902
PkrI	GCNGC	2 cut(s)	628, 912
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PscI	ACATGT	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	2 cut(s)	304, 726
RsaNI	GTAC	2 cut(s)	303, 725
SaqAI	TTAA	5 cut(s)	212, 227, 360, 738, 879
SatI	GCNGC	2 cut(s)	627, 911
Sau3AI	GATC	2 cut(s)	309, 572
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	726
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	679
SmlI	CTYRAG	3 cut(s)	167, 593, 827
SmoI	CTYRAG	3 cut(s)	167, 593, 827
Sse9I	AATT	6 cut(s)	113, 537, 559, 647, 659, 857
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	2 cut(s)	300, 570
SspMI	CTAG	2 cut(s)	368, 789
StuI	AGGCCT	1 cut(s)	735
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	3 cut(s)	254, 424, 730
TaqII	GACCGA	1 cut(s)	854
TasI	AATT	6 cut(s)	113, 537, 559, 647, 659, 857
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	3 cut(s)	65, 845, 902
Tru1I	TTAA	5 cut(s)	212, 227, 360, 738, 879
Tru9I	TTAA	5 cut(s)	212, 227, 360, 738, 879
TscAI	CASTG	3 cut(s)	241, 677, 892
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	2 cut(s)	626, 910
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	6 cut(s)	194, 272, 549, 572, 602, 722
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	3 cut(s)	241, 677, 892
XapI	RAATTY	1 cut(s)	647
XceI	RCATGY	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	2 cut(s)	368, 789
ZrmI	AGTACT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.