Rmu_sc0018524.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018524.1
OG0008180
Physical Location & Seq
Reverse (-)
576 .. 1701
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018524.1_g000001.1.cds

Sequence Viewer

Length: 807 bp
atggtcaagcatgctgagatgaacaactttgatgttgggagttttgtgaaatattgggttttggccggcggtgttccggccattttcataccggttgattattcgatccgtgaggattcgagcgtccgatccacttgtgatttggacatatcaatcgtggaagtattccgaagactttgggaggtctcggatgtggtacttgacgaagtatttttggatggttattttgtggattggctgctttgttctatattgaacaagcagcgggagtttcgagttgtttctaaatttgaattaaggatgtgggtgcatgtgtctaaagattatgatgttgtgaagataatgaaatcgatgctggagtgtgcaacaagaaaggtgtgcaagttatcacacgaggatgttattaggaatcaattcgaagtggtgctgaacaagaagtttttacttgtattagatgacgtgtggaacgaggctccccatgattgggatgacttcaagttacttttcagacttgcgcatcccgggagcagggttatcgtaaccactaggagtacaactgtttcttccattgttacgtcgaatggtgacattttgtgtttggatatcttgtctcatgatcactgttggggcatcatcaagcatggtttaagaacaaacgttgaacagcgtccagatttgaaggagattggggtgaaattggcagaaaaatgtaaaggtgttcccttggtagctaaggtgattggggattacttgcgtatcaaatcagatcagagagaatggggtagcctgctgaactgtgacctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

268

Amino Acids

30.9

Weight (kDa)

6.08

Isoelectric Point (pI)

27.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 516
AciI CCGC 2 cut(s) 69, 265
AclI AACGTT 1 cut(s) 657
AclWI GGATC 2 cut(s) 100, 123
AcoI YGGCCR 2 cut(s) 63, 78
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 2 cut(s) 198, 553
AfiI CCNNNNNNNGG 3 cut(s) 483, 484, 528
AflIII ACRYGT 1 cut(s) 459
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 5 cut(s) 256, 293, 496, 662, 679
AjiI CACGTC 1 cut(s) 460
AluBI AGCT 1 cut(s) 731
AluI AGCT 1 cut(s) 731
Alw26I GTCTC 2 cut(s) 190, 615
AlwI GGATC 2 cut(s) 100, 123
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 2 cut(s) 63, 78
ApeKI GCWGC 2 cut(s) 238, 262
ApoI RAATTY 1 cut(s) 287
AsiGI ACCGGT 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 517
AsuC2I CCSGG 2 cut(s) 522, 523
AsuHPI GGTGA 3 cut(s) 596, 703, 748
AsuII TTCGAA 1 cut(s) 417
AvaI CYCGRG 1 cut(s) 521
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BauI CACGAG 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 225, 274
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 517, 551
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 2 cut(s) 522, 523
BcoDI GTCTC 2 cut(s) 190, 615
BfaI CTAG 1 cut(s) 546
BisI GCNGC 2 cut(s) 239, 263
BlsI GCNGC 2 cut(s) 240, 264
Bme1390I CCNGG 2 cut(s) 522, 523
BmeT110I CYCGRG 1 cut(s) 521
BmgBI CACGTC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 2 cut(s) 522, 523
BmsI GCATC 3 cut(s) 342, 526, 639
BpiI GAAGAC 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 732
Bpu14I TTCGAA 1 cut(s) 417
BpuMI CCSGG 2 cut(s) 522, 523
Bsa29I ATCGAT 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 521, 723
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 483, 484, 528
Bse118I RCCGGY 2 cut(s) 65, 91
BseCI ATCGAT 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 521, 723
BseGI GGATG 6 cut(s) 196, 223, 306, 403, 493, 517
BseLI CCNNNNNNNGG 3 cut(s) 483, 484, 528
BseMII CTCAG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 225, 274
BshFI GGCC 2 cut(s) 65, 80
BshTI ACCGGT 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 4 cut(s) 66, 77, 92, 522
BslI CCNNNNNNNGG 3 cut(s) 483, 484, 528
BsmAI GTCTC 2 cut(s) 190, 615
BsnI GGCC 2 cut(s) 65, 80
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 4 cut(s) 105, 128, 616, 766
BspACI CCGC 2 cut(s) 69, 265
BspANI GGCC 2 cut(s) 65, 80
BspCNI CTCAG 1 cut(s) 7
BspDI ATCGAT 1 cut(s) 350
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 1 cut(s) 474
BspPI GGATC 2 cut(s) 100, 123
BspT104I TTCGAA 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 190
BsrFI RCCGGY 2 cut(s) 65, 91
BssAI RCCGGY 2 cut(s) 65, 91
BssECI CCNNGG 2 cut(s) 521, 723
BssMI GATC 4 cut(s) 105, 128, 616, 766
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 723
Bst2BI CACGAG 1 cut(s) 392
Bst4CI ACNGT 3 cut(s) 559, 623, 797
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 12, 67, 788
BstDEI CTNAG 2 cut(s) 15, 732
BstF5I GGATG 6 cut(s) 196, 223, 306, 403, 493, 517
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 4 cut(s) 108, 131, 619, 769
BstMAI GTCTC 2 cut(s) 190, 615
BstMBI GATC 4 cut(s) 105, 128, 616, 766
BstNSI RCATGY 2 cut(s) 14, 314
BstSCI CCNGG 2 cut(s) 520, 521
BstV1I GCAGC 2 cut(s) 225, 274
BstV2I GAAGAC 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 350
BsuRI GGCC 2 cut(s) 65, 80
BsuTUI ATCGAT 1 cut(s) 350
BtrI CACGTC 1 cut(s) 460
BtsCI GGATG 6 cut(s) 196, 223, 306, 403, 493, 517
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 3 cut(s) 12, 67, 788
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 517
Cfr10I RCCGGY 2 cut(s) 65, 91
Cfr9I CCCGGG 1 cut(s) 521
ClaI ATCGAT 1 cut(s) 350
CseI GACGC 2 cut(s) 112, 656
Csp6I GTAC 2 cut(s) 197, 552
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 5 cut(s) 11, 311, 479, 614, 641
CviJI RGCY 6 cut(s) 65, 80, 238, 473, 731, 786
CviKI_1 RGCY 6 cut(s) 65, 80, 238, 473, 731, 786
CviQI GTAC 2 cut(s) 197, 552
DdeI CTNAG 2 cut(s) 15, 732
DpnI GATC 4 cut(s) 107, 130, 618, 768
DpnII GATC 4 cut(s) 105, 128, 616, 766
EaeI YGGCCR 2 cut(s) 63, 78
Eco130I CCWWGG 1 cut(s) 723
Eco31I GGTCTC 1 cut(s) 190
Eco32I GATATC 1 cut(s) 604
Eco88I CYCGRG 1 cut(s) 521
EcoRV GATATC 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 723
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 5 cut(s) 14, 314, 482, 617, 644
FaiI YATR 9 cut(s) 12, 89, 149, 251, 312, 327, 480, 615, 642
FatI CATG 5 cut(s) 10, 310, 478, 613, 640
FauI CCCGC 1 cut(s) 258
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 2 cut(s) 239, 263
FokI GGATG 6 cut(s) 203, 230, 313, 410, 500, 504
Fsp4HI GCNGC 2 cut(s) 239, 263
FspBI CTAG 1 cut(s) 546
FspI TGCGCA 1 cut(s) 516
GlaI GCGC 1 cut(s) 516
GluI GCNGC 2 cut(s) 239, 263
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 65, 80
HapII CCGG 4 cut(s) 66, 77, 92, 522
HgaI GACGC 2 cut(s) 112, 656
HhaI GCGC 1 cut(s) 517
Hin1II CATG 5 cut(s) 14, 314, 482, 617, 644
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HinfI GANTC 2 cut(s) 116, 409
HpaII CCGG 4 cut(s) 66, 77, 92, 522
HphI GGTGA 3 cut(s) 596, 703, 748
Hpy188I TCNGA 6 cut(s) 128, 170, 190, 509, 766, 771
Hpy188III TCNNGA 2 cut(s) 614, 671
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 3 cut(s) 559, 623, 797
HpyCH4IV ACGT 3 cut(s) 459, 575, 657
HpyCH4V TGCA 3 cut(s) 310, 365, 381
HpyF3I CTNAG 2 cut(s) 15, 732
HpySE526I ACGT 3 cut(s) 459, 575, 657
Hsp92II CATG 5 cut(s) 14, 314, 482, 617, 644
HspAI GCGC 1 cut(s) 515
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 4 cut(s) 105, 128, 616, 766
LmnI GCTCC 2 cut(s) 478, 525
LpnPI CCDG 8 cut(s) 79, 90, 105, 341, 514, 535, 684, 800
Lsp1109I GCAGC 2 cut(s) 225, 274
LweI GCATC 3 cut(s) 342, 526, 639
MaeI CTAG 1 cut(s) 546
MaeII ACGT 3 cut(s) 459, 575, 657
MaeIII GTNAC 5 cut(s) 498, 538, 571, 584, 797
MalI GATC 4 cut(s) 107, 130, 618, 768
MboI GATC 4 cut(s) 105, 128, 616, 766
MboII GAAGA 3 cut(s) 183, 349, 555
MluCI AATT 4 cut(s) 287, 293, 413, 695
MnlI CCTC 4 cut(s) 106, 175, 388, 463
MroNI GCCGGC 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 413
MseI TTAA 2 cut(s) 296, 647
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 4 cut(s) 66, 77, 92, 522
MspR9I CCNGG 2 cut(s) 522, 523
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 2 cut(s) 522, 523
NdeII GATC 4 cut(s) 105, 128, 616, 766
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 5 cut(s) 14, 314, 482, 617, 644
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 2 cut(s) 584, 797
NsbI TGCGCA 1 cut(s) 516
NspI RCATGY 2 cut(s) 14, 314
NspV TTCGAA 1 cut(s) 417
PaeI GCATGC 1 cut(s) 14
PagI TCATGA 1 cut(s) 613
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PdiI GCCGGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 2 cut(s) 116, 409
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 2 cut(s) 240, 264
Psp1406I AACGTT 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 474
RsaI GTAC 2 cut(s) 198, 553
RsaNI GTAC 2 cut(s) 197, 552
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 2 cut(s) 296, 647
SatI GCNGC 2 cut(s) 239, 263
Sau3AI GATC 4 cut(s) 105, 128, 616, 766
ScrFI CCNGG 2 cut(s) 522, 523
SetI ASST 9 cut(s) 186, 378, 462, 578, 660, 718, 733, 738, 804
SfaNI GCATC 3 cut(s) 342, 526, 639
SfuI TTCGAA 1 cut(s) 417
SmaI CCCGGG 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 396
SphI GCATGC 1 cut(s) 14
Sse9I AATT 4 cut(s) 287, 293, 413, 695
SsiI CCGC 2 cut(s) 69, 265
SspI AATATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 546
StyD4I CCNGG 2 cut(s) 520, 521
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 3 cut(s) 559, 623, 797
TaiI ACGT 3 cut(s) 462, 578, 660
TaqI TCGA 6 cut(s) 104, 119, 274, 350, 417, 578
TasI AATT 4 cut(s) 287, 293, 413, 695
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 2 cut(s) 116, 409
Tru1I TTAA 2 cut(s) 296, 647
Tru9I TTAA 2 cut(s) 296, 647
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 2 cut(s) 584, 797
TseI GCWGC 2 cut(s) 238, 262
Tsp45I GTSAC 2 cut(s) 584, 797
TspDTI ATGAA 3 cut(s) 35, 76, 359
TspGWI ACGGA 1 cut(s) 98
TspMI CCCGGG 1 cut(s) 521
TspRI CASTG 1 cut(s) 626
XapI RAATTY 1 cut(s) 287
XceI RCATGY 2 cut(s) 14, 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmaI CCCGGG 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.