Rh6AG074300

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008180
Physical Location & Seq
Forward (+)
10553225 .. 10558285
5061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG074300.1

Sequence Viewer

Length: 261 bp
ATGATTGGCATCCGTAAGTTGTCTGGTGCCATCGAAGAATTGAAACACCTTCGCTACCTCGATTTGAGTGCAACTGCTATTGTATATTTGCCAGAAGGCATAGTAGATCTACTTGAGTTAGAAACACTTCAGCTTGGGAATTGTACTGGACTTAAACAGTGGCCAGAGAACCTTGAGAAGTTGGTTAAGCTGCGACACCTTCATTTTAATAGACCACGTCAAATGAGTTCCATGCCAAAAAAACTTGGGGAAATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04014 map03460 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

86

Amino Acids

9.86

Weight (kDa)

7.91

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 10 - 84 2.9e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 145
AgsI TTSAA 1 cut(s) 43
AjiI CACGTC 1 cut(s) 218
AluBI AGCT 2 cut(s) 133, 190
AluI AGCT 2 cut(s) 133, 190
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 126
BalI TGGCCA 1 cut(s) 163
BanI GGYRCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 177
BccI CCATC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BfaI CTAG 1 cut(s) 259
BglII AGATCT 1 cut(s) 106
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmgBI CACGTC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 28
BmsI GCATC 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 134, 194
BsaBI GATNNNNATC 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 8
BseGI GGATG 1 cut(s) 9
BseJI GATNNNNATC 1 cut(s) 8
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 177
BshFI GGCC 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 26
BsnI GGCC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 151
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 159
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 163
BtrI CACGTC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 164
Csp6I GTAC 1 cut(s) 144
CviAII CATG 1 cut(s) 232
CviJI RGCY 3 cut(s) 133, 163, 190
CviKI_1 RGCY 3 cut(s) 133, 163, 190
CviQI GTAC 1 cut(s) 144
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 113
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 85, 101, 233
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 1 cut(s) 259
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 163
Hin1II CATG 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 59, 89, 209
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 1 cut(s) 71
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 9, 105, 132, 177
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 259
MaeII ACGT 1 cut(s) 217
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 163
MluCI AATT 3 cut(s) 38, 139, 252
MluNI TGGCCA 1 cut(s) 163
MnlI CCTC 1 cut(s) 68
Mox20I TGGCCA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 126
MscI TGGCCA 1 cut(s) 163
MseI TTAA 3 cut(s) 153, 186, 207
Msp20I TGGCCA 1 cut(s) 163
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 216
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 153, 186, 207
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 1 cut(s) 106
SetI ASST 7 cut(s) 51, 60, 135, 174, 192, 201, 220
SfaNI GCATC 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 113, 173
SmoI CTYRAG 2 cut(s) 113, 173
Sse9I AATT 3 cut(s) 38, 139, 252
SspMI CTAG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 33, 60
TasI AATT 3 cut(s) 38, 139, 252
TatI WGTACW 1 cut(s) 143
Tru1I TTAA 3 cut(s) 153, 186, 207
Tru9I TTAA 3 cut(s) 153, 186, 207
TscAI CASTG 1 cut(s) 164
TseI GCWGC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 191
TspRI CASTG 1 cut(s) 164
Tth111I GACNNNGTC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.